Wall clock time and date at job start Tue Mar 31 2020 05:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99484 * 2 1 4 4 H 1.48499 * 109.47088 * 269.99718 * 3 2 1 5 5 H 1.48496 * 109.47096 * 30.00285 * 3 2 1 6 6 H 1.48502 * 109.46666 * 150.00354 * 3 2 1 7 7 C 1.38808 * 120.00364 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00153 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00119 * 359.97438 * 7 2 1 10 10 C 1.47463 * 125.63070 * 179.97438 * 9 7 2 11 11 C 1.54906 * 104.81241 * 204.07166 * 10 9 7 12 12 H 1.09003 * 111.00642 * 81.14036 * 11 10 9 13 13 N 1.46502 * 111.00738 * 204.95167 * 11 10 9 14 14 C 1.34779 * 119.99844 * 270.42045 * 13 11 10 15 15 O 1.21277 * 120.00072 * 0.02562 * 14 13 11 16 16 C 1.50698 * 119.99829 * 179.97438 * 14 13 11 17 17 C 1.50694 * 109.47197 * 180.02562 * 16 14 13 18 18 C 1.38257 * 120.00155 * 89.99832 * 17 16 14 19 19 C 1.38216 * 120.00107 * 179.97438 * 18 17 16 20 20 C 1.38255 * 120.00139 * 0.02562 * 19 18 17 21 21 C 1.38220 * 119.99696 * 0.02562 * 20 19 18 22 22 C 1.50706 * 119.99654 * 179.97438 * 21 20 19 23 23 C 1.52997 * 117.50075 * 8.74682 * 22 21 20 24 24 C 1.52995 * 117.50119 * 300.08428 * 22 21 20 25 25 C 1.38219 * 119.99902 * 270.27900 * 17 16 14 26 26 C 1.55163 * 101.61633 * 323.04633 * 11 10 9 27 27 H 1.09006 * 110.71771 * 153.84679 * 26 11 10 28 28 O 1.42899 * 110.71701 * 276.93735 * 26 11 10 29 29 C 1.47032 * 125.64674 * 359.97438 * 9 7 2 30 30 H 0.96998 * 120.00490 * 0.02562 * 1 2 3 31 31 H 1.09002 * 110.34842 * 85.25614 * 10 9 7 32 32 H 1.09000 * 110.40747 * 322.92354 * 10 9 7 33 33 H 0.96997 * 119.99804 * 90.41699 * 13 11 10 34 34 H 1.09001 * 109.47054 * 59.99544 * 16 14 13 35 35 H 1.09002 * 109.47167 * 299.99990 * 16 14 13 36 36 H 1.08001 * 120.00211 * 0.02562 * 18 17 16 37 37 H 1.08000 * 120.00535 * 179.97438 * 19 18 17 38 38 H 1.08004 * 120.00617 * 179.97438 * 20 19 18 39 39 H 1.09006 * 115.54498 * 154.41425 * 22 21 20 40 40 H 1.09005 * 117.49810 * 359.97438 * 23 22 21 41 41 H 1.08998 * 117.49639 * 145.01677 * 23 22 21 42 42 H 1.08999 * 117.50112 * 214.97947 * 24 22 21 43 43 H 1.08998 * 117.49763 * 359.97438 * 24 22 21 44 44 H 1.07998 * 119.99789 * 0.02562 * 25 17 16 45 45 H 0.96704 * 113.99679 * 179.97438 * 28 26 11 46 46 H 1.08998 * 109.88015 * 59.55310 * 29 9 7 47 47 H 1.09001 * 110.00470 * 298.46722 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 1.9343 -3.7312 -0.0016 11 6 0.8518 -4.6560 -0.6120 12 1 0.8557 -4.5967 -1.7004 13 7 1.0293 -6.0394 -0.1638 14 6 1.8113 -6.8810 -0.8685 15 8 2.3685 -6.4929 -1.8734 16 6 1.9944 -8.3039 -0.4071 17 6 2.9082 -9.0279 -1.3619 18 6 4.2740 -9.0265 -1.1469 19 6 5.1121 -9.6911 -2.0223 20 6 4.5847 -10.3568 -3.1133 21 6 3.2194 -10.3573 -3.3288 22 6 2.6447 -11.0824 -4.5184 23 6 3.5920 -11.9660 -5.3325 24 6 3.1027 -10.6346 -5.9077 25 6 2.3815 -9.6886 -2.4558 26 6 -0.4483 -4.0441 -0.0264 27 1 -1.2988 -4.2515 -0.6759 28 8 -0.6898 -4.5378 1.2927 29 6 -0.1375 -2.5328 0.0005 30 1 -0.4851 0.8400 -0.0004 31 1 2.1685 -4.0421 1.0166 32 1 2.8331 -3.7408 -0.6182 33 1 0.5840 -6.3496 0.6402 34 1 1.0265 -8.8044 -0.3799 35 1 2.4341 -8.3087 0.5902 36 1 4.6859 -8.5069 -0.2945 37 1 6.1790 -9.6897 -1.8547 38 1 5.2396 -10.8757 -3.7977 39 1 1.6123 -11.4158 -4.4119 40 1 4.6311 -12.0225 -5.0079 41 1 3.1827 -12.8804 -5.7619 42 1 2.3719 -10.6736 -6.7155 43 1 3.8194 -9.8151 -5.9615 44 1 1.3151 -9.6855 -2.6264 45 1 -1.4909 -4.1854 1.7040 46 1 -0.5582 -2.0521 -0.8826 47 1 -0.5559 -2.0841 0.9015 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083665562.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:17 Heat of formation + Delta-G solvation = -7.503545 kcal Electronic energy + Delta-G solvation = -27562.176223 eV Core-core repulsion = 23711.279074 eV Total energy + Delta-G solvation = -3850.897150 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.18447 -39.32320 -37.91679 -36.88551 -34.84193 -33.88675 -32.73299 -31.59665 -30.87709 -28.75673 -27.79071 -26.58698 -24.42318 -23.89878 -22.82030 -22.18862 -20.98073 -20.43407 -19.92023 -19.51275 -17.49034 -17.12137 -16.74422 -16.64188 -16.09662 -15.45782 -15.26862 -14.85175 -14.72333 -14.30534 -14.12539 -13.93316 -13.86963 -13.29850 -13.08642 -12.78910 -12.66430 -12.61910 -12.38382 -12.28393 -11.91081 -11.83528 -11.30579 -11.27287 -11.08016 -10.94788 -10.83677 -10.82602 -10.58889 -10.51182 -10.44228 -10.11968 -9.81485 -9.66629 -9.31956 -8.80824 -8.68951 -8.61367 -8.56082 -6.87034 -5.74650 -3.07490 1.24059 1.33570 2.87165 3.28949 3.40392 3.45276 3.47029 3.55574 3.93240 4.30456 4.49297 4.56199 4.57640 4.66150 4.73954 4.82077 4.89294 5.00541 5.13131 5.19714 5.29478 5.30533 5.37610 5.38904 5.42744 5.52937 5.55287 5.62013 5.73068 5.78979 5.83314 5.88199 5.95217 6.00094 6.10139 6.23267 6.40122 6.49647 6.54562 6.63695 6.68354 6.93433 6.96250 7.33259 7.44704 7.72787 7.85878 8.06805 8.20171 8.52406 9.18311 9.78423 10.42976 11.37696 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.018100 B = 0.002326 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.621738 B =12036.572043 C =12498.489873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.010 4.010 3 Si 0.915 3.085 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.223 4.223 8 H 0.079 0.921 9 N -0.601 5.601 10 C 0.132 3.868 11 C 0.140 3.860 12 H 0.102 0.898 13 N -0.710 5.710 14 C 0.509 3.491 15 O -0.534 6.534 16 C -0.103 4.103 17 C -0.057 4.057 18 C -0.108 4.108 19 C -0.115 4.115 20 C -0.124 4.124 21 C -0.053 4.053 22 C -0.116 4.116 23 C -0.179 4.179 24 C -0.169 4.169 25 C -0.098 4.098 26 C 0.068 3.932 27 H 0.060 0.940 28 O -0.567 6.567 29 C 0.155 3.845 30 H 0.252 0.748 31 H 0.025 0.975 32 H 0.043 0.957 33 H 0.406 0.594 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.111 0.889 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.119 0.881 45 H 0.379 0.621 46 H 0.055 0.945 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.719 -24.310 -3.539 24.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.206 4.206 3 Si 0.745 3.255 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.351 4.351 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.004 3.996 11 C 0.034 3.966 12 H 0.120 0.880 13 N -0.362 5.362 14 C 0.295 3.705 15 O -0.410 6.410 16 C -0.143 4.143 17 C -0.057 4.057 18 C -0.126 4.126 19 C -0.133 4.133 20 C -0.142 4.142 21 C -0.053 4.053 22 C -0.134 4.134 23 C -0.215 4.215 24 C -0.206 4.206 25 C -0.116 4.116 26 C 0.008 3.992 27 H 0.078 0.922 28 O -0.374 6.374 29 C 0.029 3.971 30 H 0.063 0.937 31 H 0.043 0.957 32 H 0.062 0.938 33 H 0.241 0.759 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.129 0.871 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.137 0.863 45 H 0.227 0.773 46 H 0.073 0.927 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.623 -24.105 -4.384 24.640 hybrid contribution -0.367 1.239 0.519 1.392 sum 2.256 -22.866 -3.865 23.299 Atomic orbital electron populations 1.69910 1.04906 1.25109 1.57605 1.24792 0.95790 0.97718 1.02290 0.86067 0.78573 0.83230 0.77616 1.21539 1.21673 1.20664 1.19095 0.90552 0.82188 1.43306 0.90291 1.44295 1.01258 0.99932 1.87300 1.21836 0.94635 0.85750 0.97340 1.22315 0.95243 0.79759 0.99292 0.88012 1.45789 1.49551 1.11378 1.29461 1.20475 0.78999 0.87105 0.83960 1.90738 1.47069 1.77804 1.25418 1.20683 1.00949 0.92936 0.99731 1.19252 0.93764 0.97052 0.95656 1.20992 0.92790 0.98898 0.99906 1.21042 0.99569 0.97808 0.94908 1.20971 0.94556 1.00533 0.98136 1.19031 0.93282 0.97977 0.95046 1.21020 0.99190 1.02785 0.90435 1.23072 0.99847 0.94706 1.03907 1.23042 1.03787 0.98269 0.95516 1.20726 0.99515 0.97476 0.93895 1.23504 0.95617 0.96907 0.83195 0.92208 1.86243 1.49262 1.71396 1.30464 1.21847 0.85551 0.87758 1.01936 0.93735 0.95699 0.93822 0.75853 0.88109 0.87940 0.86149 0.86100 0.86274 0.87061 0.88400 0.88548 0.88469 0.88449 0.86296 0.77313 0.92689 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.99 10.31 55.49 0.57 -26.42 16 2 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 3 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 7 C -0.22 -6.35 10.28 -15.06 -0.15 -6.51 16 8 H 0.08 2.20 7.83 -52.48 -0.41 1.78 16 9 N -0.60 -15.66 3.40 -170.04 -0.58 -16.23 16 10 C 0.13 2.94 6.93 -2.51 -0.02 2.92 16 11 C 0.14 2.61 3.25 -65.78 -0.21 2.40 16 12 H 0.10 2.06 7.63 -51.93 -0.40 1.66 16 13 N -0.71 -10.70 5.18 -51.73 -0.27 -10.97 16 14 C 0.51 7.72 7.82 -10.99 -0.09 7.63 16 15 O -0.53 -10.44 15.73 5.56 0.09 -10.35 16 16 C -0.10 -1.11 5.83 -29.04 -0.17 -1.27 16 17 C -0.06 -0.69 4.37 -104.62 -0.46 -1.14 16 18 C -0.11 -1.28 9.70 -39.58 -0.38 -1.66 16 19 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 20 C -0.12 -1.32 9.30 -39.58 -0.37 -1.69 16 21 C -0.05 -0.59 5.61 -104.62 -0.59 -1.18 16 22 C -0.12 -1.05 6.04 -91.77 -0.55 -1.61 16 23 C -0.18 -1.32 9.86 -26.70 -0.26 -1.58 16 24 C -0.17 -1.42 10.17 -26.70 -0.27 -1.70 16 25 C -0.10 -1.15 9.40 -39.58 -0.37 -1.53 16 26 C 0.07 1.21 4.19 -24.90 -0.10 1.11 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 28 O -0.57 -8.88 12.14 -35.23 -0.43 -9.30 16 29 C 0.15 3.64 5.14 -3.06 -0.02 3.63 16 30 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.41 5.27 7.56 -40.82 -0.31 4.96 16 34 H 0.10 0.83 8.09 -51.93 -0.42 0.41 16 35 H 0.10 0.89 8.08 -51.93 -0.42 0.47 16 36 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.12 1.03 6.02 -52.48 -0.32 0.71 16 39 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.10 0.68 6.18 -51.93 -0.32 0.36 16 41 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 45 H 0.38 4.58 9.12 45.56 0.42 4.99 16 46 H 0.06 1.43 7.38 -51.93 -0.38 1.04 16 47 H 0.05 1.35 7.44 -51.93 -0.39 0.96 16 LS Contribution 385.86 15.07 5.81 5.81 Total: -1.00 -34.23 385.86 -10.64 -44.87 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -6.31 Total: 9.46 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -4.51 Total: -4.21 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: -0.27 Total: -53.62 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.34 Total: -19.66 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.23 -10.64 -44.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083665562.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.368 kcal (2) G-P(sol) polarization free energy of solvation -34.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds