Wall clock time and date at job start Tue Mar 31 2020 05:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38255 * 119.73488 * 2 1 4 4 C 1.37937 * 120.09900 * 180.02562 * 3 2 1 5 5 C 1.39496 * 119.76383 * 0.25408 * 4 3 2 6 6 C 1.47848 * 120.03782 * 179.72819 * 5 4 3 7 7 O 1.21551 * 119.99296 * 179.97438 * 6 5 4 8 8 N 1.34770 * 120.00042 * 359.97438 * 6 5 4 9 9 C 1.46499 * 119.99931 * 180.02562 * 8 6 5 10 10 H 1.08999 * 110.89066 * 31.11430 * 9 8 6 11 11 C 1.54917 * 111.00317 * 267.19399 * 9 8 6 12 12 N 1.47427 * 104.83288 * 204.91415 * 11 9 8 13 13 C 1.36932 * 125.64719 * 204.17474 * 12 11 9 14 14 H 1.08000 * 120.00380 * 359.96766 * 13 12 11 15 15 C 1.38816 * 119.99610 * 179.97438 * 13 12 11 16 16 N 1.31610 * 120.00165 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99603 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47293 * 89.99382 * 17 15 13 19 19 H 1.48497 * 109.47058 * 209.99437 * 17 15 13 20 20 H 1.48498 * 109.47271 * 329.99785 * 17 15 13 21 21 C 1.47023 * 108.70231 * 24.12746 * 12 11 9 22 22 C 1.54326 * 107.27211 * 358.94292 * 21 12 11 23 23 H 1.08992 * 110.72409 * 96.16855 * 22 21 12 24 24 O 1.42900 * 110.87090 * 219.37449 * 22 21 12 25 25 C 1.39773 * 119.91573 * 359.47397 * 5 4 3 26 26 C 1.37981 * 119.76210 * 0.52956 * 25 5 4 27 27 C 1.51398 * 109.75709 * 179.74506 * 26 25 5 28 28 C 1.54344 * 105.17425 * 17.17765 * 27 26 25 29 29 C 1.51344 * 130.40533 * 180.21908 * 25 5 4 30 30 H 1.08993 * 109.47733 * 90.00176 * 1 2 3 31 31 H 1.09005 * 109.46823 * 210.00023 * 1 2 3 32 32 H 1.08998 * 109.47117 * 329.99529 * 1 2 3 33 33 H 1.07997 * 119.95161 * 0.02562 * 3 2 1 34 34 H 1.08002 * 120.11462 * 179.97438 * 4 3 2 35 35 H 0.96999 * 120.00412 * 359.97438 * 8 6 5 36 36 H 1.08992 * 110.36361 * 323.75575 * 11 9 8 37 37 H 1.09002 * 110.36359 * 86.07633 * 11 9 8 38 38 H 0.97005 * 120.00109 * 180.02562 * 16 15 13 39 39 H 1.08991 * 109.88449 * 239.52075 * 21 12 11 40 40 H 1.09006 * 110.00925 * 118.42886 * 21 12 11 41 41 H 0.96708 * 113.99913 * 293.60504 * 24 22 21 42 42 H 1.08998 * 110.30104 * 136.10213 * 27 26 25 43 43 H 1.09003 * 110.29784 * 258.25283 * 27 26 25 44 44 H 1.08998 * 110.82926 * 91.89927 * 28 27 26 45 45 H 1.08994 * 110.83218 * 215.27245 * 28 27 26 46 46 H 1.08999 * 110.31090 * 44.19857 * 29 25 5 47 47 H 1.08997 * 110.39322 * 282.08139 * 29 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1927 1.2005 0.0000 4 6 3.5721 1.2093 -0.0005 5 6 4.2722 0.0028 -0.0064 6 6 5.7507 0.0051 -0.0131 7 8 6.3600 -1.0466 -0.0178 8 7 6.4227 1.1733 -0.0140 9 6 7.8877 1.1756 -0.0212 10 1 8.2751 0.3055 -0.5511 11 6 8.4499 1.2443 1.4207 12 7 9.7902 1.8409 1.2752 13 6 10.8320 1.6859 2.1501 14 1 10.7068 1.0835 3.0377 15 6 12.0492 2.3032 1.8963 16 7 12.2020 3.0370 0.8146 17 14 13.4702 2.0923 3.0903 18 1 14.2728 0.9054 2.6999 19 1 14.3289 3.3033 3.0567 20 1 12.9386 1.9002 4.4635 21 6 9.8232 2.6290 0.0344 22 6 8.4388 2.4905 -0.6334 23 1 7.7994 3.3342 -0.3741 24 8 8.5673 2.3728 -2.0517 25 6 3.5743 -1.2082 -0.0007 26 6 2.1945 -1.2036 -0.0002 27 6 1.6780 -2.6267 0.0001 28 6 2.8781 -3.4920 0.4398 29 6 4.0830 -2.6336 -0.0006 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8899 0.5139 33 1 1.6476 2.1328 0.0004 34 1 4.1080 2.1469 -0.0010 35 1 5.9365 2.0126 -0.0107 36 1 7.8185 1.8773 2.0442 37 1 8.5242 0.2439 1.8469 38 1 13.0527 3.4681 0.6370 39 1 10.5957 2.2421 -0.6300 40 1 10.0215 3.6762 0.2629 41 1 8.9081 3.1684 -2.4832 42 1 0.8568 -2.7308 0.7092 43 1 1.3530 -2.9113 -1.0007 44 1 2.8780 -3.6343 1.5204 45 1 2.8732 -4.4522 -0.0759 46 1 4.9040 -2.7423 0.7081 47 1 4.4070 -2.9213 -1.0007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078247409.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:13 Heat of formation + Delta-G solvation = -61.798490 kcal Electronic energy + Delta-G solvation = -28178.973066 eV Core-core repulsion = 24325.721511 eV Total energy + Delta-G solvation = -3853.251555 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.73301 -40.52236 -39.23329 -36.83832 -36.71717 -35.56596 -34.18547 -33.44680 -30.34030 -30.04472 -29.04606 -28.84462 -27.63500 -26.22147 -23.74908 -22.59450 -22.26452 -22.24573 -21.57680 -20.81268 -19.16002 -18.45203 -18.17711 -17.50750 -16.95054 -16.63976 -16.28521 -16.06481 -15.78536 -15.70931 -15.58319 -15.00502 -14.51229 -14.48181 -14.38872 -14.28096 -14.11780 -13.78278 -13.68008 -13.24770 -13.19225 -13.05641 -12.93650 -12.78345 -12.75756 -12.59609 -12.28187 -12.11075 -12.10517 -11.91811 -11.90952 -11.75619 -11.57770 -11.13035 -10.81714 -10.78878 -10.25648 -9.57712 -9.50393 -9.00185 -7.91172 -5.28777 -0.15538 0.37427 1.44084 1.46694 1.55095 1.81162 1.98654 2.45903 2.79803 3.08979 3.29350 3.41691 3.50779 3.61134 3.67941 3.87042 3.93755 4.01352 4.12414 4.14658 4.15960 4.19271 4.36242 4.39496 4.50477 4.52852 4.73679 4.76704 4.77378 4.86548 4.89497 4.93757 4.96310 5.02637 5.09116 5.18069 5.27503 5.30422 5.33336 5.34613 5.39459 5.42251 5.50322 5.62696 5.63779 5.97515 6.10560 6.48518 6.84091 7.01982 7.16526 7.65971 8.28712 9.18648 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.020422 B = 0.002621 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.747758 B =10679.669523 C =11259.988138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.049 4.049 3 C -0.129 4.129 4 C -0.082 4.082 5 C -0.153 4.153 6 C 0.552 3.448 7 O -0.576 6.576 8 N -0.697 5.697 9 C 0.153 3.847 10 H 0.071 0.929 11 C 0.132 3.868 12 N -0.621 5.621 13 C -0.249 4.249 14 H 0.081 0.919 15 C -0.061 4.061 16 N -0.948 5.948 17 Si 0.982 3.018 18 H -0.288 1.288 19 H -0.288 1.288 20 H -0.269 1.269 21 C 0.162 3.838 22 C 0.091 3.909 23 H 0.096 0.904 24 O -0.569 6.569 25 C -0.056 4.056 26 C -0.116 4.116 27 C -0.073 4.073 28 C -0.117 4.117 29 C -0.085 4.085 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.162 0.838 34 H 0.148 0.852 35 H 0.413 0.587 36 H 0.043 0.957 37 H 0.032 0.968 38 H 0.250 0.750 39 H 0.021 0.979 40 H 0.029 0.971 41 H 0.397 0.603 42 H 0.096 0.904 43 H 0.093 0.907 44 H 0.074 0.926 45 H 0.094 0.906 46 H 0.059 0.941 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.204 -3.353 -3.666 28.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.050 4.050 3 C -0.147 4.147 4 C -0.101 4.101 5 C -0.156 4.156 6 C 0.342 3.658 7 O -0.457 6.457 8 N -0.349 5.349 9 C 0.046 3.954 10 H 0.089 0.911 11 C 0.005 3.995 12 N -0.349 5.349 13 C -0.378 4.378 14 H 0.099 0.901 15 C -0.254 4.254 16 N -0.596 5.596 17 Si 0.810 3.190 18 H -0.215 1.215 19 H -0.214 1.214 20 H -0.193 1.193 21 C 0.036 3.964 22 C 0.031 3.969 23 H 0.113 0.887 24 O -0.377 6.377 25 C -0.057 4.057 26 C -0.117 4.117 27 C -0.110 4.110 28 C -0.155 4.155 29 C -0.122 4.122 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.179 0.821 34 H 0.165 0.835 35 H 0.252 0.748 36 H 0.061 0.939 37 H 0.050 0.950 38 H 0.059 0.941 39 H 0.039 0.961 40 H 0.047 0.953 41 H 0.247 0.753 42 H 0.114 0.886 43 H 0.111 0.889 44 H 0.093 0.907 45 H 0.112 0.888 46 H 0.078 0.922 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -27.795 -4.603 -3.534 28.394 hybrid contribution 1.891 0.915 0.360 2.131 sum -25.904 -3.687 -3.174 26.357 Atomic orbital electron populations 1.20911 0.88517 1.04199 1.03565 1.20090 0.97945 0.91310 0.95612 1.21253 0.93178 0.98878 1.01362 1.21463 0.95452 0.96304 0.96882 1.19511 0.90722 0.94951 1.10383 1.18871 0.88363 0.83358 0.75249 1.90734 1.70875 1.32571 1.51493 1.45584 1.05677 1.09061 1.74608 1.21748 0.79725 0.98116 0.95762 0.91085 1.21913 0.86542 0.96467 0.94535 1.44512 1.08742 1.57440 1.24230 1.19442 0.90364 1.26228 1.01768 0.90150 1.25669 1.00233 0.99684 0.99860 1.70122 1.24688 1.37027 1.27800 0.85034 0.78729 0.76776 0.78506 1.21483 1.21437 1.19327 1.21615 0.92784 0.94903 0.87053 1.23159 0.96286 0.96265 0.81189 0.88663 1.86445 1.88396 1.44273 1.18582 1.20818 0.94974 0.94357 0.95548 1.20765 0.92599 0.96587 1.01706 1.21078 0.98346 0.88289 1.03249 1.22367 0.92654 0.98570 1.01864 1.21096 0.98924 0.90399 1.01795 0.89710 0.90455 0.89848 0.82088 0.83466 0.74807 0.93930 0.94987 0.94058 0.96124 0.95302 0.75315 0.88567 0.88888 0.90746 0.88778 0.92244 0.91013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 9.86 71.24 0.70 -0.26 16 2 C -0.05 -0.77 5.89 -19.77 -0.12 -0.88 16 3 C -0.13 -1.97 9.67 22.20 0.21 -1.75 16 4 C -0.08 -1.62 9.54 22.50 0.21 -1.41 16 5 C -0.15 -4.18 5.88 -20.06 -0.12 -4.30 16 6 C 0.55 19.03 7.77 86.79 0.67 19.71 16 7 O -0.58 -24.63 14.35 -3.87 -0.06 -24.69 16 8 N -0.70 -21.87 5.15 -438.82 -2.26 -24.13 16 9 C 0.15 6.06 3.15 46.39 0.15 6.21 16 10 H 0.07 3.35 7.54 -2.39 -0.02 3.33 16 11 C 0.13 5.91 6.93 86.86 0.60 6.52 16 12 N -0.62 -33.19 3.39 -691.97 -2.35 -35.54 16 13 C -0.25 -14.46 10.28 84.04 0.86 -13.60 16 14 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 15 C -0.06 -3.53 5.49 84.86 0.47 -3.06 16 16 N -0.95 -56.84 10.31 21.65 0.22 -56.62 16 17 Si 0.98 46.44 29.55 68.60 2.03 48.47 16 18 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 19 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 21 C 0.16 8.00 5.15 86.73 0.45 8.44 16 22 C 0.09 3.38 3.97 31.78 0.13 3.50 16 23 H 0.10 2.85 8.00 -2.39 -0.02 2.83 16 24 O -0.57 -19.67 13.40 -148.98 -2.00 -21.67 16 25 C -0.06 -1.46 6.03 -19.35 -0.12 -1.58 16 26 C -0.12 -2.25 6.00 -19.61 -0.12 -2.37 16 27 C -0.07 -1.02 6.26 30.53 0.19 -0.83 16 28 C -0.12 -1.97 7.08 31.51 0.22 -1.75 16 29 C -0.09 -2.20 5.57 30.51 0.17 -2.03 16 30 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.08 0.53 7.27 -2.38 -0.02 0.52 16 32 H 0.08 0.48 8.08 -2.39 -0.02 0.46 16 33 H 0.16 1.40 8.06 -2.91 -0.02 1.37 16 34 H 0.15 2.16 6.40 -2.91 -0.02 2.15 16 35 H 0.41 9.71 6.59 -92.71 -0.61 9.10 16 36 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.25 14.50 8.31 -92.70 -0.77 13.73 16 39 H 0.02 1.17 7.30 -2.39 -0.02 1.15 16 40 H 0.03 1.52 7.51 -2.38 -0.02 1.50 16 41 H 0.40 10.06 9.12 -74.05 -0.68 9.38 16 42 H 0.10 0.94 7.61 -2.39 -0.02 0.92 16 43 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.06 1.86 7.21 -2.39 -0.02 1.84 16 47 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -78.49 375.78 -0.12 -78.61 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: -0.28 Total: 25.01 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: 4.57 Total: 10.56 kcal Atomic # 7 Polarization: -111.91 SS G_CDS: -4.38 Total: -116.30 kcal Atomic # 8 Polarization: -44.30 SS G_CDS: -2.05 Total: -46.35 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -78.49 -0.12 -78.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078247409.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.811 kcal (2) G-P(sol) polarization free energy of solvation -78.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds