Wall clock time and date at job start Tue Mar 31 2020 05:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38257 * 120.00113 * 2 1 4 4 C 1.38208 * 120.00272 * 179.97438 * 3 2 1 5 5 C 1.38255 * 119.99941 * 0.02562 * 4 3 2 6 6 C 1.38215 * 120.00188 * 359.96051 * 5 4 3 7 7 C 1.50695 * 120.00278 * 179.97438 * 6 5 4 8 8 C 1.50708 * 115.54734 * 149.77573 * 7 6 5 9 9 O 1.21282 * 119.99772 * 99.24482 * 8 7 6 10 10 N 1.34780 * 119.99818 * 279.23880 * 8 7 6 11 11 C 1.46500 * 119.99796 * 174.80292 * 10 8 7 12 12 H 1.09002 * 110.64193 * 36.68615 * 11 10 8 13 13 C 1.54323 * 110.71578 * 273.54718 * 11 10 8 14 14 N 1.47024 * 107.27022 * 263.82730 * 13 11 10 15 15 C 1.36937 * 125.64526 * 181.02189 * 14 13 11 16 16 H 1.08000 * 120.00609 * 0.02562 * 15 14 13 17 17 C 1.38814 * 119.99613 * 179.97438 * 15 14 13 18 18 N 1.31618 * 120.00248 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99950 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.47213 * 60.00514 * 19 17 15 21 21 H 1.48503 * 109.47315 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47450 * 300.00358 * 19 17 15 23 23 C 1.47421 * 108.70398 * 1.29166 * 14 13 11 24 24 C 1.55136 * 104.71902 * 335.55285 * 23 14 13 25 25 H 1.08999 * 111.18738 * 279.18901 * 24 23 14 26 26 O 1.42902 * 110.93667 * 155.29454 * 24 23 14 27 27 C 1.52998 * 117.52111 * 295.47610 * 7 6 5 28 28 C 1.52998 * 60.00100 * 107.48072 * 27 7 6 29 29 C 1.38214 * 119.99936 * 180.21099 * 2 1 3 30 30 H 1.08999 * 109.47162 * 89.99793 * 1 2 3 31 31 H 1.08996 * 109.47204 * 210.00192 * 1 2 3 32 32 H 1.09003 * 109.47236 * 329.99926 * 1 2 3 33 33 H 1.08007 * 119.99562 * 359.97438 * 3 2 1 34 34 H 1.07996 * 120.00218 * 180.02562 * 4 3 2 35 35 H 1.07999 * 120.00157 * 179.97438 * 5 4 3 36 36 H 0.97002 * 119.99865 * 354.80491 * 10 8 7 37 37 H 1.09002 * 109.88501 * 144.41459 * 13 11 10 38 38 H 1.08997 * 110.01932 * 23.32062 * 13 11 10 39 39 H 0.97002 * 120.00248 * 179.97438 * 18 17 15 40 40 H 1.08997 * 110.36818 * 94.47885 * 23 14 13 41 41 H 1.08997 * 110.36639 * 216.80280 * 23 14 13 42 42 H 0.96699 * 114.00387 * 67.94949 * 26 24 23 43 43 H 1.08997 * 117.50237 * 214.97162 * 27 7 6 44 44 H 1.09006 * 117.49457 * 359.97438 * 27 7 6 45 45 H 1.08995 * 117.50202 * 252.51177 * 28 27 7 46 46 H 1.08996 * 117.49994 * 107.48799 * 28 27 7 47 47 H 1.07997 * 119.99884 * 0.03935 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0005 6 6 3.5807 -1.1970 0.0008 7 6 4.3341 -2.5020 0.0002 8 6 3.6420 -3.6524 0.6850 9 8 3.0416 -4.4765 0.0283 10 7 3.6904 -3.7654 2.0272 11 6 2.9247 -4.8164 2.7018 12 1 2.9187 -5.7296 2.1067 13 6 1.4844 -4.3431 2.9900 14 7 1.4567 -3.8468 4.3737 15 6 0.3561 -3.3549 5.0232 16 1 -0.5955 -3.3089 4.5145 17 6 0.4632 -2.9164 6.3359 18 7 1.6228 -2.9729 6.9561 19 14 -1.0383 -2.2461 7.2222 20 1 -2.0887 -3.2944 7.2788 21 1 -0.6615 -1.8473 8.6022 22 1 -1.5583 -1.0634 6.4902 23 6 2.8115 -3.9603 4.9439 24 6 3.4927 -5.0848 4.1204 25 1 3.1970 -6.0705 4.4797 26 8 4.9144 -4.9413 4.1386 27 6 5.1923 -2.8223 -1.2252 28 6 5.8597 -2.4370 0.0965 29 6 2.1980 -1.1970 -0.0044 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3634 0.8900 0.5139 33 1 1.6582 2.1327 -0.0004 34 1 4.1204 2.1326 0.0010 35 1 5.3517 0.0000 0.0005 36 1 4.2322 -3.1507 2.5464 37 1 0.7913 -5.1773 2.8816 38 1 1.2105 -3.5421 2.3034 39 1 1.6977 -2.6661 7.8732 40 1 3.3520 -3.0210 4.8273 41 1 2.7580 -4.2402 5.9959 42 1 5.3147 -5.0995 5.0045 43 1 5.2564 -3.8650 -1.5362 44 1 5.2117 -2.0891 -2.0316 45 1 6.3184 -1.4503 0.1599 46 1 6.3628 -3.2262 0.6551 47 1 1.6580 -2.1322 -0.0085 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084092621.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:27 Heat of formation + Delta-G solvation = -4.621338 kcal Electronic energy + Delta-G solvation = -29244.868124 eV Core-core repulsion = 25394.095956 eV Total energy + Delta-G solvation = -3850.772168 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.49432 -39.05933 -37.90581 -36.38491 -35.08440 -33.70675 -32.46416 -31.61466 -30.80689 -28.52686 -27.17695 -26.84087 -24.95378 -24.11019 -22.74454 -22.40676 -21.06387 -20.46857 -19.78585 -19.28077 -17.45539 -16.97518 -16.86012 -16.43015 -15.63993 -15.26637 -15.02457 -14.85855 -14.40243 -14.35990 -13.99869 -13.68808 -13.61187 -13.14258 -12.96889 -12.89827 -12.58788 -12.37977 -12.24817 -12.22523 -12.11898 -11.71457 -11.35203 -11.32429 -11.13573 -11.05356 -10.96324 -10.87434 -10.67178 -10.56972 -10.22965 -10.05508 -9.86195 -9.47150 -9.21710 -8.76483 -8.67546 -8.56754 -8.47394 -6.92849 -5.73316 -3.15143 1.34244 1.45827 2.83934 3.32956 3.36928 3.41155 3.42118 3.55738 3.99704 4.37562 4.41717 4.56386 4.74683 4.81911 4.90887 4.95291 5.08042 5.14992 5.27701 5.37225 5.38838 5.43219 5.51706 5.53878 5.65370 5.69329 5.69416 5.75893 5.80720 5.84968 5.90257 5.99441 6.11561 6.13021 6.21146 6.23031 6.48880 6.49539 6.60201 6.62196 6.69954 6.99115 7.05410 7.27090 7.51597 7.69514 7.91692 8.04127 8.24442 8.54666 9.13098 9.73712 10.36555 11.30758 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.010058 B = 0.004697 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.096216 B = 5959.667152 C = 7657.929289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.077 4.077 3 C -0.123 4.123 4 C -0.115 4.115 5 C -0.124 4.124 6 C -0.034 4.034 7 C -0.116 4.116 8 C 0.554 3.446 9 O -0.546 6.546 10 N -0.688 5.688 11 C 0.142 3.858 12 H 0.091 0.909 13 C 0.127 3.873 14 N -0.598 5.598 15 C -0.221 4.221 16 H 0.078 0.922 17 C -0.010 4.010 18 N -0.925 5.925 19 Si 0.916 3.084 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.129 3.871 24 C 0.064 3.936 25 H 0.071 0.929 26 O -0.566 6.566 27 C -0.136 4.136 28 C -0.161 4.161 29 C -0.102 4.102 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.407 0.593 37 H 0.035 0.965 38 H 0.031 0.969 39 H 0.253 0.747 40 H 0.020 0.980 41 H 0.111 0.889 42 H 0.378 0.622 43 H 0.104 0.896 44 H 0.103 0.897 45 H 0.107 0.893 46 H 0.105 0.895 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.037 4.164 -12.658 15.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.077 4.077 3 C -0.141 4.141 4 C -0.133 4.133 5 C -0.142 4.142 6 C -0.034 4.034 7 C -0.120 4.120 8 C 0.339 3.661 9 O -0.424 6.424 10 N -0.338 5.338 11 C 0.037 3.963 12 H 0.109 0.891 13 C 0.000 4.000 14 N -0.325 5.325 15 C -0.349 4.349 16 H 0.096 0.904 17 C -0.205 4.205 18 N -0.573 5.573 19 Si 0.746 3.254 20 H -0.211 1.211 21 H -0.215 1.215 22 H -0.212 1.212 23 C 0.003 3.997 24 C 0.003 3.997 25 H 0.089 0.911 26 O -0.371 6.371 27 C -0.173 4.173 28 C -0.198 4.198 29 C -0.120 4.120 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.242 0.758 37 H 0.053 0.947 38 H 0.048 0.952 39 H 0.064 0.936 40 H 0.038 0.962 41 H 0.129 0.871 42 H 0.225 0.775 43 H 0.122 0.878 44 H 0.121 0.879 45 H 0.125 0.875 46 H 0.123 0.877 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.420 3.785 -13.523 15.882 hybrid contribution -0.507 0.629 1.413 1.628 sum 6.913 4.414 -12.109 14.626 Atomic orbital electron populations 1.20809 0.91066 1.03333 1.02065 1.19898 0.96269 0.92857 0.98696 1.21025 0.94297 0.97424 1.01390 1.21022 0.94249 0.97635 1.00383 1.20927 0.99784 0.91662 1.01811 1.18641 0.93018 0.91440 1.00330 1.20092 0.93138 0.93897 1.04835 1.19214 0.79994 0.84643 0.82244 1.90670 1.44186 1.42463 1.65053 1.45619 1.48276 1.33949 1.05931 1.22023 0.91570 0.90608 0.92095 0.89145 1.21744 0.92814 0.97038 0.88411 1.44298 1.06216 1.74023 1.07997 1.19038 0.87683 1.33754 0.94406 0.90394 1.24763 0.97254 1.01556 0.96929 1.69724 1.22315 1.53112 1.12177 0.86133 0.81689 0.78817 0.78762 1.21076 1.21530 1.21188 1.22600 0.84207 0.93199 0.99675 1.23740 0.80275 1.00188 0.95459 0.91116 1.86331 1.20049 1.94257 1.36413 1.23030 0.99929 1.03310 0.91022 1.23223 0.91832 1.03973 1.00763 1.20928 0.93353 0.98088 0.99644 0.91302 0.91079 0.91457 0.86205 0.86067 0.85909 0.75797 0.94686 0.95157 0.93626 0.96170 0.87138 0.77471 0.87775 0.87852 0.87523 0.87688 0.85978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.44 10.01 36.00 0.36 -1.08 16 2 C -0.08 -1.09 5.88 -104.62 -0.62 -1.71 16 3 C -0.12 -1.54 9.70 -39.59 -0.38 -1.93 16 4 C -0.11 -1.35 10.05 -39.59 -0.40 -1.74 16 5 C -0.12 -1.52 9.36 -39.58 -0.37 -1.89 16 6 C -0.03 -0.49 5.48 -104.62 -0.57 -1.06 16 7 C -0.12 -1.63 2.33 -156.81 -0.37 -2.00 16 8 C 0.55 9.58 5.83 -10.98 -0.06 9.51 16 9 O -0.55 -10.98 16.70 5.56 0.09 -10.88 16 10 N -0.69 -12.09 4.78 -52.03 -0.25 -12.34 16 11 C 0.14 2.69 3.18 -66.10 -0.21 2.48 16 12 H 0.09 1.70 7.63 -51.93 -0.40 1.30 16 13 C 0.13 2.75 6.98 -3.06 -0.02 2.73 16 14 N -0.60 -14.94 3.39 -169.93 -0.58 -15.52 16 15 C -0.22 -6.04 10.27 -15.06 -0.15 -6.20 16 16 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 17 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 18 N -0.92 -26.02 10.08 55.49 0.56 -25.46 16 19 Si 0.92 21.75 29.55 -169.99 -5.02 16.73 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 C 0.13 2.96 5.62 -2.41 -0.01 2.94 16 24 C 0.06 1.17 4.23 -24.47 -0.10 1.07 16 25 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 26 O -0.57 -8.98 12.63 -35.23 -0.45 -9.43 16 27 C -0.14 -1.56 9.84 -26.73 -0.26 -1.82 16 28 C -0.16 -1.75 9.57 -26.73 -0.26 -2.00 16 29 C -0.10 -1.60 8.98 -39.58 -0.36 -1.96 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.96 8.09 -51.93 -0.42 0.54 16 32 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 33 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 34 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 35 H 0.12 1.21 5.95 -52.49 -0.31 0.90 16 36 H 0.41 7.05 8.20 -40.82 -0.33 6.71 16 37 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.03 0.69 8.05 -51.93 -0.42 0.28 16 39 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.11 2.83 5.85 -51.93 -0.30 2.53 16 42 H 0.38 4.58 9.12 45.56 0.42 5.00 16 43 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.11 0.95 6.10 -51.93 -0.32 0.64 16 46 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.12 2.11 7.36 -52.49 -0.39 1.72 16 LS Contribution 384.92 15.07 5.80 5.80 Total: -1.00 -31.84 384.92 -9.97 -41.81 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -6.24 Total: 14.30 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -3.88 Total: -5.01 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: -0.27 Total: -53.31 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.35 Total: -20.31 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.84 -9.97 -41.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084092621.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.185 kcal (2) G-P(sol) polarization free energy of solvation -31.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds