Wall clock time and date at job start Tue Mar 31 2020 05:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38257 * 119.73270 * 2 1 4 4 C 1.37933 * 120.09194 * 180.02562 * 3 2 1 5 5 C 1.39497 * 119.77166 * 0.02562 * 4 3 2 6 6 C 1.47844 * 120.04439 * 179.97438 * 5 4 3 7 7 O 1.21551 * 119.99821 * 180.02562 * 6 5 4 8 8 N 1.34773 * 120.00076 * 0.05058 * 6 5 4 9 9 C 1.46494 * 120.00379 * 179.97438 * 8 6 5 10 10 H 1.09008 * 110.64123 * 36.68484 * 9 8 6 11 11 C 1.54329 * 110.72209 * 273.55221 * 9 8 6 12 12 N 1.47022 * 107.26966 * 219.44200 * 11 9 8 13 13 C 1.36931 * 125.65096 * 178.97591 * 12 11 9 14 14 H 1.08007 * 119.99863 * 359.97438 * 13 12 11 15 15 C 1.38813 * 120.00534 * 179.97438 * 13 12 11 16 16 N 1.31622 * 119.99593 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00281 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47192 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.47195 * 119.99748 * 17 15 13 20 20 H 1.48494 * 109.47503 * 239.99870 * 17 15 13 21 21 C 1.47430 * 108.70285 * 358.93464 * 12 11 9 22 22 C 1.54906 * 104.83009 * 24.13124 * 21 12 11 23 23 H 1.09000 * 111.00424 * 204.91406 * 22 21 12 24 24 O 1.42902 * 111.00248 * 81.06598 * 22 21 12 25 25 C 1.39779 * 119.91561 * 0.02698 * 5 4 3 26 26 C 1.37986 * 119.75695 * 359.96077 * 25 5 4 27 27 C 1.51703 * 109.83997 * 180.14942 * 26 25 5 28 28 C 1.54345 * 105.01956 * 16.91573 * 27 26 25 29 29 C 1.51349 * 130.41348 * 179.97438 * 25 5 4 30 30 H 1.09007 * 109.47126 * 269.97758 * 1 2 3 31 31 H 1.09003 * 109.47316 * 29.97964 * 1 2 3 32 32 H 1.08996 * 109.47274 * 149.98115 * 1 2 3 33 33 H 1.07997 * 119.95536 * 0.02562 * 3 2 1 34 34 H 1.08001 * 120.11843 * 180.02562 * 4 3 2 35 35 H 0.97008 * 119.99764 * 0.02562 * 8 6 5 36 36 H 1.09000 * 109.87877 * 338.85102 * 11 9 8 37 37 H 1.08994 * 109.88306 * 100.02418 * 11 9 8 38 38 H 0.96997 * 119.99746 * 180.02562 * 16 15 13 39 39 H 1.08998 * 110.36413 * 142.96821 * 21 12 11 40 40 H 1.08997 * 110.36998 * 265.17922 * 21 12 11 41 41 H 0.96699 * 114.00278 * 67.80444 * 24 22 21 42 42 H 1.09001 * 110.25302 * 258.10290 * 27 26 25 43 43 H 1.09003 * 110.49487 * 135.85524 * 27 26 25 44 44 H 1.09002 * 110.83060 * 215.61069 * 28 27 26 45 45 H 1.09000 * 110.82423 * 92.24124 * 28 27 26 46 46 H 1.09004 * 110.30651 * 43.92211 * 29 25 5 47 47 H 1.08994 * 110.38892 * 281.79802 * 29 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1927 1.2006 0.0000 4 6 3.5720 1.2092 -0.0005 5 6 4.2722 0.0027 -0.0016 6 6 5.7507 0.0050 -0.0028 7 8 6.3600 -1.0468 -0.0042 8 7 6.4228 1.1731 -0.0017 9 6 7.8877 1.1754 -0.0023 10 1 8.2730 0.3586 -0.6128 11 6 8.4345 1.0852 1.4381 12 7 9.6017 1.9757 1.5184 13 6 10.3616 2.1965 2.6359 14 1 10.1196 1.6950 3.5613 15 6 11.4431 3.0649 2.5794 16 7 11.7383 3.6758 1.4515 17 14 12.4793 3.3667 4.1040 18 1 11.9431 2.5654 5.2335 19 1 13.8836 2.9651 3.8356 20 1 12.4353 4.8089 4.4550 21 6 9.8190 2.5907 0.1962 22 6 8.4345 2.5406 -0.4967 23 1 8.5400 2.5495 -1.5816 24 8 7.6022 3.6155 -0.0564 25 6 3.5743 -1.2084 -0.0027 26 6 2.1945 -1.2036 -0.0019 27 6 1.6747 -2.6288 0.0003 28 6 2.8778 -3.4927 0.4345 29 6 4.0829 -2.6339 -0.0045 30 1 -0.3634 -0.0004 1.0277 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5141 33 1 1.6476 2.1329 0.0004 34 1 4.1081 2.1468 -0.0001 35 1 5.9365 2.0125 0.0001 36 1 7.6713 1.4100 2.1452 37 1 8.7342 0.0605 1.6573 38 1 12.4942 4.2823 1.4119 39 1 10.1502 3.6231 0.3080 40 1 10.5510 2.0178 -0.3730 41 1 7.9040 4.4889 -0.3413 42 1 1.3468 -2.9125 -0.9997 43 1 0.8560 -2.7354 0.7121 44 1 2.8748 -4.4508 -0.0852 45 1 2.8797 -3.6395 1.5146 46 1 4.9038 -2.7436 0.7042 47 1 4.4068 -2.9202 -1.0050 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084100232.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:18 Heat of formation + Delta-G solvation = -35.693476 kcal Electronic energy + Delta-G solvation = -28351.657002 eV Core-core repulsion = 24499.537445 eV Total energy + Delta-G solvation = -3852.119557 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.70296 -39.20603 -37.68390 -35.99862 -34.72608 -33.93790 -33.18295 -31.58417 -29.23515 -28.68586 -28.11648 -27.48382 -26.35093 -24.42075 -22.76032 -21.55799 -21.11911 -20.58649 -19.90750 -19.51232 -17.57421 -17.00106 -16.70567 -16.12736 -15.75442 -15.11172 -14.98911 -14.84487 -14.55361 -14.49490 -14.06025 -13.83426 -13.57390 -13.44117 -12.99935 -12.88045 -12.85134 -12.53955 -12.49132 -12.22104 -11.86046 -11.74191 -11.42537 -11.33731 -11.29673 -11.18631 -11.04625 -10.98612 -10.85779 -10.59405 -10.33118 -10.01575 -9.83419 -9.59060 -9.22283 -8.83895 -8.68593 -8.67371 -8.55372 -6.83589 -5.68619 -3.08074 0.79474 1.21867 2.93667 3.38062 3.40530 3.45880 3.48534 3.79747 4.22782 4.39772 4.48631 4.57680 4.67377 4.79393 4.87709 4.92171 4.97172 5.07924 5.26100 5.31980 5.37760 5.38349 5.44358 5.50118 5.53606 5.56998 5.64026 5.72290 5.74314 5.79672 5.92402 5.98144 6.05010 6.06370 6.10002 6.18267 6.29539 6.34173 6.44659 6.58917 6.73570 6.76995 6.98488 7.27026 7.57741 7.72814 7.86393 8.12441 8.32152 8.50096 9.19349 9.80264 10.43774 11.36742 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.020721 B = 0.002672 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.945587 B =10478.353675 C =10941.949391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.053 4.053 3 C -0.131 4.131 4 C -0.081 4.081 5 C -0.125 4.125 6 C 0.552 3.448 7 O -0.539 6.539 8 N -0.704 5.704 9 C 0.144 3.856 10 H 0.100 0.900 11 C 0.132 3.868 12 N -0.597 5.597 13 C -0.214 4.214 14 H 0.078 0.922 15 C -0.014 4.014 16 N -0.927 5.927 17 Si 0.916 3.084 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.291 1.291 21 C 0.127 3.873 22 C 0.068 3.932 23 H 0.059 0.941 24 O -0.562 6.562 25 C -0.029 4.029 26 C -0.113 4.113 27 C -0.077 4.077 28 C -0.124 4.124 29 C -0.081 4.081 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.406 0.594 36 H 0.029 0.971 37 H 0.029 0.971 38 H 0.251 0.749 39 H 0.115 0.885 40 H 0.023 0.977 41 H 0.379 0.621 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.091 0.909 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.477 -6.520 -7.093 24.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.054 4.054 3 C -0.149 4.149 4 C -0.100 4.100 5 C -0.128 4.128 6 C 0.339 3.661 7 O -0.417 6.417 8 N -0.355 5.355 9 C 0.038 3.962 10 H 0.118 0.882 11 C 0.005 3.995 12 N -0.323 5.323 13 C -0.342 4.342 14 H 0.096 0.904 15 C -0.209 4.209 16 N -0.577 5.577 17 Si 0.747 3.253 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.218 1.218 21 C 0.001 3.999 22 C 0.007 3.993 23 H 0.077 0.923 24 O -0.368 6.368 25 C -0.030 4.030 26 C -0.113 4.113 27 C -0.114 4.114 28 C -0.161 4.161 29 C -0.117 4.117 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.243 0.757 36 H 0.047 0.953 37 H 0.046 0.954 38 H 0.062 0.938 39 H 0.133 0.867 40 H 0.041 0.959 41 H 0.227 0.773 42 H 0.097 0.903 43 H 0.092 0.908 44 H 0.095 0.905 45 H 0.090 0.910 46 H 0.109 0.891 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -22.167 -7.650 -6.741 24.400 hybrid contribution 0.791 1.197 0.508 1.522 sum -21.376 -6.452 -6.233 23.182 Atomic orbital electron populations 1.20821 0.91172 1.02831 1.02459 1.19621 0.95999 0.91869 0.97883 1.20846 0.93831 0.97414 1.02806 1.21273 0.94472 0.96979 0.97229 1.19602 0.92947 0.93132 1.07092 1.18325 0.86943 0.84136 0.76691 1.90738 1.69697 1.31134 1.50169 1.45783 1.07341 1.08446 1.73966 1.22144 0.78624 0.96780 0.98605 0.88210 1.21596 0.90460 0.94233 0.93230 1.44302 1.30620 1.49516 1.07868 1.19153 1.05846 1.20822 0.88397 0.90374 1.24758 0.98802 0.99780 0.97519 1.69731 1.30312 1.33547 1.24110 0.85958 0.79941 0.77582 0.81809 1.20520 1.21769 1.21767 1.22594 0.89516 1.02843 0.84904 1.23574 0.93680 0.85861 0.96178 0.92340 1.86234 1.52984 1.17414 1.80121 1.20562 0.93439 0.94500 0.94462 1.20484 0.93680 0.94741 1.02358 1.21071 0.98388 0.90115 1.01838 1.22363 0.93981 0.98209 1.01578 1.21105 0.98296 0.89161 1.03180 0.90954 0.91386 0.91453 0.85319 0.85152 0.75719 0.95296 0.95356 0.93804 0.86720 0.95949 0.77312 0.90332 0.90770 0.90523 0.90960 0.89070 0.89840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 9.86 36.01 0.35 -0.43 16 2 C -0.05 -0.53 5.89 -104.48 -0.62 -1.15 16 3 C -0.13 -1.33 9.67 -39.69 -0.38 -1.71 16 4 C -0.08 -0.96 9.54 -39.22 -0.37 -1.33 16 5 C -0.12 -1.78 5.88 -104.92 -0.62 -2.40 16 6 C 0.55 9.37 7.77 -12.33 -0.10 9.27 16 7 O -0.54 -10.57 14.43 5.32 0.08 -10.50 16 8 N -0.70 -11.67 5.04 -52.98 -0.27 -11.94 16 9 C 0.14 2.75 3.12 -66.10 -0.21 2.54 16 10 H 0.10 1.94 7.69 -51.92 -0.40 1.54 16 11 C 0.13 3.02 6.99 -3.06 -0.02 3.00 16 12 N -0.60 -15.61 3.39 -170.07 -0.58 -16.19 16 13 C -0.21 -6.08 10.27 -15.06 -0.15 -6.24 16 14 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 15 C -0.01 -0.39 5.49 -17.43 -0.10 -0.49 16 16 N -0.93 -26.66 10.09 55.49 0.56 -26.10 16 17 Si 0.92 22.31 29.55 -169.99 -5.02 17.28 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 C 0.13 3.00 5.62 -2.53 -0.01 2.99 16 22 C 0.07 1.24 4.28 -24.59 -0.11 1.14 16 23 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 24 O -0.56 -9.58 12.23 -35.23 -0.43 -10.01 16 25 C -0.03 -0.38 6.03 -103.82 -0.63 -1.01 16 26 C -0.11 -1.24 6.00 -104.08 -0.62 -1.86 16 27 C -0.08 -0.65 6.11 -26.68 -0.16 -0.81 16 28 C -0.12 -1.11 7.07 -25.32 -0.18 -1.29 16 29 C -0.08 -0.99 5.58 -26.86 -0.15 -1.14 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 32 H 0.07 0.40 7.65 -51.93 -0.40 0.00 16 33 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.13 1.37 6.40 -52.49 -0.34 1.04 16 35 H 0.41 6.06 5.59 -40.82 -0.23 5.83 16 36 H 0.03 0.69 8.03 -51.93 -0.42 0.27 16 37 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.25 6.99 8.31 -40.82 -0.34 6.66 16 39 H 0.12 2.98 5.88 -51.93 -0.31 2.67 16 40 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.38 5.17 9.12 45.56 0.42 5.59 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.09 1.29 7.19 -51.93 -0.37 0.92 16 47 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 374.33 15.07 5.64 5.64 Total: -1.00 -33.11 374.33 -10.33 -43.44 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -6.23 Total: 9.28 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -4.07 Total: -0.91 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: -0.28 Total: -54.22 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.35 Total: -20.51 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.11 -10.33 -43.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084100232.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.746 kcal (2) G-P(sol) polarization free energy of solvation -33.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds