Wall clock time and date at job start Tue Mar 31 2020 05:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86793 * 120.00296 * 2 1 4 4 H 1.48503 * 109.47032 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47408 * 119.99867 * 3 2 1 6 6 H 1.48500 * 109.47188 * 240.00175 * 3 2 1 7 7 C 1.38818 * 119.99783 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00056 * 207.60587 * 7 2 1 9 9 N 1.36942 * 119.99948 * 27.60639 * 7 2 1 10 10 C 1.47018 * 125.64530 * 199.85539 * 9 7 2 11 11 C 1.54332 * 107.26968 * 181.02650 * 10 9 7 12 12 H 1.08993 * 110.72182 * 140.55467 * 11 10 9 13 13 N 1.46502 * 110.71710 * 263.65371 * 11 10 9 14 14 C 1.34772 * 119.99812 * 273.54094 * 13 11 10 15 15 O 1.21286 * 120.00105 * 0.02562 * 14 13 11 16 16 C 1.50705 * 119.99937 * 180.02562 * 14 13 11 17 17 C 1.52995 * 109.47008 * 173.70211 * 16 14 13 18 18 H 1.09005 * 110.27186 * 56.35475 * 17 16 14 19 19 C 1.54345 * 110.30606 * 294.27782 * 17 16 14 20 20 C 1.54343 * 102.39044 * 214.72587 * 19 17 16 21 21 C 1.51373 * 105.17109 * 26.34577 * 20 19 17 22 22 C 1.38501 * 130.39123 * 162.79016 * 21 20 19 23 23 C 1.38106 * 120.21084 * 180.02562 * 22 21 20 24 24 C 1.38255 * 119.94052 * 359.96413 * 23 22 21 25 25 C 1.38112 * 119.92841 * 0.02562 * 24 23 22 26 26 C 1.38215 * 109.75829 * 342.81560 * 21 20 19 27 27 C 1.55157 * 102.94086 * 22.19059 * 11 10 9 28 28 H 1.09006 * 111.00310 * 82.57633 * 27 11 10 29 29 O 1.42901 * 111.00567 * 206.38810 * 27 11 10 30 30 C 1.47428 * 125.64645 * 19.55177 * 9 7 2 31 31 H 0.97001 * 119.99853 * 186.39877 * 1 2 3 32 32 H 1.08997 * 109.88459 * 300.43688 * 10 9 7 33 33 H 1.08993 * 109.88243 * 61.60892 * 10 9 7 34 34 H 0.96997 * 119.99942 * 93.54800 * 13 11 10 35 35 H 1.08997 * 109.46766 * 293.70431 * 16 14 13 36 36 H 1.08995 * 109.46780 * 53.70208 * 16 14 13 37 37 H 1.08997 * 110.82243 * 332.94917 * 19 17 16 38 38 H 1.09002 * 110.82286 * 96.50214 * 19 17 16 39 39 H 1.08999 * 110.30251 * 145.26960 * 20 19 17 40 40 H 1.08995 * 110.30479 * 267.32376 * 20 19 17 41 41 H 1.07995 * 119.89939 * 0.03167 * 22 21 20 42 42 H 1.08006 * 120.02915 * 179.97438 * 23 22 21 43 43 H 1.07996 * 120.03268 * 179.97438 * 24 23 22 44 44 H 1.07992 * 119.88831 * 180.02562 * 25 24 23 45 45 H 0.96701 * 113.99946 * 180.02562 * 29 27 11 46 46 H 1.08994 * 110.36370 * 274.74005 * 30 9 7 47 47 H 1.09000 * 110.36556 * 37.06874 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1040 1.6963 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 2.9979 -1.2553 0.4339 9 7 1.4424 -2.3209 -0.5485 10 6 1.8420 -3.7084 -0.2718 11 6 0.9448 -4.6237 -1.1314 12 1 1.5192 -5.4569 -1.5362 13 7 -0.1950 -5.1127 -0.3515 14 6 -0.0708 -6.2262 0.3976 15 8 0.9846 -6.8231 0.4265 16 6 -1.2433 -6.7295 1.1994 17 6 -0.8899 -8.0791 1.8275 18 1 0.0110 -7.9889 2.4344 19 6 -0.6914 -9.1454 0.7293 20 6 -1.2369 -10.4216 1.4044 21 6 -2.2422 -9.9314 2.4245 22 6 -3.2518 -10.6095 3.0872 23 6 -4.0591 -9.9450 3.9895 24 6 -3.8593 -8.5989 4.2331 25 6 -2.8528 -7.9211 3.5733 26 6 -2.0428 -8.5855 2.6675 27 6 0.4723 -3.6791 -2.2680 28 1 1.2235 -3.6081 -3.0546 29 8 -0.7836 -4.1057 -2.7998 30 6 0.3250 -2.3335 -1.5102 31 1 -0.4850 -0.8348 0.0936 32 1 2.8877 -3.8541 -0.5428 33 1 1.6960 -3.9325 0.7848 34 1 -1.0389 -4.6352 -0.3744 35 1 -1.4797 -6.0133 1.9863 36 1 -2.1068 -6.8483 0.5449 37 1 -1.2720 -8.8989 -0.1596 38 1 0.3649 -9.2577 0.4848 39 1 -1.7257 -11.0596 0.6681 40 1 -0.4296 -10.9636 1.8970 41 1 -3.4082 -11.6612 2.8980 42 1 -4.8458 -10.4766 4.5043 43 1 -4.4900 -8.0777 4.9380 44 1 -2.6970 -6.8697 3.7645 45 1 -1.1191 -3.5460 -3.5134 46 1 -0.6287 -2.2942 -0.9840 47 1 0.4117 -1.4967 -2.2034 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083876249.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:37 Heat of formation + Delta-G solvation = -42.886782 kcal Electronic energy + Delta-G solvation = -28171.184140 eV Core-core repulsion = 24318.752658 eV Total energy + Delta-G solvation = -3852.431482 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.58330 -39.55692 -38.00653 -35.92720 -35.31622 -33.86145 -32.46921 -31.72862 -30.08194 -28.92178 -28.30045 -27.40234 -25.33496 -24.16441 -22.77599 -21.33635 -21.03472 -20.56883 -19.96048 -19.74246 -17.65537 -17.33990 -16.89886 -16.34915 -15.80755 -15.40043 -15.32903 -15.09637 -14.73966 -14.68719 -13.90238 -13.75890 -13.61729 -13.38513 -13.25088 -12.96723 -12.81453 -12.78888 -12.56517 -12.43974 -12.00542 -11.74447 -11.52152 -11.30147 -11.28052 -11.03401 -10.88579 -10.81472 -10.79062 -10.64491 -10.41999 -10.06883 -9.82811 -9.59400 -9.41344 -8.95924 -8.67859 -8.65216 -8.47833 -7.02665 -6.16764 -3.25380 1.20036 1.23216 2.90865 3.40017 3.46677 3.49412 3.62006 3.67532 4.24979 4.27283 4.42819 4.56029 4.77463 4.82862 4.84750 4.96002 5.01894 5.09894 5.13525 5.24611 5.30153 5.31534 5.36979 5.42490 5.44347 5.52600 5.58570 5.65098 5.75407 5.79282 5.90120 5.96538 5.96748 6.00448 6.10549 6.18183 6.33598 6.36497 6.38999 6.53301 6.57605 6.66174 6.81049 6.84514 6.95157 7.70700 7.82877 7.85030 8.40868 8.51843 8.92826 9.72312 10.25825 11.14262 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.017965 B = 0.002597 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.219225 B =10778.434694 C =11481.268745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.024 4.024 3 Si 1.065 2.935 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.293 1.293 7 C -0.337 4.337 8 H 0.066 0.934 9 N -0.597 5.597 10 C 0.125 3.875 11 C 0.146 3.854 12 H 0.092 0.908 13 N -0.701 5.701 14 C 0.514 3.486 15 O -0.548 6.548 16 C -0.132 4.132 17 C -0.032 4.032 18 H 0.096 0.904 19 C -0.110 4.110 20 C -0.084 4.084 21 C -0.095 4.095 22 C -0.111 4.111 23 C -0.123 4.123 24 C -0.122 4.122 25 C -0.105 4.105 26 C -0.088 4.088 27 C 0.073 3.927 28 H 0.075 0.925 29 O -0.562 6.562 30 C 0.119 3.881 31 H 0.267 0.733 32 H 0.037 0.963 33 H 0.034 0.966 34 H 0.404 0.596 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.117 0.883 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.121 0.879 45 H 0.379 0.621 46 H 0.035 0.965 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.893 -18.731 1.445 20.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.226 4.226 3 Si 0.894 3.106 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.465 4.465 8 H 0.083 0.917 9 N -0.326 5.326 10 C -0.001 4.001 11 C 0.041 3.959 12 H 0.110 0.890 13 N -0.352 5.352 14 C 0.301 3.699 15 O -0.426 6.426 16 C -0.172 4.172 17 C -0.050 4.050 18 H 0.114 0.886 19 C -0.147 4.147 20 C -0.121 4.121 21 C -0.095 4.095 22 C -0.129 4.129 23 C -0.141 4.141 24 C -0.140 4.140 25 C -0.123 4.123 26 C -0.089 4.089 27 C 0.013 3.987 28 H 0.093 0.907 29 O -0.367 6.367 30 C -0.008 4.008 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.239 0.761 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.136 0.864 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.226 0.774 46 H 0.053 0.947 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.173 -17.888 1.866 19.363 hybrid contribution -0.351 -0.828 -0.142 0.911 sum -7.524 -18.717 1.724 20.246 Atomic orbital electron populations 1.70803 1.06634 1.30101 1.47920 1.25813 0.96438 1.01195 0.99183 0.83523 0.74819 0.75939 0.76284 1.21057 1.21914 1.22040 1.19745 0.99245 0.87752 1.39711 0.91666 1.44391 1.39505 1.00530 1.48170 1.21806 0.95991 0.85305 0.97048 1.21945 0.87717 0.95818 0.90465 0.88964 1.45710 1.15509 1.27220 1.46733 1.20523 0.89698 0.80136 0.79572 1.90660 1.29496 1.57751 1.64698 1.21718 0.97454 0.97840 1.00220 1.20438 0.95908 0.93314 0.95357 0.88575 1.22353 1.02467 0.92854 0.97032 1.21103 0.96536 0.98385 0.96070 1.20644 0.96295 0.94568 0.97953 1.20613 0.95427 0.99658 0.97185 1.21023 0.99680 0.94817 0.98579 1.21045 0.98235 0.94667 1.00046 1.20699 0.95307 1.00048 0.96276 1.20616 0.96594 0.94611 0.97034 1.23487 0.85496 0.95347 0.94383 0.90698 1.86383 1.37611 1.56321 1.56365 1.22195 0.92598 0.94013 0.91957 0.92147 0.94499 0.94828 0.76082 0.88732 0.88962 0.91255 0.89491 0.90871 0.90228 0.86447 0.86095 0.85956 0.86103 0.77418 0.94739 0.92905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.90 12.99 55.49 0.72 -26.18 16 2 C -0.02 -0.68 5.11 -17.43 -0.09 -0.77 16 3 Si 1.07 24.95 30.00 -169.99 -5.10 19.85 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.34 -9.41 10.01 -15.05 -0.15 -9.56 16 8 H 0.07 1.84 7.97 -52.49 -0.42 1.42 16 9 N -0.60 -14.82 3.26 -169.93 -0.55 -15.38 16 10 C 0.12 2.70 6.98 -3.06 -0.02 2.68 16 11 C 0.15 2.63 3.13 -66.09 -0.21 2.42 16 12 H 0.09 1.64 7.69 -51.93 -0.40 1.24 16 13 N -0.70 -11.46 4.78 -52.03 -0.25 -11.71 16 14 C 0.51 8.09 7.53 -10.99 -0.08 8.00 16 15 O -0.55 -10.06 14.65 5.55 0.08 -9.98 16 16 C -0.13 -1.61 4.98 -27.88 -0.14 -1.75 16 17 C -0.03 -0.38 2.50 -90.74 -0.23 -0.61 16 18 H 0.10 1.28 7.94 -51.93 -0.41 0.87 16 19 C -0.11 -1.23 5.68 -25.32 -0.14 -1.38 16 20 C -0.08 -0.81 6.77 -26.85 -0.18 -0.99 16 21 C -0.09 -1.02 6.14 -104.20 -0.64 -1.66 16 22 C -0.11 -1.06 10.04 -39.53 -0.40 -1.46 16 23 C -0.12 -1.11 10.05 -39.62 -0.40 -1.51 16 24 C -0.12 -1.16 10.05 -39.62 -0.40 -1.56 16 25 C -0.11 -1.12 9.72 -39.53 -0.38 -1.51 16 26 C -0.09 -1.01 5.60 -104.21 -0.58 -1.59 16 27 C 0.07 1.25 4.23 -24.46 -0.10 1.15 16 28 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 29 O -0.56 -8.22 12.65 -35.23 -0.45 -8.66 16 30 C 0.12 2.58 5.08 -2.41 -0.01 2.57 16 31 H 0.27 7.86 6.15 -40.82 -0.25 7.61 16 32 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.03 0.78 8.04 -51.93 -0.42 0.37 16 34 H 0.40 6.32 8.21 -40.82 -0.34 5.98 16 35 H 0.09 1.08 7.77 -51.93 -0.40 0.68 16 36 H 0.09 1.00 8.07 -51.93 -0.42 0.59 16 37 H 0.07 0.77 7.86 -51.93 -0.41 0.37 16 38 H 0.09 1.07 7.65 -51.93 -0.40 0.67 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 42 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 43 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 44 H 0.12 1.17 7.77 -52.49 -0.41 0.76 16 45 H 0.38 4.05 9.12 45.56 0.42 4.47 16 46 H 0.03 0.81 6.79 -51.93 -0.35 0.45 16 47 H 0.05 1.24 8.08 -51.93 -0.42 0.82 16 LS Contribution 379.11 15.07 5.71 5.71 Total: -1.00 -32.98 379.11 -10.37 -43.35 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -6.38 Total: 10.51 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -4.16 Total: -7.53 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: -0.08 Total: -53.26 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.36 Total: -18.64 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -5.10 Total: 19.85 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.98 -10.37 -43.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083876249.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.463 kcal (2) G-P(sol) polarization free energy of solvation -32.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds