Wall clock time and date at job start Tue Mar 31 2020 05:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 119.99914 * 2 1 4 4 H 1.48502 * 109.47119 * 264.53429 * 3 2 1 5 5 H 1.48503 * 109.47079 * 24.52844 * 3 2 1 6 6 H 1.48495 * 109.47505 * 144.52978 * 3 2 1 7 7 C 1.38809 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99964 * 337.61727 * 7 2 1 9 9 N 1.36936 * 120.00000 * 157.62148 * 7 2 1 10 10 C 1.47022 * 125.64408 * 161.51538 * 9 7 2 11 11 C 1.54329 * 107.26903 * 178.90619 * 10 9 7 12 12 H 1.09003 * 110.72130 * 96.34634 * 11 10 9 13 13 N 1.46493 * 110.72153 * 219.44495 * 11 10 9 14 14 C 1.34785 * 120.00124 * 271.15633 * 13 11 10 15 15 O 1.21280 * 119.99635 * 359.97438 * 14 13 11 16 16 C 1.50698 * 120.00089 * 180.02562 * 14 13 11 17 17 H 1.09002 * 109.46684 * 299.99860 * 16 14 13 18 18 C 1.50697 * 109.46898 * 180.02562 * 16 14 13 19 19 C 1.38233 * 120.00307 * 119.99945 * 18 16 14 20 20 C 1.38227 * 120.00264 * 180.02562 * 19 18 16 21 21 C 1.38238 * 119.99744 * 0.25858 * 20 19 18 22 22 C 1.38232 * 120.00289 * 359.46464 * 21 20 19 23 23 C 1.38235 * 119.99490 * 0.55263 * 22 21 20 24 24 C 1.53001 * 109.47175 * 59.99759 * 16 14 13 25 25 C 1.52995 * 117.50030 * 248.74573 * 24 16 14 26 26 C 1.52998 * 117.49842 * 180.08583 * 24 16 14 27 27 C 1.55159 * 103.10239 * 337.89670 * 11 10 9 28 28 H 1.08998 * 111.00717 * 153.48376 * 27 11 10 29 29 O 1.42894 * 111.00348 * 277.34272 * 27 11 10 30 30 C 1.47419 * 125.64793 * 341.47603 * 9 7 2 31 31 H 0.96998 * 120.00527 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.88627 * 59.49185 * 10 9 7 33 33 H 1.09001 * 110.01128 * 298.38863 * 10 9 7 34 34 H 0.97003 * 120.00460 * 91.15502 * 13 11 10 35 35 H 1.08002 * 119.99984 * 359.97438 * 19 18 16 36 36 H 1.07999 * 120.00656 * 179.97438 * 20 19 18 37 37 H 1.08001 * 119.99636 * 179.72470 * 21 20 19 38 38 H 1.08002 * 120.00448 * 180.27897 * 22 21 20 39 39 H 1.08001 * 119.99760 * 179.71924 * 23 22 21 40 40 H 1.09000 * 115.54708 * 34.41821 * 24 16 14 41 41 H 1.09004 * 117.49798 * 0.02562 * 25 24 16 42 42 H 1.08995 * 117.50281 * 145.02030 * 25 24 16 43 43 H 1.08996 * 117.50176 * 214.98585 * 26 24 16 44 44 H 1.09003 * 117.49848 * 359.97438 * 26 24 16 45 45 H 0.96703 * 114.00414 * 180.02562 * 29 27 11 46 46 H 1.08995 * 110.36858 * 323.00116 * 30 9 7 47 47 H 1.09003 * 110.36661 * 85.21828 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6131 1.9798 -1.3937 5 1 1.3945 2.6833 0.5812 6 1 3.4851 1.4764 0.8124 7 6 2.0102 -1.2021 0.0005 8 1 1.5313 -2.1020 0.3571 9 7 3.3023 -1.2469 -0.4509 10 6 4.2725 -2.3144 -0.1670 11 6 5.5798 -1.9530 -0.9033 12 1 6.2743 -1.4489 -0.2313 13 7 6.1969 -3.1494 -1.4812 14 6 7.0646 -3.8791 -0.7523 15 8 7.3349 -3.5449 0.3817 16 6 7.6999 -5.1095 -1.3470 17 1 6.9228 -5.8224 -1.6226 18 6 8.6216 -5.7384 -0.3341 19 6 8.3980 -7.0338 0.0934 20 6 9.2431 -7.6104 1.0229 21 6 10.3088 -6.8897 1.5289 22 6 10.5358 -5.5963 1.0972 23 6 9.6904 -5.0196 0.1679 24 6 8.4992 -4.7197 -2.5920 25 6 7.9713 -5.1936 -3.9475 26 6 9.2228 -5.8375 -3.3456 27 6 5.0994 -0.9891 -2.0203 28 1 5.8956 -0.3058 -2.3158 29 8 4.6066 -1.7163 -3.1473 30 6 3.9503 -0.2332 -1.3028 31 1 -0.4851 0.8400 -0.0004 32 1 3.8923 -3.2680 -0.5331 33 1 4.4562 -2.3758 0.9057 34 1 5.9810 -3.4165 -2.3884 35 1 7.5626 -7.5951 -0.2982 36 1 9.0683 -8.6223 1.3573 37 1 10.9665 -7.3388 2.2584 38 1 11.3709 -5.0349 1.4892 39 1 9.8650 -4.0075 -0.1660 40 1 8.9829 -3.7436 -2.5536 41 1 7.0542 -5.7828 -3.9524 42 1 8.1079 -4.5296 -4.8010 43 1 10.1823 -5.5968 -3.8032 44 1 9.1296 -6.8505 -2.9542 45 1 4.2953 -1.1560 -3.8714 46 1 3.2410 0.1600 -2.0310 47 1 4.3528 0.5747 -0.6917 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083641417.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:20 Heat of formation + Delta-G solvation = 0.907334 kcal Electronic energy + Delta-G solvation = -28623.311439 eV Core-core repulsion = 24772.779013 eV Total energy + Delta-G solvation = -3850.532427 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.55008 -39.10240 -38.03466 -37.25597 -35.03096 -34.03572 -32.44195 -31.86769 -30.94680 -29.26893 -28.13097 -27.19792 -24.27120 -22.85405 -22.70985 -22.00341 -21.57516 -21.17167 -20.03133 -19.75980 -17.72706 -17.12748 -17.08841 -16.70336 -15.68587 -15.59780 -15.47497 -15.35284 -14.96449 -14.58411 -14.05807 -13.93522 -13.76808 -13.44151 -13.41443 -13.08698 -12.96644 -12.77402 -12.60668 -12.40422 -11.87690 -11.73775 -11.45685 -11.37010 -11.31390 -11.15051 -11.00255 -10.98509 -10.79407 -10.52808 -10.35437 -10.26468 -9.69030 -9.57470 -9.45601 -8.94287 -8.84809 -8.77275 -8.62674 -7.05536 -5.95576 -3.25518 1.27195 1.38397 2.72226 3.22380 3.27840 3.45444 3.46504 3.47464 3.78356 4.29607 4.38556 4.50519 4.52046 4.62187 4.77198 4.85250 4.88298 4.92488 4.99516 5.00750 5.05381 5.17706 5.23513 5.30008 5.41135 5.42572 5.45138 5.48140 5.57392 5.63874 5.75863 5.84744 5.87335 5.93095 5.94482 5.99413 6.31234 6.38412 6.39368 6.43986 6.45809 6.55621 6.67124 6.84912 6.93878 7.65252 7.73243 7.85100 8.29931 8.39225 8.81889 9.66787 10.13900 11.20686 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.017928 B = 0.003058 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.436977 B = 9154.465039 C = 9887.350241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.021 3.979 3 Si 0.882 3.118 4 H -0.287 1.287 5 H -0.301 1.301 6 H -0.276 1.276 7 C -0.237 4.237 8 H 0.093 0.907 9 N -0.600 5.600 10 C 0.131 3.869 11 C 0.142 3.858 12 H 0.103 0.897 13 N -0.705 5.705 14 C 0.518 3.482 15 O -0.533 6.533 16 C -0.037 4.037 17 H 0.103 0.897 18 C -0.057 4.057 19 C -0.113 4.113 20 C -0.124 4.124 21 C -0.122 4.122 22 C -0.124 4.124 23 C -0.078 4.078 24 C -0.146 4.146 25 C -0.174 4.174 26 C -0.168 4.168 27 C 0.084 3.916 28 H 0.067 0.933 29 O -0.554 6.554 30 C 0.084 3.916 31 H 0.263 0.737 32 H 0.039 0.961 33 H 0.037 0.963 34 H 0.409 0.591 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.109 0.891 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.380 0.620 46 H 0.067 0.933 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.967 -11.931 -7.870 26.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.178 4.178 3 Si 0.712 3.288 4 H -0.214 1.214 5 H -0.229 1.229 6 H -0.202 1.202 7 C -0.364 4.364 8 H 0.110 0.890 9 N -0.327 5.327 10 C 0.004 3.996 11 C 0.036 3.964 12 H 0.121 0.879 13 N -0.356 5.356 14 C 0.303 3.697 15 O -0.409 6.409 16 C -0.058 4.058 17 H 0.121 0.879 18 C -0.058 4.058 19 C -0.131 4.131 20 C -0.142 4.142 21 C -0.140 4.140 22 C -0.142 4.142 23 C -0.097 4.097 24 C -0.164 4.164 25 C -0.211 4.211 26 C -0.205 4.205 27 C 0.024 3.976 28 H 0.084 0.916 29 O -0.359 6.359 30 C -0.042 4.042 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.245 0.755 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.127 0.873 41 H 0.117 0.883 42 H 0.116 0.884 43 H 0.113 0.887 44 H 0.114 0.886 45 H 0.228 0.772 46 H 0.085 0.915 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 22.059 -12.107 -6.621 26.020 hybrid contribution 0.014 1.492 -0.588 1.603 sum 22.073 -10.616 -7.209 25.532 Atomic orbital electron populations 1.69839 1.05499 1.26545 1.53319 1.24991 0.95175 0.97287 1.00314 0.87002 0.79363 0.84886 0.77560 1.21428 1.22891 1.20184 1.18649 0.84154 0.95526 1.38087 0.88983 1.44563 1.09881 1.21928 1.56317 1.21670 0.87564 0.93053 0.97266 1.22117 0.95044 0.85127 0.94066 0.87884 1.45758 1.44382 1.27298 1.18209 1.20315 0.79098 0.84287 0.86004 1.90734 1.62052 1.70013 1.18072 1.19899 0.96615 0.95824 0.93499 0.87851 1.19197 0.95547 0.93966 0.97049 1.20993 0.99424 0.94721 0.97996 1.21038 0.95614 0.99889 0.97678 1.21108 0.98049 0.94880 0.99967 1.21099 0.99737 0.95438 0.97887 1.20866 0.93771 0.98971 0.96049 1.22058 1.03712 0.99718 0.90927 1.23119 0.98386 1.03722 0.95857 1.22928 0.96532 0.97727 1.03325 1.23250 0.95163 0.92853 0.86375 0.91555 1.86309 1.84469 1.37341 1.27808 1.22681 0.94240 0.92958 0.94324 0.92697 0.94332 0.94487 0.75458 0.86282 0.86246 0.86409 0.86309 0.86492 0.87325 0.88337 0.88372 0.88697 0.88567 0.77205 0.91531 0.94910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.14 13.97 55.49 0.78 -27.37 16 2 C 0.02 0.60 5.43 -17.43 -0.09 0.51 16 3 Si 0.88 22.40 24.27 -169.99 -4.13 18.27 16 4 H -0.29 -6.84 6.49 56.52 0.37 -6.48 16 5 H -0.30 -7.78 7.11 56.52 0.40 -7.37 16 6 H -0.28 -6.96 6.66 56.52 0.38 -6.59 16 7 C -0.24 -6.84 10.57 -15.06 -0.16 -7.00 16 8 H 0.09 2.84 8.06 -52.49 -0.42 2.42 16 9 N -0.60 -14.71 3.21 -169.94 -0.54 -15.26 16 10 C 0.13 2.79 7.00 -3.06 -0.02 2.76 16 11 C 0.14 2.42 3.15 -66.10 -0.21 2.21 16 12 H 0.10 1.80 7.62 -51.93 -0.40 1.40 16 13 N -0.70 -9.98 4.98 -52.03 -0.26 -10.23 16 14 C 0.52 7.47 7.00 -10.98 -0.08 7.39 16 15 O -0.53 -9.67 14.79 5.56 0.08 -9.59 16 16 C -0.04 -0.40 2.53 -92.92 -0.23 -0.64 16 17 H 0.10 1.01 7.63 -51.93 -0.40 0.61 16 18 C -0.06 -0.67 4.05 -104.63 -0.42 -1.09 16 19 C -0.11 -1.21 9.67 -39.59 -0.38 -1.60 16 20 C -0.12 -1.24 10.05 -39.59 -0.40 -1.63 16 21 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 22 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 23 C -0.08 -0.94 8.04 -39.58 -0.32 -1.26 16 24 C -0.15 -1.28 4.60 -90.62 -0.42 -1.69 16 25 C -0.17 -1.27 10.18 -26.70 -0.27 -1.54 16 26 C -0.17 -1.25 9.87 -26.70 -0.26 -1.51 16 27 C 0.08 1.34 4.31 -24.46 -0.11 1.23 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 O -0.55 -8.02 12.23 -35.23 -0.43 -8.45 16 30 C 0.08 1.76 4.43 -2.41 -0.01 1.75 16 31 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 32 H 0.04 0.84 8.03 -51.93 -0.42 0.43 16 33 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.41 5.16 7.48 -40.82 -0.31 4.86 16 35 H 0.12 1.07 7.95 -52.49 -0.42 0.65 16 36 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 39 H 0.12 1.40 7.99 -52.49 -0.42 0.98 16 40 H 0.11 1.00 8.11 -51.93 -0.42 0.58 16 41 H 0.10 0.69 8.05 -51.93 -0.42 0.27 16 42 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.38 4.09 9.12 45.56 0.42 4.51 16 46 H 0.07 1.45 6.64 -51.93 -0.34 1.11 16 47 H 0.03 0.72 5.57 -51.93 -0.29 0.43 16 LS Contribution 380.11 15.07 5.73 5.73 Total: -1.00 -34.59 380.11 -9.37 -43.96 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -6.41 Total: 8.39 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -4.18 Total: -5.45 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: -0.03 Total: -52.86 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.35 Total: -18.03 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.13 Total: 18.27 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.59 -9.37 -43.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083641417.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.863 kcal (2) G-P(sol) polarization free energy of solvation -34.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds