Wall clock time and date at job start Tue Mar 31 2020 05:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38257 * 120.00113 * 2 1 4 4 C 1.38208 * 120.00272 * 179.97438 * 3 2 1 5 5 C 1.38255 * 119.99941 * 0.02562 * 4 3 2 6 6 C 1.38215 * 120.00188 * 359.96051 * 5 4 3 7 7 C 1.50695 * 120.00278 * 179.97438 * 6 5 4 8 8 C 1.50708 * 115.54734 * 149.77573 * 7 6 5 9 9 O 1.21282 * 119.99772 * 99.24482 * 8 7 6 10 10 N 1.34780 * 119.99818 * 279.23880 * 8 7 6 11 11 C 1.46500 * 119.99796 * 174.80292 * 10 8 7 12 12 H 1.09002 * 110.64193 * 36.68615 * 11 10 8 13 13 C 1.54323 * 110.71578 * 273.54718 * 11 10 8 14 14 N 1.47024 * 107.27022 * 263.82730 * 13 11 10 15 15 C 1.36937 * 125.64526 * 181.02189 * 14 13 11 16 16 H 1.08000 * 120.00609 * 0.02562 * 15 14 13 17 17 C 1.38814 * 119.99613 * 179.97438 * 15 14 13 18 18 N 1.31618 * 120.00248 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99950 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.47213 * 60.00514 * 19 17 15 21 21 H 1.48503 * 109.47315 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47450 * 300.00358 * 19 17 15 23 23 C 1.47421 * 108.70398 * 1.29166 * 14 13 11 24 24 C 1.55136 * 104.71902 * 335.55285 * 23 14 13 25 25 H 1.08999 * 111.18738 * 279.18901 * 24 23 14 26 26 O 1.42902 * 110.93667 * 155.29454 * 24 23 14 27 27 C 1.52998 * 117.52111 * 295.47610 * 7 6 5 28 28 C 1.52998 * 60.00100 * 107.48072 * 27 7 6 29 29 C 1.38214 * 119.99936 * 180.21099 * 2 1 3 30 30 H 1.08999 * 109.47162 * 89.99793 * 1 2 3 31 31 H 1.08996 * 109.47204 * 210.00192 * 1 2 3 32 32 H 1.09003 * 109.47236 * 329.99926 * 1 2 3 33 33 H 1.08007 * 119.99562 * 359.97438 * 3 2 1 34 34 H 1.07996 * 120.00218 * 180.02562 * 4 3 2 35 35 H 1.07999 * 120.00157 * 179.97438 * 5 4 3 36 36 H 0.97002 * 119.99865 * 354.80491 * 10 8 7 37 37 H 1.09002 * 109.88501 * 144.41459 * 13 11 10 38 38 H 1.08997 * 110.01932 * 23.32062 * 13 11 10 39 39 H 0.97002 * 120.00248 * 179.97438 * 18 17 15 40 40 H 1.08997 * 110.36818 * 94.47885 * 23 14 13 41 41 H 1.08997 * 110.36639 * 216.80280 * 23 14 13 42 42 H 0.96699 * 114.00387 * 67.94949 * 26 24 23 43 43 H 1.08997 * 117.50237 * 214.97162 * 27 7 6 44 44 H 1.09006 * 117.49457 * 359.97438 * 27 7 6 45 45 H 1.08995 * 117.50202 * 252.51177 * 28 27 7 46 46 H 1.08996 * 117.49994 * 107.48799 * 28 27 7 47 47 H 1.07997 * 119.99884 * 0.03935 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0005 6 6 3.5807 -1.1970 0.0008 7 6 4.3341 -2.5020 0.0002 8 6 3.6420 -3.6524 0.6850 9 8 3.0416 -4.4765 0.0283 10 7 3.6904 -3.7654 2.0272 11 6 2.9247 -4.8164 2.7018 12 1 2.9187 -5.7296 2.1067 13 6 1.4844 -4.3431 2.9900 14 7 1.4567 -3.8468 4.3737 15 6 0.3561 -3.3549 5.0232 16 1 -0.5955 -3.3089 4.5145 17 6 0.4632 -2.9164 6.3359 18 7 1.6228 -2.9729 6.9561 19 14 -1.0383 -2.2461 7.2222 20 1 -2.0887 -3.2944 7.2788 21 1 -0.6615 -1.8473 8.6022 22 1 -1.5583 -1.0634 6.4902 23 6 2.8115 -3.9603 4.9439 24 6 3.4927 -5.0848 4.1204 25 1 3.1970 -6.0705 4.4797 26 8 4.9144 -4.9413 4.1386 27 6 5.1923 -2.8223 -1.2252 28 6 5.8597 -2.4370 0.0965 29 6 2.1980 -1.1970 -0.0044 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3634 0.8900 0.5139 33 1 1.6582 2.1327 -0.0004 34 1 4.1204 2.1326 0.0010 35 1 5.3517 0.0000 0.0005 36 1 4.2322 -3.1507 2.5464 37 1 0.7913 -5.1773 2.8816 38 1 1.2105 -3.5421 2.3034 39 1 1.6977 -2.6661 7.8732 40 1 3.3520 -3.0210 4.8273 41 1 2.7580 -4.2402 5.9959 42 1 5.3147 -5.0995 5.0045 43 1 5.2564 -3.8650 -1.5362 44 1 5.2117 -2.0891 -2.0316 45 1 6.3184 -1.4503 0.1599 46 1 6.3628 -3.2262 0.6551 47 1 1.6580 -2.1322 -0.0085 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084092621.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:26 Heat of formation + Delta-G solvation = -25.568068 kcal Electronic energy + Delta-G solvation = -29245.776442 eV Core-core repulsion = 25394.095956 eV Total energy + Delta-G solvation = -3851.680486 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.70368 -40.34462 -39.33040 -37.51123 -36.66415 -35.35259 -33.52389 -33.41672 -31.80050 -30.31279 -28.91610 -27.84716 -26.63313 -25.51712 -23.72557 -23.42987 -22.32783 -22.16549 -21.34293 -20.52102 -19.04883 -18.44959 -18.27061 -17.58910 -17.22066 -16.68006 -16.33177 -16.17119 -15.78804 -15.65116 -15.38298 -14.96231 -14.69988 -14.67920 -14.58329 -14.23844 -14.00042 -13.89467 -13.65163 -13.24966 -13.20517 -13.11216 -12.90533 -12.76913 -12.73926 -12.59970 -12.27109 -12.10436 -12.02573 -11.98429 -11.75587 -11.56275 -11.49821 -10.88818 -10.79828 -10.76996 -10.10622 -9.70343 -9.45339 -8.96391 -7.82264 -5.27329 0.35144 0.44169 1.45288 1.47558 1.49792 1.54125 2.05565 2.45057 2.55828 2.99312 3.07387 3.28460 3.43146 3.61741 3.64315 3.75553 3.83317 3.94853 3.97321 4.02444 4.05853 4.19476 4.28126 4.39436 4.45025 4.46497 4.60844 4.66985 4.70155 4.73766 4.79237 4.81534 4.86979 4.90530 4.96018 5.09840 5.14765 5.24417 5.38168 5.41911 5.47889 5.53965 5.59148 5.67711 5.69404 6.08348 6.21948 6.51576 6.84970 7.05215 7.16767 7.69214 8.31994 9.18831 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.010058 B = 0.004697 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.096216 B = 5959.667152 C = 7657.929289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.095 4.095 3 C -0.130 4.130 4 C -0.110 4.110 5 C -0.124 4.124 6 C -0.042 4.042 7 C -0.143 4.143 8 C 0.553 3.447 9 O -0.581 6.581 10 N -0.686 5.686 11 C 0.149 3.851 12 H 0.096 0.904 13 C 0.129 3.871 14 N -0.614 5.614 15 C -0.243 4.243 16 H 0.074 0.926 17 C -0.056 4.056 18 N -0.943 5.943 19 Si 0.978 3.022 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.282 1.282 23 C 0.138 3.862 24 C 0.089 3.911 25 H 0.084 0.916 26 O -0.560 6.560 27 C -0.128 4.128 28 C -0.136 4.136 29 C -0.136 4.136 30 H 0.084 0.916 31 H 0.047 0.953 32 H 0.080 0.920 33 H 0.143 0.857 34 H 0.156 0.844 35 H 0.154 0.846 36 H 0.409 0.591 37 H 0.036 0.964 38 H 0.011 0.989 39 H 0.250 0.750 40 H -0.003 1.003 41 H 0.086 0.914 42 H 0.398 0.602 43 H 0.096 0.904 44 H 0.123 0.877 45 H 0.135 0.865 46 H 0.107 0.893 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.867 5.703 -13.139 17.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.095 4.095 3 C -0.148 4.148 4 C -0.128 4.128 5 C -0.141 4.141 6 C -0.043 4.043 7 C -0.146 4.146 8 C 0.340 3.660 9 O -0.461 6.461 10 N -0.335 5.335 11 C 0.043 3.957 12 H 0.114 0.886 13 C 0.002 3.998 14 N -0.341 5.341 15 C -0.372 4.372 16 H 0.092 0.908 17 C -0.249 4.249 18 N -0.592 5.592 19 Si 0.806 3.194 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.209 1.209 23 C 0.012 3.988 24 C 0.028 3.972 25 H 0.102 0.898 26 O -0.367 6.367 27 C -0.165 4.165 28 C -0.172 4.172 29 C -0.154 4.154 30 H 0.103 0.897 31 H 0.066 0.934 32 H 0.099 0.901 33 H 0.161 0.839 34 H 0.174 0.826 35 H 0.171 0.829 36 H 0.244 0.756 37 H 0.054 0.946 38 H 0.029 0.971 39 H 0.060 0.940 40 H 0.015 0.985 41 H 0.104 0.896 42 H 0.248 0.752 43 H 0.115 0.885 44 H 0.141 0.859 45 H 0.153 0.847 46 H 0.125 0.875 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.276 5.317 -14.006 17.620 hybrid contribution -1.072 0.164 1.541 1.884 sum 8.204 5.481 -12.465 15.897 Atomic orbital electron populations 1.20814 0.90617 1.02746 1.02938 1.20139 0.96999 0.93205 0.99171 1.21352 0.95162 0.97464 1.00815 1.21481 0.94040 0.98888 0.98392 1.21262 1.01283 0.90804 1.00798 1.18759 0.92421 0.92467 1.00605 1.20037 0.94876 0.92598 1.07045 1.19841 0.79274 0.85021 0.81843 1.90635 1.45682 1.44182 1.65649 1.45597 1.48023 1.33639 1.06245 1.21834 0.90051 0.91101 0.92701 0.88600 1.21768 0.95105 0.96241 0.86651 1.44511 1.06484 1.73953 1.09197 1.19327 0.88498 1.34324 0.95033 0.90773 1.25525 0.99954 1.01960 0.97479 1.69942 1.23756 1.53457 1.12067 0.85171 0.78706 0.78217 0.77335 1.20271 1.21422 1.20884 1.22390 0.83637 0.93714 0.99025 1.23314 0.81337 0.98792 0.93725 0.89795 1.86305 1.18126 1.94162 1.38105 1.23138 0.98382 1.03553 0.91401 1.23383 0.88927 1.05477 0.99460 1.20864 0.94485 0.97408 1.02640 0.89739 0.93430 0.90129 0.83887 0.82632 0.82885 0.75563 0.94618 0.97079 0.94016 0.98531 0.89636 0.75185 0.88506 0.85918 0.84729 0.87482 0.89384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.94 10.01 71.24 0.71 -2.23 16 2 C -0.10 -2.73 5.88 -19.87 -0.12 -2.85 16 3 C -0.13 -3.03 9.70 22.27 0.22 -2.81 16 4 C -0.11 -2.24 10.05 22.27 0.22 -2.01 16 5 C -0.12 -2.69 9.36 22.27 0.21 -2.49 16 6 C -0.04 -1.18 5.48 -19.87 -0.11 -1.29 16 7 C -0.14 -3.89 2.33 -53.67 -0.13 -4.01 16 8 C 0.55 19.51 5.83 87.66 0.51 20.02 16 9 O -0.58 -24.27 16.70 -3.03 -0.05 -24.32 16 10 N -0.69 -24.39 4.78 -436.92 -2.09 -26.48 16 11 C 0.15 5.71 3.18 46.18 0.15 5.86 16 12 H 0.10 3.62 7.63 -2.39 -0.02 3.60 16 13 C 0.13 5.83 6.98 86.73 0.60 6.43 16 14 N -0.61 -31.68 3.39 -691.55 -2.35 -34.02 16 15 C -0.24 -13.68 10.27 84.03 0.86 -12.82 16 16 H 0.07 4.10 7.83 -2.91 -0.02 4.07 16 17 C -0.06 -3.12 5.49 84.86 0.47 -2.65 16 18 N -0.94 -53.94 10.08 21.65 0.22 -53.72 16 19 Si 0.98 45.09 29.55 68.60 2.03 47.12 16 20 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 21 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 22 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 23 C 0.14 6.46 5.62 86.94 0.49 6.95 16 24 C 0.09 3.24 4.23 32.06 0.14 3.38 16 25 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 26 O -0.56 -16.83 12.63 -148.98 -1.88 -18.71 16 27 C -0.13 -2.70 9.84 30.59 0.30 -2.39 16 28 C -0.14 -2.56 9.57 30.59 0.29 -2.27 16 29 C -0.14 -4.47 8.98 22.27 0.20 -4.27 16 30 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.05 1.40 8.09 -2.39 -0.02 1.38 16 32 H 0.08 1.79 8.09 -2.39 -0.02 1.77 16 33 H 0.14 2.57 8.06 -2.91 -0.02 2.54 16 34 H 0.16 2.07 8.06 -2.91 -0.02 2.04 16 35 H 0.15 2.30 5.95 -2.91 -0.02 2.29 16 36 H 0.41 14.14 8.20 -92.71 -0.76 13.38 16 37 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.01 0.55 8.05 -2.39 -0.02 0.53 16 39 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 40 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 41 H 0.09 4.48 5.85 -2.39 -0.01 4.47 16 42 H 0.40 8.79 9.12 -74.06 -0.68 8.11 16 43 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.12 2.10 8.14 -2.38 -0.02 2.08 16 45 H 0.13 1.78 6.10 -2.39 -0.01 1.76 16 46 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 47 H 0.09 3.39 7.36 -2.91 -0.02 3.37 16 Total: -1.00 -71.51 384.92 0.46 -71.05 By element: Atomic # 1 Polarization: 38.98 SS G_CDS: -0.43 Total: 38.55 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: 5.02 Total: 0.54 kcal Atomic # 7 Polarization: -110.01 SS G_CDS: -4.22 Total: -114.22 kcal Atomic # 8 Polarization: -41.10 SS G_CDS: -1.93 Total: -43.04 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -71.51 0.46 -71.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084092621.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.481 kcal (2) G-P(sol) polarization free energy of solvation -71.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds