Wall clock time and date at job start Tue Mar 31 2020 05:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 110.34757 * 2 1 4 4 O 1.21276 * 120.00422 * 122.12364 * 3 2 1 5 5 N 1.34777 * 119.99721 * 302.12859 * 3 2 1 6 6 C 1.46503 * 120.00183 * 180.02562 * 5 3 2 7 7 H 1.08998 * 110.88200 * 31.11826 * 6 5 3 8 8 C 1.54906 * 111.00396 * 267.19914 * 6 5 3 9 9 N 1.47429 * 104.83038 * 204.91707 * 8 6 5 10 10 C 1.36936 * 125.64494 * 204.17635 * 9 8 6 11 11 H 1.07994 * 120.00383 * 359.96515 * 10 9 8 12 12 C 1.38817 * 119.99666 * 179.97438 * 10 9 8 13 13 N 1.31615 * 120.00347 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99737 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47293 * 59.99990 * 14 12 10 16 16 H 1.48508 * 109.47141 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47149 * 300.00084 * 14 12 10 18 18 C 1.47020 * 108.70461 * 24.12181 * 9 8 6 19 19 C 1.54322 * 107.27075 * 358.94220 * 18 9 8 20 20 H 1.09003 * 110.71655 * 96.16981 * 19 18 9 21 21 O 1.42902 * 110.87481 * 219.36733 * 19 18 9 22 22 C 1.54340 * 110.30282 * 122.12580 * 2 1 3 23 23 C 1.54346 * 102.39589 * 145.26727 * 22 2 1 24 24 C 1.51374 * 105.17032 * 333.66122 * 23 22 2 25 25 C 1.38492 * 130.39369 * 197.17944 * 24 23 22 26 26 C 1.38106 * 120.21577 * 179.97438 * 25 24 23 27 27 C 1.38254 * 119.93398 * 0.02562 * 26 25 24 28 28 C 1.38103 * 119.93614 * 359.97438 * 27 26 25 29 29 C 1.38218 * 109.75861 * 17.44763 * 24 23 22 30 30 H 1.09001 * 109.46842 * 297.87328 * 1 2 3 31 31 H 1.08998 * 109.47181 * 57.87505 * 1 2 3 32 32 H 1.08994 * 109.47094 * 177.87510 * 1 2 3 33 33 H 0.97005 * 120.00477 * 359.97438 * 5 3 2 34 34 H 1.09000 * 110.36709 * 323.74789 * 8 6 5 35 35 H 1.08995 * 110.37312 * 86.07696 * 8 6 5 36 36 H 0.96996 * 120.00644 * 180.02562 * 13 12 10 37 37 H 1.09005 * 109.88573 * 239.52891 * 18 9 8 38 38 H 1.08995 * 110.00837 * 118.43322 * 18 9 8 39 39 H 0.96700 * 114.00036 * 293.61815 * 21 19 18 40 40 H 1.08998 * 110.82511 * 27.04129 * 22 2 1 41 41 H 1.09002 * 110.82656 * 263.49171 * 22 2 1 42 42 H 1.08998 * 110.30893 * 214.73848 * 23 22 2 43 43 H 1.08998 * 110.30316 * 92.57637 * 23 22 2 44 44 H 1.08000 * 119.89406 * 0.02562 * 25 24 23 45 45 H 1.08004 * 120.03466 * 179.97438 * 26 25 24 46 46 H 1.07997 * 120.02985 * 179.97438 * 27 26 25 47 47 H 1.08002 * 119.88983 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0541 1.4130 0.0000 4 8 2.7885 1.7874 0.8894 5 7 1.7063 2.2606 -0.9885 6 6 2.2161 3.6341 -0.9889 7 1 3.2040 3.6819 -0.5308 8 6 1.2276 4.5934 -0.2804 9 7 1.5094 5.9200 -0.8586 10 6 1.2488 7.1234 -0.2593 11 1 0.7980 7.1518 0.7216 12 6 1.5641 8.3069 -0.9128 13 7 2.1138 8.2723 -2.1082 14 14 1.2080 9.9485 -0.0957 15 1 1.9545 10.0361 1.1851 16 1 1.6343 11.0515 -0.9941 17 1 -0.2483 10.0630 0.1714 18 6 2.1176 5.7369 -2.1845 19 6 2.2409 4.2178 -2.4262 20 1 1.3947 3.8497 -3.0065 21 8 3.4732 3.9042 -3.0782 22 6 2.0656 -0.7698 1.2259 23 6 3.3425 -1.4338 0.6682 24 6 3.0967 -1.5787 -0.8184 25 6 3.7339 -2.3688 -1.7605 26 6 3.3317 -2.3364 -3.0813 27 6 2.2901 -1.5125 -3.4653 28 6 1.6534 -0.7238 -2.5273 29 6 2.0593 -0.7505 -1.2034 30 1 -0.3633 0.4805 0.9085 31 1 -0.3633 0.5465 -0.8703 32 1 -0.3633 -1.0269 -0.0381 33 1 1.1191 1.9611 -1.7001 34 1 0.1988 4.2997 -0.4887 35 1 1.4106 4.6013 0.7940 36 1 2.3344 9.0992 -2.5647 37 1 3.1055 6.1970 -2.2060 38 1 1.4839 6.1840 -2.9504 39 1 3.5392 4.2466 -3.9802 40 1 1.3490 -1.5227 1.5540 41 1 2.3084 -0.0845 2.0380 42 1 3.4899 -2.4127 1.1244 43 1 4.2090 -0.7975 0.8480 44 1 4.5474 -3.0131 -1.4613 45 1 3.8310 -2.9535 -3.8137 46 1 1.9746 -1.4856 -4.4978 47 1 0.8395 -0.0807 -2.8280 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078251619.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:02 Heat of formation + Delta-G solvation = -33.133065 kcal Electronic energy + Delta-G solvation = -29048.263325 eV Core-core repulsion = 25196.254796 eV Total energy + Delta-G solvation = -3852.008529 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.11126 -39.11560 -37.83753 -35.79579 -35.04910 -34.15529 -32.53082 -31.51693 -29.96238 -28.93298 -28.28551 -27.03594 -25.22280 -24.41010 -22.91279 -22.17898 -21.14848 -20.51891 -20.24056 -19.41723 -17.57586 -17.02863 -16.70097 -16.02380 -15.69569 -15.45635 -15.24342 -14.80303 -14.57266 -14.39025 -13.99995 -13.84026 -13.65658 -13.19762 -13.07667 -12.78081 -12.67069 -12.59530 -12.55318 -12.31300 -12.05125 -11.76910 -11.52387 -11.34155 -11.25498 -11.12332 -11.00270 -10.88584 -10.85753 -10.79354 -10.19292 -9.90148 -9.84070 -9.82644 -9.33090 -8.94741 -8.80798 -8.64416 -8.57911 -6.91501 -5.76023 -3.10701 1.16175 1.24073 2.80448 3.28034 3.40141 3.44083 3.45437 3.65707 4.19148 4.29926 4.44215 4.63691 4.69785 4.71497 4.84604 4.88891 4.98918 5.11495 5.21575 5.27836 5.34887 5.43160 5.44517 5.48491 5.58888 5.61867 5.66823 5.69760 5.81321 5.82989 5.85994 5.92141 6.04530 6.06200 6.10554 6.14795 6.30611 6.35048 6.49111 6.53800 6.61725 6.82757 6.90358 7.32679 7.46702 7.69254 7.75161 8.13075 8.17495 8.42440 9.15078 9.75240 10.38460 11.35604 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.020482 B = 0.003086 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.741379 B = 9070.715975 C = 9785.735271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.041 4.041 3 C 0.531 3.469 4 O -0.534 6.534 5 N -0.709 5.709 6 C 0.138 3.862 7 H 0.104 0.896 8 C 0.131 3.869 9 N -0.599 5.599 10 C -0.230 4.230 11 H 0.080 0.920 12 C -0.007 4.007 13 N -0.924 5.924 14 Si 0.915 3.085 15 H -0.284 1.284 16 H -0.290 1.290 17 H -0.285 1.285 18 C 0.154 3.846 19 C 0.069 3.931 20 H 0.055 0.945 21 O -0.562 6.562 22 C -0.102 4.102 23 C -0.084 4.084 24 C -0.085 4.085 25 C -0.110 4.110 26 C -0.116 4.116 27 C -0.121 4.121 28 C -0.097 4.097 29 C -0.088 4.088 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.394 0.606 34 H 0.023 0.977 35 H 0.050 0.950 36 H 0.254 0.746 37 H 0.061 0.939 38 H 0.048 0.952 39 H 0.375 0.625 40 H 0.078 0.922 41 H 0.096 0.904 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.120 0.880 45 H 0.123 0.877 46 H 0.124 0.876 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.796 -23.046 -2.211 23.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.044 4.044 3 C 0.316 3.684 4 O -0.410 6.410 5 N -0.359 5.359 6 C 0.033 3.967 7 H 0.122 0.878 8 C 0.003 3.997 9 N -0.327 5.327 10 C -0.358 4.358 11 H 0.098 0.902 12 C -0.203 4.203 13 N -0.571 5.571 14 Si 0.746 3.254 15 H -0.210 1.210 16 H -0.216 1.216 17 H -0.211 1.211 18 C 0.029 3.971 19 C 0.009 3.991 20 H 0.073 0.927 21 O -0.366 6.366 22 C -0.140 4.140 23 C -0.120 4.120 24 C -0.085 4.085 25 C -0.129 4.129 26 C -0.134 4.134 27 C -0.139 4.139 28 C -0.115 4.115 29 C -0.088 4.088 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.228 0.772 34 H 0.041 0.959 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.222 0.778 40 H 0.097 0.903 41 H 0.114 0.886 42 H 0.095 0.905 43 H 0.104 0.896 44 H 0.138 0.862 45 H 0.141 0.859 46 H 0.142 0.858 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.107 -22.809 -1.046 22.860 hybrid contribution -0.571 1.109 -0.772 1.466 sum -1.678 -21.700 -1.818 21.841 Atomic orbital electron populations 1.21831 0.91696 1.02933 1.02973 1.20332 0.97192 0.92352 0.94518 1.20117 0.80450 0.86168 0.81683 1.90686 1.36361 1.77586 1.36374 1.45858 1.50766 1.12332 1.26924 1.22267 0.99587 0.79320 0.95547 0.87775 1.21837 0.94972 0.85757 0.97088 1.44228 1.72463 0.99967 1.16061 1.19045 1.34790 0.81821 1.00130 0.90192 1.24813 1.00813 0.97832 0.96853 1.69909 1.47576 1.26130 1.13512 0.86146 0.77933 0.83052 0.78315 1.21029 1.21554 1.21113 1.21805 0.99580 0.87556 0.88199 1.23449 0.85445 0.98346 0.91890 0.92704 1.86484 1.38358 1.79759 1.32047 1.22324 0.96303 0.98850 0.96521 1.21085 0.99295 1.01219 0.90450 1.20651 0.95633 0.96067 0.96122 1.20615 0.99994 0.99601 0.92640 1.21052 0.97354 0.99259 0.95701 1.21008 0.96664 0.96993 0.99228 1.20593 0.99966 0.99258 0.91642 1.20202 0.97456 0.97691 0.93464 0.91307 0.91963 0.91231 0.77159 0.95911 0.93213 0.93603 0.92138 0.93351 0.77790 0.90305 0.88554 0.90543 0.89610 0.86238 0.85920 0.85781 0.86296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.21 37.16 0.31 -0.99 16 2 C -0.04 -0.48 0.73 -155.78 -0.11 -0.60 16 3 C 0.53 8.40 6.52 -10.99 -0.07 8.33 16 4 O -0.53 -10.44 15.11 5.56 0.08 -10.36 16 5 N -0.71 -11.01 5.05 -51.73 -0.26 -11.27 16 6 C 0.14 2.67 3.15 -65.78 -0.21 2.46 16 7 H 0.10 2.35 7.54 -51.93 -0.39 1.96 16 8 C 0.13 2.82 6.93 -2.53 -0.02 2.81 16 9 N -0.60 -15.45 3.39 -170.08 -0.58 -16.03 16 10 C -0.23 -6.46 10.28 -15.06 -0.15 -6.61 16 11 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 12 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 13 N -0.92 -26.86 10.31 55.49 0.57 -26.29 16 14 Si 0.92 22.15 29.55 -169.99 -5.02 17.13 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 18 C 0.15 3.69 5.15 -3.07 -0.02 3.68 16 19 C 0.07 1.30 3.97 -24.90 -0.10 1.20 16 20 H 0.06 0.91 8.00 -51.93 -0.42 0.49 16 21 O -0.56 -10.05 13.40 -35.23 -0.47 -10.52 16 22 C -0.10 -1.12 5.88 -25.32 -0.15 -1.27 16 23 C -0.08 -0.90 6.76 -26.85 -0.18 -1.08 16 24 C -0.08 -0.97 6.14 -104.20 -0.64 -1.61 16 25 C -0.11 -1.13 10.04 -39.54 -0.40 -1.52 16 26 C -0.12 -1.09 10.05 -39.62 -0.40 -1.49 16 27 C -0.12 -1.16 10.05 -39.63 -0.40 -1.56 16 28 C -0.10 -1.01 9.61 -39.54 -0.38 -1.39 16 29 C -0.09 -1.02 4.87 -104.20 -0.51 -1.53 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.54 7.40 -51.93 -0.38 0.16 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.39 5.08 7.53 -40.82 -0.31 4.77 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.06 1.64 7.30 -51.93 -0.38 1.26 16 38 H 0.05 1.24 7.51 -51.93 -0.39 0.85 16 39 H 0.38 5.11 9.12 45.56 0.42 5.53 16 40 H 0.08 0.68 7.91 -51.93 -0.41 0.27 16 41 H 0.10 1.19 6.97 -51.93 -0.36 0.83 16 42 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 45 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 46 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 47 H 0.12 1.04 7.80 -52.49 -0.41 0.63 16 LS Contribution 378.18 15.07 5.70 5.70 Total: -1.00 -33.84 378.18 -9.88 -43.72 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -6.39 Total: 9.37 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -3.52 Total: -1.46 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: -0.27 Total: -53.59 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.39 Total: -20.88 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.84 -9.88 -43.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078251619.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.590 kcal (2) G-P(sol) polarization free energy of solvation -33.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds