Wall clock time and date at job start Tue Mar 31 2020 05:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86798 * 120.00107 * 2 1 4 4 H 1.48502 * 109.47446 * 269.99963 * 3 2 1 5 5 H 1.48502 * 109.47268 * 30.00240 * 3 2 1 6 6 H 1.48503 * 109.47340 * 149.99927 * 3 2 1 7 7 C 1.38814 * 120.00142 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00190 * 179.97438 * 7 2 1 9 9 N 1.36930 * 119.99789 * 0.02562 * 7 2 1 10 10 C 1.47430 * 125.64968 * 0.02562 * 9 7 2 11 11 C 1.54914 * 104.92868 * 204.15322 * 10 9 7 12 12 H 1.09004 * 111.00222 * 81.00775 * 11 10 9 13 13 O 1.42891 * 111.00480 * 204.82024 * 11 10 9 14 14 C 1.55160 * 101.58303 * 322.93728 * 11 10 9 15 15 H 1.09003 * 110.71711 * 276.95817 * 14 11 10 16 16 N 1.46500 * 110.72123 * 153.86298 * 14 11 10 17 17 C 1.46501 * 119.99899 * 293.28178 * 16 14 11 18 18 C 1.50700 * 109.47303 * 82.66882 * 17 16 14 19 19 C 1.38237 * 119.99840 * 263.95612 * 18 17 16 20 20 C 1.38235 * 119.99688 * 179.80990 * 19 18 17 21 21 C 1.38233 * 120.00323 * 0.41251 * 20 19 18 22 22 C 1.38233 * 119.99926 * 359.81429 * 21 20 19 23 23 C 1.38234 * 120.00011 * 0.02562 * 22 21 20 24 24 C 1.34778 * 119.99765 * 113.27656 * 16 14 11 25 25 O 1.21281 * 119.99931 * 2.02160 * 24 16 14 26 26 C 1.50699 * 119.99512 * 182.01908 * 24 16 14 27 27 C 1.53001 * 117.49420 * 240.52636 * 26 24 16 28 28 C 1.53000 * 60.00103 * 252.51474 * 27 26 24 29 29 C 1.47293 * 125.79445 * 180.02562 * 9 7 2 30 30 H 0.97008 * 120.00228 * 359.97438 * 1 2 3 31 31 H 1.09003 * 110.36593 * 85.26405 * 10 9 7 32 32 H 1.09000 * 110.36629 * 323.04475 * 10 9 7 33 33 H 0.96705 * 114.00347 * 298.55146 * 13 11 10 34 34 H 1.08999 * 109.47185 * 202.66739 * 17 16 14 35 35 H 1.08998 * 109.47052 * 322.66786 * 17 16 14 36 36 H 1.07997 * 119.99853 * 359.97438 * 19 18 17 37 37 H 1.08006 * 119.99712 * 180.20008 * 20 19 18 38 38 H 1.07996 * 120.00277 * 179.78625 * 21 20 19 39 39 H 1.08001 * 120.00348 * 179.97438 * 22 21 20 40 40 H 1.08004 * 120.00426 * 179.97438 * 23 22 21 41 41 H 1.09000 * 115.55363 * 26.23753 * 26 24 16 42 42 H 1.08996 * 117.50146 * 0.02562 * 27 26 24 43 43 H 1.09004 * 117.49496 * 145.02747 * 27 26 24 44 44 H 1.09003 * 117.50257 * 252.51627 * 28 27 26 45 45 H 1.08994 * 117.49870 * 107.48977 * 28 27 26 46 46 H 1.08994 * 109.85551 * 59.50003 * 29 9 7 47 47 H 1.08997 * 109.87095 * 298.35605 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1416 -2.5331 -0.0005 11 6 -0.4048 -3.9313 0.6124 12 1 -0.3557 -3.8963 1.7007 13 8 -1.6609 -4.4538 0.1756 14 6 0.7741 -4.7542 0.0288 15 1 0.5403 -5.1028 -0.9771 16 7 1.1015 -5.8829 0.9035 17 6 1.6559 -5.6390 2.2375 18 6 0.5356 -5.3401 3.2001 19 6 0.1993 -4.0297 3.4839 20 6 -0.8310 -3.7556 4.3639 21 6 -1.5192 -4.7918 4.9667 22 6 -1.1798 -6.1022 4.6866 23 6 -0.1518 -6.3764 3.8040 24 6 0.8926 -7.1455 0.4810 25 8 0.4681 -7.3485 -0.6368 26 6 1.1866 -8.3050 1.3976 27 6 2.2361 -9.3195 0.9390 28 6 0.7537 -9.6980 0.9357 29 6 1.9295 -3.7314 0.0016 30 1 -0.4851 0.8401 0.0004 31 1 -0.5266 -2.4869 -1.0193 32 1 -0.5999 -1.7576 0.6131 33 1 -2.4220 -3.9165 0.4347 34 1 2.1971 -6.5235 2.5733 35 1 2.3373 -4.7892 2.1979 36 1 0.7396 -3.2201 3.0160 37 1 -1.0959 -2.7317 4.5831 38 1 -2.3218 -4.5776 5.6569 39 1 -1.7173 -6.9118 5.1578 40 1 0.1137 -7.4002 3.5854 41 1 1.1284 -8.0878 2.4641 42 1 2.7142 -9.1480 -0.0254 43 1 2.8688 -9.7698 1.7040 44 1 0.4110 -10.3972 1.6985 45 1 0.2562 -9.7756 -0.0310 46 1 2.5551 -3.8554 0.8854 47 1 2.5261 -3.8701 -0.8999 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079122581.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:31 Heat of formation + Delta-G solvation = 22.238048 kcal Electronic energy + Delta-G solvation = -29991.048534 eV Core-core repulsion = 26141.441077 eV Total energy + Delta-G solvation = -3849.607457 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.53998 -38.97473 -37.94174 -36.02832 -35.30316 -34.79422 -32.13600 -31.24752 -30.85993 -28.66606 -27.24194 -26.22488 -24.98125 -23.50911 -22.58513 -22.53598 -21.55463 -20.43356 -19.97979 -18.63643 -17.69086 -17.13802 -17.09712 -16.08431 -15.91972 -15.40660 -15.09051 -14.87780 -14.75099 -14.23191 -14.12438 -13.87186 -13.54579 -13.31676 -13.08051 -12.86252 -12.61439 -12.36128 -12.29167 -12.02187 -11.68350 -11.59893 -11.40685 -11.34842 -11.17350 -10.98024 -10.87783 -10.84996 -10.57205 -10.53241 -10.18554 -9.93307 -9.74036 -9.65375 -9.28192 -8.80955 -8.75794 -8.45457 -8.22984 -6.95126 -5.74302 -3.18109 1.35610 1.48938 2.62332 3.12496 3.34817 3.40259 3.41647 3.82221 3.90126 4.39092 4.52458 4.60612 4.76156 4.77297 4.81300 4.86136 4.99091 5.10485 5.18629 5.28558 5.36333 5.45186 5.47617 5.48854 5.52992 5.61570 5.67517 5.71342 5.83433 5.89187 5.95043 6.02453 6.06763 6.13879 6.19799 6.24332 6.46333 6.52219 6.57131 6.64024 6.71367 6.95948 7.08252 7.36111 7.49567 7.62536 7.71704 8.18114 8.32026 8.40973 9.10212 9.70659 10.34013 11.28684 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.012687 B = 0.004524 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.402392 B = 6187.154680 C = 7336.958130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.916 3.084 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.225 4.225 8 H 0.080 0.920 9 N -0.597 5.597 10 C 0.127 3.873 11 C 0.041 3.959 12 H 0.088 0.912 13 O -0.563 6.563 14 C 0.137 3.863 15 H 0.108 0.892 16 N -0.588 5.588 17 C 0.137 3.863 18 C -0.105 4.105 19 C -0.092 4.092 20 C -0.121 4.121 21 C -0.117 4.117 22 C -0.126 4.126 23 C -0.110 4.110 24 C 0.547 3.453 25 O -0.537 6.537 26 C -0.199 4.199 27 C -0.152 4.152 28 C -0.148 4.148 29 C 0.128 3.872 30 H 0.253 0.747 31 H 0.020 0.980 32 H 0.111 0.889 33 H 0.371 0.629 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.136 0.864 37 H 0.124 0.876 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.124 0.876 42 H 0.100 0.900 43 H 0.103 0.897 44 H 0.101 0.899 45 H 0.107 0.893 46 H 0.036 0.964 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.507 -14.881 10.831 18.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.746 3.254 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.353 4.353 8 H 0.098 0.902 9 N -0.324 5.324 10 C 0.001 3.999 11 C -0.019 4.019 12 H 0.105 0.895 13 O -0.367 6.367 14 C 0.034 3.966 15 H 0.126 0.874 16 N -0.318 5.318 17 C 0.014 3.986 18 C -0.106 4.106 19 C -0.110 4.110 20 C -0.139 4.139 21 C -0.135 4.135 22 C -0.144 4.144 23 C -0.128 4.128 24 C 0.335 3.665 25 O -0.414 6.414 26 C -0.220 4.220 27 C -0.189 4.189 28 C -0.185 4.185 29 C 0.001 3.999 30 H 0.064 0.936 31 H 0.038 0.962 32 H 0.128 0.872 33 H 0.217 0.783 34 H 0.108 0.892 35 H 0.117 0.883 36 H 0.154 0.846 37 H 0.142 0.858 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.142 0.858 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.125 0.875 46 H 0.053 0.947 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 0.651 -15.223 9.951 18.198 hybrid contribution -0.021 1.470 0.215 1.486 sum 0.630 -13.753 10.166 17.114 Atomic orbital electron populations 1.69764 1.04929 1.24940 1.57247 1.24786 0.95714 0.97741 1.02085 0.86062 0.78520 0.83160 0.77669 1.21557 1.21616 1.20618 1.19070 0.90535 0.82051 1.43631 0.90232 1.44312 1.01520 0.99405 1.87191 1.22592 0.85301 0.92686 0.99330 1.24433 0.82893 0.95336 0.99201 0.89517 1.86440 1.15883 1.53090 1.81259 1.22136 0.94413 0.85070 0.95006 0.87435 1.47723 1.63339 1.05580 1.15175 1.20646 0.93601 1.03552 0.80770 1.20222 0.98743 0.93669 0.97960 1.21197 0.97216 0.96468 0.96153 1.21197 0.96158 0.99403 0.97133 1.21137 0.99619 0.92892 0.99892 1.21041 0.97819 0.96638 0.98935 1.21042 0.96328 0.98395 0.97067 1.19553 0.76994 0.83064 0.86904 1.90681 1.45346 1.84550 1.20861 1.22439 1.08677 0.90698 1.00213 1.22923 0.92248 1.00429 1.03335 1.22932 0.97294 0.94449 1.03856 1.21629 0.93565 0.85731 0.98984 0.93604 0.96153 0.87161 0.78298 0.89169 0.88335 0.84614 0.85834 0.86377 0.86422 0.86437 0.85837 0.88154 0.87907 0.88094 0.87457 0.94677 0.95026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.78 10.09 55.49 0.56 -25.22 16 2 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 3 Si 0.92 21.34 29.55 -169.99 -5.02 16.32 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 7 C -0.22 -5.99 10.28 -15.06 -0.15 -6.14 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.60 -14.69 3.40 -169.85 -0.58 -15.27 16 10 C 0.13 3.04 5.62 -2.52 -0.01 3.03 16 11 C 0.04 0.83 3.92 -24.58 -0.10 0.74 16 12 H 0.09 1.63 2.57 -51.93 -0.13 1.50 16 13 O -0.56 -11.28 13.47 -35.23 -0.47 -11.76 16 14 C 0.14 2.71 3.08 -66.09 -0.20 2.51 16 15 H 0.11 2.43 7.04 -51.93 -0.37 2.06 16 16 N -0.59 -9.62 2.55 -165.38 -0.42 -10.04 16 17 C 0.14 1.82 5.14 -5.19 -0.03 1.80 16 18 C -0.10 -1.42 4.68 -104.62 -0.49 -1.91 16 19 C -0.09 -1.35 6.65 -39.58 -0.26 -1.62 16 20 C -0.12 -1.61 10.05 -39.58 -0.40 -2.01 16 21 C -0.12 -1.37 10.05 -39.59 -0.40 -1.77 16 22 C -0.13 -1.44 10.05 -39.58 -0.40 -1.84 16 23 C -0.11 -1.33 9.60 -39.58 -0.38 -1.71 16 24 C 0.55 9.07 7.45 -10.99 -0.08 8.99 16 25 O -0.54 -11.05 15.68 5.56 0.09 -10.96 16 26 C -0.20 -2.35 5.00 -91.77 -0.46 -2.81 16 27 C -0.15 -1.47 10.23 -26.73 -0.27 -1.74 16 28 C -0.15 -1.54 10.04 -26.73 -0.27 -1.81 16 29 C 0.13 2.65 6.87 -2.92 -0.02 2.63 16 30 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.11 2.88 5.87 -51.93 -0.30 2.57 16 33 H 0.37 6.05 9.11 45.56 0.42 6.46 16 34 H 0.09 0.94 6.15 -51.93 -0.32 0.62 16 35 H 0.10 1.35 5.59 -51.93 -0.29 1.06 16 36 H 0.14 2.27 7.68 -52.49 -0.40 1.87 16 37 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 38 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 39 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.12 1.21 5.45 -52.48 -0.29 0.92 16 41 H 0.12 1.21 4.02 -51.93 -0.21 1.01 16 42 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.11 1.32 7.69 -51.93 -0.40 0.92 16 46 H 0.04 0.67 5.47 -51.93 -0.28 0.39 16 47 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 367.92 15.07 5.54 5.54 Total: -1.00 -32.54 367.92 -9.83 -42.37 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -5.51 Total: 12.98 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -4.02 Total: -3.97 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: -0.44 Total: -50.52 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.39 Total: -22.72 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.54 -9.83 -42.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079122581.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.612 kcal (2) G-P(sol) polarization free energy of solvation -32.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds