Wall clock time and date at job start Tue Mar 31 2020 05:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 110.34372 * 2 1 4 4 O 1.21281 * 119.99593 * 237.86890 * 3 2 1 5 5 N 1.34776 * 120.00097 * 57.87567 * 3 2 1 6 6 C 1.46501 * 119.99746 * 180.02562 * 5 3 2 7 7 H 1.08995 * 110.88727 * 31.11878 * 6 5 3 8 8 C 1.54906 * 111.00254 * 267.18995 * 6 5 3 9 9 N 1.47423 * 104.83650 * 204.91722 * 8 6 5 10 10 C 1.36931 * 125.65327 * 204.17780 * 9 8 6 11 11 H 1.07999 * 120.00044 * 359.97438 * 10 9 8 12 12 C 1.38813 * 120.00052 * 179.97438 * 10 9 8 13 13 N 1.31624 * 120.00127 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00125 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46937 * 60.00394 * 14 12 10 16 16 H 1.48493 * 109.47185 * 180.02562 * 14 12 10 17 17 H 1.48492 * 109.47055 * 300.00289 * 14 12 10 18 18 C 1.47026 * 108.69993 * 24.13224 * 9 8 6 19 19 C 1.54322 * 107.27174 * 358.93997 * 18 9 8 20 20 H 1.08999 * 110.71972 * 96.17082 * 19 18 9 21 21 O 1.42898 * 110.72431 * 219.44760 * 19 18 9 22 22 C 1.54346 * 110.30444 * 237.87185 * 2 1 3 23 23 C 1.54347 * 102.57063 * 214.82768 * 22 2 1 24 24 C 1.51370 * 105.17312 * 26.24711 * 23 22 2 25 25 C 1.38493 * 130.39471 * 162.81346 * 24 23 22 26 26 C 1.38098 * 120.21764 * 180.02562 * 25 24 23 27 27 C 1.38256 * 119.93662 * 359.97438 * 26 25 24 28 28 C 1.38105 * 119.93143 * 359.97438 * 27 26 25 29 29 C 1.38216 * 109.75579 * 342.81356 * 24 23 22 30 30 H 1.09006 * 109.46799 * 182.12686 * 1 2 3 31 31 H 1.08999 * 109.47475 * 302.12545 * 1 2 3 32 32 H 1.08995 * 109.47562 * 62.13113 * 1 2 3 33 33 H 0.96995 * 120.00213 * 359.97438 * 5 3 2 34 34 H 1.08999 * 110.37328 * 323.75765 * 8 6 5 35 35 H 1.09004 * 110.36656 * 86.08179 * 8 6 5 36 36 H 0.96999 * 119.99629 * 179.97438 * 13 12 10 37 37 H 1.09005 * 109.88366 * 239.52580 * 18 9 8 38 38 H 1.08997 * 110.01443 * 118.43367 * 18 9 8 39 39 H 0.96698 * 113.99665 * 293.52343 * 21 19 18 40 40 H 1.09002 * 110.82237 * 96.50142 * 22 2 1 41 41 H 1.09005 * 110.81964 * 333.14976 * 22 2 1 42 42 H 1.09000 * 110.30389 * 145.17630 * 23 22 2 43 43 H 1.09004 * 110.29952 * 267.32139 * 23 22 2 44 44 H 1.08006 * 119.89043 * 0.02562 * 25 24 23 45 45 H 1.08002 * 120.03418 * 179.97438 * 26 25 24 46 46 H 1.07997 * 120.03559 * 179.97438 * 27 26 25 47 47 H 1.08004 * 119.89005 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0539 1.4130 0.0000 4 8 2.7885 1.7873 -0.8895 5 7 1.7063 2.2606 0.9885 6 6 2.2152 3.6344 0.9881 7 1 2.3666 3.9924 -0.0302 8 6 3.5200 3.7433 1.8158 9 7 3.5787 5.1527 2.2443 10 6 4.7154 5.8379 2.5809 11 1 5.6748 5.3433 2.5444 12 6 4.6347 7.1682 2.9691 13 7 3.4655 7.7711 3.0131 14 14 6.1854 8.1028 3.4290 15 1 7.1132 8.1231 2.2697 16 1 5.8311 9.4951 3.8045 17 1 6.8443 7.4329 4.5788 18 6 2.2145 5.7010 2.2493 19 6 1.2678 4.5786 1.7745 20 1 0.8265 4.0605 2.6259 21 8 0.2514 5.1031 0.9178 22 6 2.0656 -0.7698 -1.2259 23 6 3.3420 -1.4378 -0.6717 24 6 3.0993 -1.5833 0.8153 25 6 3.7364 -2.3761 1.7553 26 6 3.3375 -2.3437 3.0770 27 6 2.2991 -1.5172 3.4642 28 6 1.6631 -0.7251 2.5285 29 6 2.0611 -0.7570 1.2023 30 1 -0.3633 -1.0270 0.0381 31 1 -0.3634 0.5465 0.8703 32 1 -0.3634 0.4803 -0.9084 33 1 1.1185 1.9614 1.6997 34 1 3.4753 3.0847 2.6832 35 1 4.3834 3.4988 1.1969 36 1 3.4091 8.7006 3.2847 37 1 2.1537 6.5500 1.5684 38 1 1.9421 6.0142 3.2572 39 1 -0.3673 5.6996 1.3610 40 1 2.3082 -0.0845 -2.0381 41 1 1.3475 -1.5205 -1.5560 42 1 3.4857 -2.4167 -1.1291 43 1 4.2098 -0.8037 -0.8531 44 1 4.5480 -3.0217 1.4537 45 1 3.8362 -2.9635 3.8075 46 1 1.9855 -1.4909 4.4973 47 1 0.8523 -0.0793 2.8318 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078251620.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:05 Heat of formation + Delta-G solvation = -33.225109 kcal Electronic energy + Delta-G solvation = -29122.639997 eV Core-core repulsion = 25270.627477 eV Total energy + Delta-G solvation = -3852.012520 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.08496 -39.10747 -37.83891 -35.78173 -35.05491 -34.15224 -32.51875 -31.50790 -29.95305 -28.91403 -28.28462 -27.01520 -25.24074 -24.39324 -22.89420 -22.16873 -21.13521 -20.51795 -20.22391 -19.42337 -17.57052 -17.01993 -16.70302 -16.03161 -15.67290 -15.38397 -15.29893 -14.78444 -14.58692 -14.32778 -14.02680 -13.83941 -13.65681 -13.16342 -13.07747 -12.77409 -12.66676 -12.60605 -12.50763 -12.35102 -12.04044 -11.75300 -11.52883 -11.34109 -11.23515 -11.09596 -11.00524 -10.88422 -10.83871 -10.78956 -10.19080 -9.90073 -9.83598 -9.82328 -9.34562 -8.92015 -8.79786 -8.61095 -8.60032 -6.90609 -5.75440 -3.09865 1.18213 1.26249 2.80370 3.28436 3.40709 3.44529 3.45995 3.67557 4.20522 4.29978 4.44551 4.62824 4.69847 4.72485 4.87121 4.90886 4.99955 5.12686 5.20681 5.28836 5.36498 5.44415 5.45240 5.49166 5.58410 5.62816 5.68187 5.69056 5.82389 5.83174 5.86411 5.93089 6.05148 6.07690 6.10661 6.15213 6.32462 6.37690 6.50848 6.55056 6.63032 6.84890 6.91062 7.32752 7.46961 7.69504 7.75424 8.11546 8.18174 8.42450 9.15952 9.75985 10.39284 11.36279 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.014382 B = 0.003436 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.433872 B = 8147.653907 C = 8880.431457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.040 4.040 3 C 0.531 3.469 4 O -0.534 6.534 5 N -0.709 5.709 6 C 0.138 3.862 7 H 0.105 0.895 8 C 0.131 3.869 9 N -0.599 5.599 10 C -0.229 4.229 11 H 0.080 0.920 12 C -0.007 4.007 13 N -0.924 5.924 14 Si 0.915 3.085 15 H -0.284 1.284 16 H -0.290 1.290 17 H -0.285 1.285 18 C 0.154 3.846 19 C 0.068 3.932 20 H 0.056 0.944 21 O -0.563 6.563 22 C -0.103 4.103 23 C -0.083 4.083 24 C -0.084 4.084 25 C -0.110 4.110 26 C -0.115 4.115 27 C -0.121 4.121 28 C -0.097 4.097 29 C -0.089 4.089 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.394 0.606 34 H 0.023 0.977 35 H 0.049 0.951 36 H 0.254 0.746 37 H 0.061 0.939 38 H 0.048 0.952 39 H 0.376 0.624 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.120 0.880 45 H 0.123 0.877 46 H 0.125 0.875 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.279 -20.670 -2.122 22.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.043 4.043 3 C 0.316 3.684 4 O -0.410 6.410 5 N -0.359 5.359 6 C 0.033 3.967 7 H 0.123 0.877 8 C 0.004 3.996 9 N -0.327 5.327 10 C -0.357 4.357 11 H 0.098 0.902 12 C -0.203 4.203 13 N -0.572 5.572 14 Si 0.745 3.255 15 H -0.210 1.210 16 H -0.215 1.215 17 H -0.211 1.211 18 C 0.029 3.971 19 C 0.008 3.992 20 H 0.074 0.926 21 O -0.367 6.367 22 C -0.140 4.140 23 C -0.120 4.120 24 C -0.084 4.084 25 C -0.128 4.128 26 C -0.133 4.133 27 C -0.139 4.139 28 C -0.115 4.115 29 C -0.089 4.089 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.228 0.772 34 H 0.041 0.959 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.223 0.777 40 H 0.114 0.886 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.104 0.896 44 H 0.138 0.862 45 H 0.141 0.859 46 H 0.143 0.857 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.376 -20.512 -3.145 22.024 hybrid contribution 0.237 0.805 1.314 1.559 sum -7.139 -19.707 -1.831 21.040 Atomic orbital electron populations 1.21816 0.91757 1.02870 1.02882 1.20376 0.97123 0.92291 0.94549 1.20116 0.80480 0.86271 0.81543 1.90687 1.36298 1.77400 1.36622 1.45857 1.50722 1.12412 1.26900 1.22266 0.93668 0.79101 1.01666 0.87693 1.21827 0.94690 0.88009 0.95084 1.44225 1.03270 1.06069 1.79137 1.19043 0.85334 0.93039 1.38276 0.90245 1.24803 0.97198 0.96671 1.01602 1.69915 1.21938 1.11595 1.53745 0.86149 0.82064 0.78927 0.78345 1.21034 1.21534 1.21122 1.21811 0.82697 0.92277 1.00366 1.23456 0.88764 0.95849 0.91099 0.92636 1.86469 1.43645 1.66801 1.39823 1.22317 0.96350 0.98831 0.96514 1.21082 0.99278 1.01201 0.90461 1.20636 0.95564 0.96105 0.96130 1.20618 0.99994 0.99553 0.92645 1.21060 0.97320 0.99226 0.95686 1.21022 0.96671 0.96899 0.99282 1.20599 1.00046 0.99284 0.91612 1.20259 0.97511 0.97757 0.93408 0.91254 0.91995 0.91420 0.77155 0.95933 0.93319 0.93621 0.92109 0.93365 0.77737 0.88632 0.90363 0.90547 0.89555 0.86211 0.85888 0.85736 0.86291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.22 37.16 0.31 -0.97 16 2 C -0.04 -0.48 0.74 -155.62 -0.11 -0.59 16 3 C 0.53 8.41 6.53 -10.99 -0.07 8.34 16 4 O -0.53 -10.45 15.11 5.56 0.08 -10.37 16 5 N -0.71 -11.02 5.05 -51.73 -0.26 -11.28 16 6 C 0.14 2.68 3.15 -65.78 -0.21 2.47 16 7 H 0.11 2.34 7.54 -51.93 -0.39 1.95 16 8 C 0.13 2.90 6.93 -2.53 -0.02 2.88 16 9 N -0.60 -15.57 3.39 -170.07 -0.58 -16.15 16 10 C -0.23 -6.48 10.28 -15.06 -0.15 -6.64 16 11 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 12 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 13 N -0.92 -26.92 10.31 55.49 0.57 -26.35 16 14 Si 0.92 22.25 29.55 -169.99 -5.02 17.23 16 15 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 16 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 C 0.15 3.69 5.15 -3.06 -0.02 3.67 16 19 C 0.07 1.28 3.98 -24.89 -0.10 1.18 16 20 H 0.06 0.91 8.00 -51.93 -0.42 0.50 16 21 O -0.56 -9.78 13.39 -35.23 -0.47 -10.26 16 22 C -0.10 -1.12 5.87 -25.32 -0.15 -1.27 16 23 C -0.08 -0.90 6.76 -26.85 -0.18 -1.08 16 24 C -0.08 -0.99 6.14 -104.21 -0.64 -1.62 16 25 C -0.11 -1.16 10.04 -39.54 -0.40 -1.55 16 26 C -0.11 -1.13 10.05 -39.63 -0.40 -1.52 16 27 C -0.12 -1.20 10.05 -39.62 -0.40 -1.60 16 28 C -0.10 -1.04 9.64 -39.53 -0.38 -1.42 16 29 C -0.09 -1.05 4.89 -104.05 -0.51 -1.56 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.54 7.43 -51.93 -0.39 0.15 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.39 5.08 7.54 -40.82 -0.31 4.77 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 37 H 0.06 1.64 7.29 -51.93 -0.38 1.26 16 38 H 0.05 1.24 7.51 -51.93 -0.39 0.85 16 39 H 0.38 4.94 9.12 45.56 0.42 5.36 16 40 H 0.10 1.18 6.97 -51.93 -0.36 0.82 16 41 H 0.08 0.68 7.91 -51.93 -0.41 0.27 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 45 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 46 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 47 H 0.12 1.06 7.83 -52.48 -0.41 0.64 16 LS Contribution 378.33 15.07 5.70 5.70 Total: -1.00 -33.83 378.33 -9.89 -43.72 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -6.39 Total: 9.32 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -3.52 Total: -1.57 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: -0.27 Total: -53.78 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.39 Total: -20.62 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.83 -9.89 -43.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078251620.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.498 kcal (2) G-P(sol) polarization free energy of solvation -33.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds