Wall clock time and date at job start Tue Mar 31 2020 05:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38255 * 119.73488 * 2 1 4 4 C 1.37937 * 120.09900 * 180.02562 * 3 2 1 5 5 C 1.39496 * 119.76383 * 0.25408 * 4 3 2 6 6 C 1.47848 * 120.03782 * 179.72819 * 5 4 3 7 7 O 1.21551 * 119.99296 * 179.97438 * 6 5 4 8 8 N 1.34770 * 120.00042 * 359.97438 * 6 5 4 9 9 C 1.46499 * 119.99931 * 180.02562 * 8 6 5 10 10 H 1.08999 * 110.89066 * 31.11430 * 9 8 6 11 11 C 1.54917 * 111.00317 * 267.19399 * 9 8 6 12 12 N 1.47427 * 104.83288 * 204.91415 * 11 9 8 13 13 C 1.36932 * 125.64719 * 204.17474 * 12 11 9 14 14 H 1.08000 * 120.00380 * 359.96766 * 13 12 11 15 15 C 1.38816 * 119.99610 * 179.97438 * 13 12 11 16 16 N 1.31610 * 120.00165 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99603 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47293 * 89.99382 * 17 15 13 19 19 H 1.48497 * 109.47058 * 209.99437 * 17 15 13 20 20 H 1.48498 * 109.47271 * 329.99785 * 17 15 13 21 21 C 1.47023 * 108.70231 * 24.12746 * 12 11 9 22 22 C 1.54326 * 107.27211 * 358.94292 * 21 12 11 23 23 H 1.08992 * 110.72409 * 96.16855 * 22 21 12 24 24 O 1.42900 * 110.87090 * 219.37449 * 22 21 12 25 25 C 1.39773 * 119.91573 * 359.47397 * 5 4 3 26 26 C 1.37981 * 119.76210 * 0.52956 * 25 5 4 27 27 C 1.51398 * 109.75709 * 179.74506 * 26 25 5 28 28 C 1.54344 * 105.17425 * 17.17765 * 27 26 25 29 29 C 1.51344 * 130.40533 * 180.21908 * 25 5 4 30 30 H 1.08993 * 109.47733 * 90.00176 * 1 2 3 31 31 H 1.09005 * 109.46823 * 210.00023 * 1 2 3 32 32 H 1.08998 * 109.47117 * 329.99529 * 1 2 3 33 33 H 1.07997 * 119.95161 * 0.02562 * 3 2 1 34 34 H 1.08002 * 120.11462 * 179.97438 * 4 3 2 35 35 H 0.96999 * 120.00412 * 359.97438 * 8 6 5 36 36 H 1.08992 * 110.36361 * 323.75575 * 11 9 8 37 37 H 1.09002 * 110.36359 * 86.07633 * 11 9 8 38 38 H 0.97005 * 120.00109 * 180.02562 * 16 15 13 39 39 H 1.08991 * 109.88449 * 239.52075 * 21 12 11 40 40 H 1.09006 * 110.00925 * 118.42886 * 21 12 11 41 41 H 0.96708 * 113.99913 * 293.60504 * 24 22 21 42 42 H 1.08998 * 110.30104 * 136.10213 * 27 26 25 43 43 H 1.09003 * 110.29784 * 258.25283 * 27 26 25 44 44 H 1.08998 * 110.82926 * 91.89927 * 28 27 26 45 45 H 1.08994 * 110.83218 * 215.27245 * 28 27 26 46 46 H 1.08999 * 110.31090 * 44.19857 * 29 25 5 47 47 H 1.08997 * 110.39322 * 282.08139 * 29 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1927 1.2005 0.0000 4 6 3.5721 1.2093 -0.0005 5 6 4.2722 0.0028 -0.0064 6 6 5.7507 0.0051 -0.0131 7 8 6.3600 -1.0466 -0.0178 8 7 6.4227 1.1733 -0.0140 9 6 7.8877 1.1756 -0.0212 10 1 8.2751 0.3055 -0.5511 11 6 8.4499 1.2443 1.4207 12 7 9.7902 1.8409 1.2752 13 6 10.8320 1.6859 2.1501 14 1 10.7068 1.0835 3.0377 15 6 12.0492 2.3032 1.8963 16 7 12.2020 3.0370 0.8146 17 14 13.4702 2.0923 3.0903 18 1 14.2728 0.9054 2.6999 19 1 14.3289 3.3033 3.0567 20 1 12.9386 1.9002 4.4635 21 6 9.8232 2.6290 0.0344 22 6 8.4388 2.4905 -0.6334 23 1 7.7994 3.3342 -0.3741 24 8 8.5673 2.3728 -2.0517 25 6 3.5743 -1.2082 -0.0007 26 6 2.1945 -1.2036 -0.0002 27 6 1.6780 -2.6267 0.0001 28 6 2.8781 -3.4920 0.4398 29 6 4.0830 -2.6336 -0.0006 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8899 0.5139 33 1 1.6476 2.1328 0.0004 34 1 4.1080 2.1469 -0.0010 35 1 5.9365 2.0126 -0.0107 36 1 7.8185 1.8773 2.0442 37 1 8.5242 0.2439 1.8469 38 1 13.0527 3.4681 0.6370 39 1 10.5957 2.2421 -0.6300 40 1 10.0215 3.6762 0.2629 41 1 8.9081 3.1684 -2.4832 42 1 0.8568 -2.7308 0.7092 43 1 1.3530 -2.9113 -1.0007 44 1 2.8780 -3.6343 1.5204 45 1 2.8732 -4.4522 -0.0759 46 1 4.9040 -2.7423 0.7081 47 1 4.4070 -2.9213 -1.0007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078247409.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:14 Heat of formation + Delta-G solvation = -38.066688 kcal Electronic energy + Delta-G solvation = -28177.943978 eV Core-core repulsion = 24325.721511 eV Total energy + Delta-G solvation = -3852.222467 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.74774 -39.21572 -37.69520 -36.03890 -35.06107 -34.03020 -33.22096 -31.62645 -29.27041 -28.60151 -28.13906 -27.46123 -26.41505 -24.37717 -22.79421 -21.58562 -21.18208 -20.52305 -20.18135 -19.71940 -17.52647 -16.98725 -16.67802 -16.27005 -15.78155 -15.46029 -15.05267 -14.74633 -14.57849 -14.38830 -14.00639 -13.88697 -13.60123 -13.46033 -13.03416 -12.92063 -12.68046 -12.53900 -12.48749 -12.22234 -12.04082 -11.88514 -11.50152 -11.45188 -11.33878 -11.24959 -11.18650 -11.01047 -10.87806 -10.81294 -10.15784 -9.90301 -9.83565 -9.71092 -9.29882 -8.90106 -8.72708 -8.69750 -8.58135 -6.91030 -5.75876 -3.10338 0.75526 1.17564 2.90603 3.31324 3.40067 3.44983 3.46679 3.76041 4.19561 4.38171 4.44399 4.57016 4.64310 4.71067 4.84523 4.88950 4.92585 5.04157 5.17437 5.26253 5.29508 5.39418 5.44760 5.49569 5.54193 5.58790 5.64402 5.67403 5.70290 5.75831 5.82784 5.93176 6.02211 6.07936 6.09900 6.13182 6.14994 6.30047 6.41159 6.54238 6.63008 6.72605 6.91440 7.32915 7.47196 7.70343 7.75900 8.12430 8.17775 8.43498 9.15532 9.75590 10.38769 11.35940 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.020422 B = 0.002621 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.747758 B =10679.669523 C =11259.988138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.053 4.053 3 C -0.131 4.131 4 C -0.082 4.082 5 C -0.124 4.124 6 C 0.556 3.444 7 O -0.532 6.532 8 N -0.711 5.711 9 C 0.139 3.861 10 H 0.106 0.894 11 C 0.130 3.870 12 N -0.600 5.600 13 C -0.228 4.228 14 H 0.081 0.919 15 C -0.008 4.008 16 N -0.924 5.924 17 Si 0.915 3.085 18 H -0.288 1.288 19 H -0.290 1.290 20 H -0.281 1.281 21 C 0.154 3.846 22 C 0.068 3.932 23 H 0.056 0.944 24 O -0.563 6.563 25 C -0.028 4.028 26 C -0.111 4.111 27 C -0.078 4.078 28 C -0.124 4.124 29 C -0.082 4.082 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.395 0.605 36 H 0.024 0.976 37 H 0.050 0.950 38 H 0.253 0.747 39 H 0.061 0.939 40 H 0.049 0.951 41 H 0.376 0.624 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.091 0.909 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.648 -4.317 -3.891 25.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.053 4.053 3 C -0.149 4.149 4 C -0.101 4.101 5 C -0.127 4.127 6 C 0.343 3.657 7 O -0.410 6.410 8 N -0.362 5.362 9 C 0.033 3.967 10 H 0.124 0.876 11 C 0.003 3.997 12 N -0.328 5.328 13 C -0.356 4.356 14 H 0.099 0.901 15 C -0.204 4.204 16 N -0.572 5.572 17 Si 0.746 3.254 18 H -0.215 1.215 19 H -0.216 1.216 20 H -0.206 1.206 21 C 0.028 3.972 22 C 0.008 3.992 23 H 0.074 0.926 24 O -0.367 6.367 25 C -0.029 4.029 26 C -0.111 4.111 27 C -0.115 4.115 28 C -0.161 4.161 29 C -0.118 4.118 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.230 0.770 36 H 0.041 0.959 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.223 0.777 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.090 0.910 45 H 0.095 0.905 46 H 0.109 0.891 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -24.189 -5.596 -3.750 25.110 hybrid contribution 0.851 1.235 0.459 1.569 sum -23.339 -4.360 -3.291 23.970 Atomic orbital electron populations 1.20825 0.91149 1.02900 1.02442 1.19615 0.96018 0.91855 0.97858 1.20834 0.93800 0.97420 1.02829 1.21211 0.94459 0.96792 0.97650 1.19601 0.92896 0.93173 1.07070 1.18254 0.86846 0.84052 0.76533 1.90758 1.69667 1.31031 1.49498 1.45843 1.07427 1.08110 1.74774 1.22273 0.77575 0.99016 0.97792 0.87582 1.21847 0.87696 0.97474 0.92691 1.44242 1.07746 1.56826 1.23944 1.19092 0.89179 1.26170 1.01160 0.90136 1.24816 0.97835 0.99720 0.98037 1.69920 1.24440 1.36423 1.26399 0.86063 0.82135 0.77138 0.80104 1.21474 1.21643 1.20622 1.21808 0.90547 0.96779 0.88025 1.23463 0.99130 0.95645 0.80970 0.92594 1.86478 1.88384 1.42417 1.19465 1.20575 0.93448 0.94532 0.94300 1.20429 0.93689 0.94800 1.02207 1.21028 0.98432 0.90122 1.01897 1.22366 0.93949 0.98238 1.01558 1.21114 0.98306 0.89119 1.03291 0.90956 0.91394 0.91391 0.85330 0.85396 0.77006 0.95870 0.93147 0.93653 0.92097 0.93316 0.77718 0.90773 0.90248 0.90952 0.90452 0.89059 0.89737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 9.86 36.01 0.35 -0.39 16 2 C -0.05 -0.50 5.89 -104.48 -0.62 -1.12 16 3 C -0.13 -1.23 9.67 -39.69 -0.38 -1.62 16 4 C -0.08 -0.90 9.54 -39.22 -0.37 -1.28 16 5 C -0.12 -1.71 5.88 -104.92 -0.62 -2.33 16 6 C 0.56 9.29 7.77 -12.33 -0.10 9.19 16 7 O -0.53 -10.61 14.35 5.32 0.08 -10.53 16 8 N -0.71 -11.24 5.15 -52.67 -0.27 -11.51 16 9 C 0.14 2.69 3.15 -65.78 -0.21 2.48 16 10 H 0.11 2.37 7.54 -51.93 -0.39 1.98 16 11 C 0.13 2.84 6.93 -2.52 -0.02 2.83 16 12 N -0.60 -15.54 3.39 -170.07 -0.58 -16.11 16 13 C -0.23 -6.43 10.28 -15.06 -0.15 -6.59 16 14 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 15 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 16 N -0.92 -26.95 10.31 55.49 0.57 -26.38 16 17 Si 0.92 22.24 29.55 -169.99 -5.02 17.22 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 C 0.15 3.69 5.15 -3.06 -0.02 3.67 16 22 C 0.07 1.28 3.97 -24.89 -0.10 1.18 16 23 H 0.06 0.92 8.00 -51.93 -0.42 0.50 16 24 O -0.56 -9.94 13.40 -35.23 -0.47 -10.41 16 25 C -0.03 -0.36 6.03 -103.83 -0.63 -0.98 16 26 C -0.11 -1.18 6.00 -104.23 -0.63 -1.81 16 27 C -0.08 -0.64 6.26 -26.84 -0.17 -0.81 16 28 C -0.12 -1.09 7.08 -25.32 -0.18 -1.27 16 29 C -0.08 -0.99 5.57 -26.86 -0.15 -1.14 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.39 7.27 -51.93 -0.38 0.01 16 32 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 33 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.13 1.13 6.40 -52.49 -0.34 0.80 16 35 H 0.39 5.02 6.59 -40.82 -0.27 4.75 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.06 1.65 7.30 -51.93 -0.38 1.27 16 40 H 0.05 1.25 7.51 -51.93 -0.39 0.86 16 41 H 0.38 5.02 9.12 45.56 0.42 5.44 16 42 H 0.07 0.50 7.61 -51.93 -0.39 0.11 16 43 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.09 1.28 7.21 -51.93 -0.37 0.91 16 47 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 375.78 15.07 5.66 5.66 Total: -1.00 -34.01 375.78 -10.36 -44.37 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -6.26 Total: 8.00 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: -4.07 Total: -0.30 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: -0.28 Total: -54.00 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.40 Total: -20.94 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.01 -10.36 -44.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078247409.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.300 kcal (2) G-P(sol) polarization free energy of solvation -34.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds