Wall clock time and date at job start Tue Mar 31 2020 05:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99837 * 2 1 4 4 H 1.48501 * 109.47231 * 265.44294 * 3 2 1 5 5 H 1.48496 * 109.47174 * 25.43977 * 3 2 1 6 6 H 1.48500 * 109.47072 * 145.44309 * 3 2 1 7 7 C 1.38809 * 120.00173 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99939 * 347.24283 * 7 2 1 9 9 N 1.36938 * 119.99864 * 167.23293 * 7 2 1 10 10 C 1.47029 * 125.64573 * 144.79054 * 9 7 2 11 11 C 1.54319 * 107.27210 * 178.90513 * 10 9 7 12 12 H 1.09004 * 110.71624 * 96.16929 * 11 10 9 13 13 N 1.46500 * 110.72156 * 219.26816 * 11 10 9 14 14 C 1.34777 * 119.99582 * 271.15869 * 13 11 10 15 15 O 1.21281 * 120.00439 * 354.75297 * 14 13 11 16 16 C 1.50705 * 119.99521 * 174.75110 * 14 13 11 17 17 H 1.08993 * 109.47434 * 333.85285 * 16 14 13 18 18 C 1.50704 * 109.46943 * 93.85821 * 16 14 13 19 19 C 1.38231 * 120.00082 * 59.72036 * 18 16 14 20 20 C 1.38236 * 119.99523 * 179.78442 * 19 18 16 21 21 C 1.38235 * 120.00111 * 0.47243 * 20 19 18 22 22 C 1.38236 * 120.00109 * 359.76268 * 21 20 19 23 23 C 1.38232 * 120.00026 * 0.02562 * 22 21 20 24 24 C 1.53006 * 109.46908 * 213.85188 * 16 14 13 25 25 C 1.52999 * 117.49458 * 133.84211 * 24 16 14 26 26 C 1.53004 * 117.49708 * 65.18220 * 24 16 14 27 27 C 1.55156 * 103.10359 * 337.72187 * 11 10 9 28 28 H 1.08997 * 111.00660 * 153.66796 * 27 11 10 29 29 O 1.42908 * 111.00198 * 277.51556 * 27 11 10 30 30 C 1.47417 * 125.65232 * 324.75278 * 9 7 2 31 31 H 0.97003 * 119.99829 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.88102 * 59.48424 * 10 9 7 33 33 H 1.09003 * 110.01063 * 298.40095 * 10 9 7 34 34 H 0.96997 * 119.99915 * 91.15943 * 13 11 10 35 35 H 1.07990 * 120.00327 * 0.02562 * 19 18 16 36 36 H 1.08003 * 119.99759 * 180.25228 * 20 19 18 37 37 H 1.08002 * 120.00264 * 179.78671 * 21 20 19 38 38 H 1.07994 * 120.00194 * 180.02562 * 22 21 20 39 39 H 1.07995 * 120.00654 * 179.97438 * 23 22 21 40 40 H 1.08992 * 115.55054 * 279.51289 * 24 16 14 41 41 H 1.08994 * 117.50087 * 359.97438 * 25 24 16 42 42 H 1.08999 * 117.49842 * 145.02524 * 25 24 16 43 43 H 1.08996 * 117.49855 * 214.98002 * 26 24 16 44 44 H 1.08999 * 117.49603 * 359.97438 * 26 24 16 45 45 H 0.96698 * 113.99647 * 180.02562 * 29 27 11 46 46 H 1.09006 * 110.36573 * 322.99671 * 30 9 7 47 47 H 1.09000 * 110.37001 * 85.21202 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.5940 1.9909 -1.3956 5 1 1.4027 2.6786 0.6014 6 1 3.4962 1.4700 0.7942 7 6 2.0103 -1.2021 -0.0005 8 1 1.4903 -2.1260 0.2056 9 7 3.3543 -1.2166 -0.2626 10 6 4.3376 -2.1200 0.3527 11 6 5.7125 -1.7902 -0.2654 12 1 6.2688 -1.1054 0.3748 13 7 6.4812 -3.0145 -0.5031 14 6 7.2778 -3.5086 0.4653 15 8 7.4327 -2.8906 1.4973 16 6 7.9761 -4.8291 0.2656 17 1 7.4071 -5.4386 -0.4363 18 6 9.3585 -4.5883 -0.2840 19 6 10.2652 -3.8307 0.4335 20 6 11.5347 -3.6136 -0.0687 21 6 11.8942 -4.1458 -1.2928 22 6 10.9858 -4.8994 -2.0125 23 6 9.7178 -5.1202 -1.5083 24 6 8.0804 -5.5587 1.6065 25 6 7.7051 -7.0416 1.6348 26 6 6.7765 -6.0044 2.2715 27 6 5.3400 -1.1066 -1.6075 28 1 6.1275 -0.4261 -1.9312 29 8 5.0591 -2.0786 -2.6167 30 6 4.0548 -0.3295 -1.2090 31 1 -0.4850 0.8401 0.0004 32 1 4.0739 -3.1558 0.1390 33 1 4.3676 -1.9603 1.4305 34 1 6.4168 -3.4694 -1.3573 35 1 9.9832 -3.4117 1.3880 36 1 12.2445 -3.0251 0.4937 37 1 12.8849 -3.9733 -1.6868 38 1 11.2668 -5.3155 -2.9686 39 1 9.0079 -5.7085 -2.0707 40 1 8.8913 -5.2322 2.2575 41 1 7.3834 -7.4974 0.6984 42 1 8.2688 -7.6908 2.3048 43 1 6.7298 -5.9716 3.3599 44 1 5.8445 -5.7776 1.7539 45 1 4.8217 -1.6985 -3.4736 46 1 3.4351 -0.1464 -2.0869 47 1 4.3139 0.6123 -0.7253 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083641418.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:23 Heat of formation + Delta-G solvation = -3.956056 kcal Electronic energy + Delta-G solvation = -28682.350293 eV Core-core repulsion = 24831.606974 eV Total energy + Delta-G solvation = -3850.743319 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.53526 -39.12395 -38.16058 -36.95848 -35.01091 -34.02411 -32.72542 -31.86937 -31.08501 -29.16357 -28.03344 -27.22590 -24.30132 -22.95556 -22.54131 -22.01335 -21.68569 -21.10497 -19.90925 -19.66418 -17.62839 -17.25995 -16.99667 -16.81438 -15.86235 -15.73353 -15.46562 -15.08721 -14.90565 -14.46674 -14.41896 -13.83617 -13.81613 -13.52911 -13.32856 -13.04166 -12.93959 -12.75173 -12.60036 -12.50734 -11.80138 -11.61177 -11.43144 -11.37444 -11.33441 -11.16680 -11.08239 -10.91319 -10.62887 -10.51891 -10.39896 -10.29839 -9.68176 -9.61446 -9.52642 -9.10430 -8.89968 -8.78270 -8.61051 -6.84403 -5.99637 -3.45227 1.10491 1.21753 2.74192 3.16199 3.28258 3.42761 3.46689 3.60033 3.78423 4.30355 4.40568 4.49141 4.56481 4.70712 4.78114 4.81807 4.90174 4.94895 5.00593 5.01171 5.08528 5.13206 5.29886 5.30329 5.33681 5.37691 5.49434 5.51772 5.54191 5.76002 5.81317 5.85546 5.87042 5.97431 6.01443 6.10239 6.25543 6.32654 6.33455 6.40841 6.41343 6.45803 6.69487 6.79478 6.86258 7.72963 7.79254 7.90313 8.31171 8.39905 8.81339 9.63166 10.17925 11.16553 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.016503 B = 0.003243 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.242603 B = 8632.278467 C = 9419.004513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.030 3.970 3 Si 0.891 3.109 4 H -0.286 1.286 5 H -0.300 1.300 6 H -0.271 1.271 7 C -0.243 4.243 8 H 0.085 0.915 9 N -0.599 5.599 10 C 0.129 3.871 11 C 0.141 3.859 12 H 0.103 0.897 13 N -0.708 5.708 14 C 0.523 3.477 15 O -0.534 6.534 16 C -0.035 4.035 17 H 0.096 0.904 18 C -0.070 4.070 19 C -0.103 4.103 20 C -0.120 4.120 21 C -0.122 4.122 22 C -0.121 4.121 23 C -0.110 4.110 24 C -0.129 4.129 25 C -0.177 4.177 26 C -0.170 4.170 27 C 0.083 3.917 28 H 0.066 0.934 29 O -0.554 6.554 30 C 0.085 3.915 31 H 0.265 0.735 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.407 0.593 35 H 0.129 0.871 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.111 0.889 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.095 0.905 45 H 0.380 0.620 46 H 0.062 0.938 47 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.998 -10.994 -4.457 25.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.169 4.169 3 Si 0.721 3.279 4 H -0.212 1.212 5 H -0.227 1.227 6 H -0.197 1.197 7 C -0.371 4.371 8 H 0.103 0.897 9 N -0.327 5.327 10 C 0.003 3.997 11 C 0.035 3.965 12 H 0.121 0.879 13 N -0.359 5.359 14 C 0.309 3.691 15 O -0.411 6.411 16 C -0.056 4.056 17 H 0.114 0.886 18 C -0.071 4.071 19 C -0.121 4.121 20 C -0.138 4.138 21 C -0.140 4.140 22 C -0.139 4.139 23 C -0.128 4.128 24 C -0.148 4.148 25 C -0.214 4.214 26 C -0.207 4.207 27 C 0.022 3.978 28 H 0.083 0.917 29 O -0.360 6.360 30 C -0.040 4.040 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.243 0.757 35 H 0.147 0.853 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.129 0.871 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.227 0.773 46 H 0.081 0.919 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 22.956 -10.867 -3.183 25.597 hybrid contribution 0.135 1.274 -0.887 1.559 sum 23.091 -9.593 -4.070 25.333 Atomic orbital electron populations 1.69761 1.05694 1.26753 1.53005 1.25437 0.95274 0.97818 0.98413 0.86773 0.79346 0.83982 0.77783 1.21243 1.22737 1.19667 1.18566 0.79953 0.94017 1.44538 0.89733 1.44437 1.03804 1.40404 1.44026 1.21734 0.86846 0.95142 0.95965 1.22130 0.92900 0.86247 0.95193 0.87888 1.45817 1.44983 1.27728 1.17375 1.20301 0.78688 0.86545 0.83593 1.90683 1.62844 1.60072 1.27454 1.19848 0.93643 0.94647 0.97489 0.88581 1.19384 0.94091 0.98645 0.94933 1.21178 0.93189 0.97438 1.00328 1.21157 0.96413 1.00008 0.96223 1.21171 0.99552 0.98096 0.95161 1.21101 0.93724 0.99189 0.99906 1.21060 0.96773 0.99890 0.95092 1.21930 1.00536 0.95905 0.96386 1.23060 1.03850 0.91420 1.03024 1.22963 0.94368 1.02778 1.00628 1.23300 0.96455 0.90120 0.87903 0.91672 1.86307 1.91582 1.35324 1.22797 1.22760 0.92618 0.93895 0.94758 0.92549 0.94500 0.94485 0.75717 0.85307 0.86056 0.86214 0.86015 0.85876 0.87084 0.88731 0.88675 0.88456 0.88602 0.77268 0.91937 0.94987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.08 13.97 55.49 0.78 -27.30 16 2 C 0.03 0.89 5.48 -17.43 -0.10 0.80 16 3 Si 0.89 22.58 24.53 -169.99 -4.17 18.41 16 4 H -0.29 -6.87 7.10 56.52 0.40 -6.47 16 5 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 6 H -0.27 -6.80 6.64 56.52 0.38 -6.42 16 7 C -0.24 -6.99 10.55 -15.06 -0.16 -7.15 16 8 H 0.09 2.63 8.06 -52.49 -0.42 2.20 16 9 N -0.60 -14.67 2.99 -169.77 -0.51 -15.17 16 10 C 0.13 2.76 6.99 -3.06 -0.02 2.74 16 11 C 0.14 2.46 3.19 -66.10 -0.21 2.25 16 12 H 0.10 1.87 7.55 -51.93 -0.39 1.48 16 13 N -0.71 -10.38 5.08 -52.03 -0.26 -10.65 16 14 C 0.52 7.68 6.25 -10.98 -0.07 7.61 16 15 O -0.53 -9.59 15.61 5.56 0.09 -9.51 16 16 C -0.03 -0.39 2.47 -92.92 -0.23 -0.62 16 17 H 0.10 0.93 7.68 -51.93 -0.40 0.53 16 18 C -0.07 -0.75 4.77 -104.62 -0.50 -1.25 16 19 C -0.10 -1.16 8.66 -39.58 -0.34 -1.50 16 20 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 21 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 22 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 23 C -0.11 -1.02 9.67 -39.58 -0.38 -1.40 16 24 C -0.13 -1.43 4.45 -90.62 -0.40 -1.83 16 25 C -0.18 -1.62 10.18 -26.69 -0.27 -1.89 16 26 C -0.17 -1.92 10.01 -26.69 -0.27 -2.18 16 27 C 0.08 1.34 4.32 -24.32 -0.10 1.24 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 O -0.55 -8.11 12.24 -35.23 -0.43 -8.55 16 30 C 0.09 1.79 4.67 -2.27 -0.01 1.77 16 31 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 32 H 0.04 0.80 8.03 -51.93 -0.42 0.38 16 33 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.41 5.33 7.59 -40.82 -0.31 5.02 16 35 H 0.13 1.56 7.36 -52.49 -0.39 1.18 16 36 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 37 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 38 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 39 H 0.12 0.91 7.95 -52.49 -0.42 0.49 16 40 H 0.11 1.27 7.44 -51.93 -0.39 0.88 16 41 H 0.09 0.78 8.08 -51.93 -0.42 0.36 16 42 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 45 H 0.38 4.09 9.12 45.56 0.42 4.50 16 46 H 0.06 1.33 7.89 -51.93 -0.41 0.92 16 47 H 0.03 0.70 5.10 -51.93 -0.26 0.44 16 LS Contribution 382.11 15.07 5.76 5.76 Total: -1.00 -34.05 382.11 -9.37 -43.42 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -6.35 Total: 9.44 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -4.26 Total: -5.85 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: 0.00 Total: -53.13 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.34 Total: -18.05 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.17 Total: 18.41 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.05 -9.37 -43.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083641418.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.465 kcal (2) G-P(sol) polarization free energy of solvation -34.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds