Wall clock time and date at job start Tue Mar 31 2020 05:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38257 * 119.73270 * 2 1 4 4 C 1.37933 * 120.09194 * 180.02562 * 3 2 1 5 5 C 1.39497 * 119.77166 * 0.02562 * 4 3 2 6 6 C 1.47844 * 120.04439 * 179.97438 * 5 4 3 7 7 O 1.21551 * 119.99821 * 180.02562 * 6 5 4 8 8 N 1.34773 * 120.00076 * 0.05058 * 6 5 4 9 9 C 1.46494 * 120.00379 * 179.97438 * 8 6 5 10 10 H 1.09008 * 110.64123 * 36.68484 * 9 8 6 11 11 C 1.54329 * 110.72209 * 273.55221 * 9 8 6 12 12 N 1.47022 * 107.26966 * 219.44200 * 11 9 8 13 13 C 1.36931 * 125.65096 * 178.97591 * 12 11 9 14 14 H 1.08007 * 119.99863 * 359.97438 * 13 12 11 15 15 C 1.38813 * 120.00534 * 179.97438 * 13 12 11 16 16 N 1.31622 * 119.99593 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00281 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47192 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.47195 * 119.99748 * 17 15 13 20 20 H 1.48494 * 109.47503 * 239.99870 * 17 15 13 21 21 C 1.47430 * 108.70285 * 358.93464 * 12 11 9 22 22 C 1.54906 * 104.83009 * 24.13124 * 21 12 11 23 23 H 1.09000 * 111.00424 * 204.91406 * 22 21 12 24 24 O 1.42902 * 111.00248 * 81.06598 * 22 21 12 25 25 C 1.39779 * 119.91561 * 0.02698 * 5 4 3 26 26 C 1.37986 * 119.75695 * 359.96077 * 25 5 4 27 27 C 1.51703 * 109.83997 * 180.14942 * 26 25 5 28 28 C 1.54345 * 105.01956 * 16.91573 * 27 26 25 29 29 C 1.51349 * 130.41348 * 179.97438 * 25 5 4 30 30 H 1.09007 * 109.47126 * 269.97758 * 1 2 3 31 31 H 1.09003 * 109.47316 * 29.97964 * 1 2 3 32 32 H 1.08996 * 109.47274 * 149.98115 * 1 2 3 33 33 H 1.07997 * 119.95536 * 0.02562 * 3 2 1 34 34 H 1.08001 * 120.11843 * 180.02562 * 4 3 2 35 35 H 0.97008 * 119.99764 * 0.02562 * 8 6 5 36 36 H 1.09000 * 109.87877 * 338.85102 * 11 9 8 37 37 H 1.08994 * 109.88306 * 100.02418 * 11 9 8 38 38 H 0.96997 * 119.99746 * 180.02562 * 16 15 13 39 39 H 1.08998 * 110.36413 * 142.96821 * 21 12 11 40 40 H 1.08997 * 110.36998 * 265.17922 * 21 12 11 41 41 H 0.96699 * 114.00278 * 67.80444 * 24 22 21 42 42 H 1.09001 * 110.25302 * 258.10290 * 27 26 25 43 43 H 1.09003 * 110.49487 * 135.85524 * 27 26 25 44 44 H 1.09002 * 110.83060 * 215.61069 * 28 27 26 45 45 H 1.09000 * 110.82423 * 92.24124 * 28 27 26 46 46 H 1.09004 * 110.30651 * 43.92211 * 29 25 5 47 47 H 1.08994 * 110.38892 * 281.79802 * 29 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1927 1.2006 0.0000 4 6 3.5720 1.2092 -0.0005 5 6 4.2722 0.0027 -0.0016 6 6 5.7507 0.0050 -0.0028 7 8 6.3600 -1.0468 -0.0042 8 7 6.4228 1.1731 -0.0017 9 6 7.8877 1.1754 -0.0023 10 1 8.2730 0.3586 -0.6128 11 6 8.4345 1.0852 1.4381 12 7 9.6017 1.9757 1.5184 13 6 10.3616 2.1965 2.6359 14 1 10.1196 1.6950 3.5613 15 6 11.4431 3.0649 2.5794 16 7 11.7383 3.6758 1.4515 17 14 12.4793 3.3667 4.1040 18 1 11.9431 2.5654 5.2335 19 1 13.8836 2.9651 3.8356 20 1 12.4353 4.8089 4.4550 21 6 9.8190 2.5907 0.1962 22 6 8.4345 2.5406 -0.4967 23 1 8.5400 2.5495 -1.5816 24 8 7.6022 3.6155 -0.0564 25 6 3.5743 -1.2084 -0.0027 26 6 2.1945 -1.2036 -0.0019 27 6 1.6747 -2.6288 0.0003 28 6 2.8778 -3.4927 0.4345 29 6 4.0829 -2.6339 -0.0045 30 1 -0.3634 -0.0004 1.0277 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5141 33 1 1.6476 2.1329 0.0004 34 1 4.1081 2.1468 -0.0001 35 1 5.9365 2.0125 0.0001 36 1 7.6713 1.4100 2.1452 37 1 8.7342 0.0605 1.6573 38 1 12.4942 4.2823 1.4119 39 1 10.1502 3.6231 0.3080 40 1 10.5510 2.0178 -0.3730 41 1 7.9040 4.4889 -0.3413 42 1 1.3468 -2.9125 -0.9997 43 1 0.8560 -2.7354 0.7121 44 1 2.8748 -4.4508 -0.0852 45 1 2.8797 -3.6395 1.5146 46 1 4.9038 -2.7436 0.7042 47 1 4.4068 -2.9202 -1.0050 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084100232.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:17 Heat of formation + Delta-G solvation = -57.899975 kcal Electronic energy + Delta-G solvation = -28352.619948 eV Core-core repulsion = 24499.537445 eV Total energy + Delta-G solvation = -3853.082503 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.72246 -40.52620 -39.20906 -36.82513 -36.40461 -35.44716 -34.17876 -33.40893 -30.44109 -30.04747 -29.03821 -28.83675 -27.62462 -26.27200 -23.74981 -22.58353 -22.25965 -22.15862 -21.30136 -20.74947 -19.26214 -18.33945 -18.26144 -17.25981 -16.89318 -16.60994 -16.36078 -16.07392 -15.77946 -15.74352 -15.62039 -14.94460 -14.70063 -14.45695 -14.37617 -14.31302 -14.11533 -13.72249 -13.53292 -13.25377 -13.07773 -12.98096 -12.91422 -12.77659 -12.60268 -12.31423 -12.25387 -12.13386 -12.08420 -11.97913 -11.91943 -11.83427 -11.74478 -10.97863 -10.83833 -10.74802 -10.19255 -9.57405 -9.50722 -8.93460 -7.83314 -5.26821 -0.15866 0.36723 1.44823 1.45592 1.56164 1.80352 2.05427 2.46960 2.79096 3.16729 3.27604 3.42424 3.57471 3.62715 3.76973 3.82972 3.91954 3.93971 4.14874 4.16716 4.18111 4.26175 4.35706 4.44285 4.51744 4.68920 4.73006 4.78799 4.81555 4.87070 4.88673 4.91679 4.94763 5.03228 5.09767 5.18265 5.27262 5.30900 5.31632 5.34286 5.42612 5.45695 5.50343 5.61548 5.68685 5.96895 6.22881 6.54600 6.88623 7.06232 7.18816 7.69857 8.33080 9.19082 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.020721 B = 0.002672 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.945587 B =10478.353675 C =10941.949391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.049 4.049 3 C -0.130 4.130 4 C -0.085 4.085 5 C -0.154 4.154 6 C 0.549 3.451 7 O -0.575 6.575 8 N -0.695 5.695 9 C 0.155 3.845 10 H 0.096 0.904 11 C 0.134 3.866 12 N -0.615 5.615 13 C -0.242 4.242 14 H 0.071 0.929 15 C -0.060 4.060 16 N -0.945 5.945 17 Si 0.982 3.018 18 H -0.273 1.273 19 H -0.289 1.289 20 H -0.285 1.285 21 C 0.127 3.873 22 C 0.092 3.908 23 H 0.096 0.904 24 O -0.563 6.563 25 C -0.055 4.055 26 C -0.117 4.117 27 C -0.072 4.072 28 C -0.118 4.118 29 C -0.084 4.084 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.159 0.841 34 H 0.140 0.860 35 H 0.416 0.584 36 H 0.019 0.981 37 H 0.009 0.991 38 H 0.250 0.750 39 H 0.093 0.907 40 H 0.002 0.998 41 H 0.397 0.603 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.072 0.928 46 H 0.059 0.941 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.628 -5.900 -7.488 27.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.050 4.050 3 C -0.148 4.148 4 C -0.103 4.103 5 C -0.157 4.157 6 C 0.338 3.662 7 O -0.456 6.456 8 N -0.347 5.347 9 C 0.048 3.952 10 H 0.113 0.887 11 C 0.007 3.993 12 N -0.342 5.342 13 C -0.371 4.371 14 H 0.089 0.911 15 C -0.253 4.253 16 N -0.594 5.594 17 Si 0.810 3.190 18 H -0.198 1.198 19 H -0.216 1.216 20 H -0.212 1.212 21 C 0.002 3.998 22 C 0.031 3.969 23 H 0.114 0.886 24 O -0.371 6.371 25 C -0.056 4.056 26 C -0.117 4.117 27 C -0.109 4.109 28 C -0.155 4.155 29 C -0.121 4.121 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.177 0.823 34 H 0.158 0.842 35 H 0.254 0.746 36 H 0.037 0.963 37 H 0.027 0.973 38 H 0.060 0.940 39 H 0.111 0.889 40 H 0.019 0.981 41 H 0.247 0.753 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.114 0.886 45 H 0.091 0.909 46 H 0.078 0.922 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -25.353 -7.003 -7.152 27.257 hybrid contribution 1.728 1.005 0.645 2.100 sum -23.625 -5.998 -6.506 25.228 Atomic orbital electron populations 1.20908 0.88441 1.04253 1.03532 1.20089 0.97975 0.91264 0.95632 1.21234 0.93106 0.98940 1.01522 1.21439 0.95528 0.96333 0.97020 1.19534 0.91027 0.94823 1.10284 1.18877 0.88352 0.83444 0.75505 1.90713 1.70756 1.32309 1.51825 1.45625 1.06051 1.09055 1.73963 1.21825 0.80223 0.97312 0.95815 0.88651 1.21608 0.89448 0.92517 0.95743 1.44562 1.31113 1.50271 1.08235 1.19412 1.06993 1.21472 0.89186 0.91068 1.25564 0.99738 0.99483 1.00484 1.69945 1.30393 1.33532 1.25550 0.84964 0.77976 0.77458 0.78609 1.19812 1.21632 1.21189 1.22508 0.92335 1.00750 0.84232 1.23260 0.90381 0.85827 0.97403 0.88648 1.86202 1.52284 1.18208 1.80440 1.20826 0.94928 0.94383 0.95458 1.20854 0.92641 0.96580 1.01617 1.21131 0.98314 0.88085 1.03333 1.22368 0.92660 0.98630 1.01829 1.21098 0.98881 0.90100 1.01979 0.89829 0.89848 0.90279 0.82344 0.84214 0.74561 0.96343 0.97333 0.93980 0.88931 0.98057 0.75264 0.88697 0.88659 0.88603 0.90921 0.92229 0.90597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 9.86 71.24 0.70 -0.36 16 2 C -0.05 -0.83 5.89 -19.77 -0.12 -0.94 16 3 C -0.13 -2.27 9.67 22.20 0.21 -2.06 16 4 C -0.08 -1.90 9.54 22.50 0.21 -1.69 16 5 C -0.15 -4.44 5.88 -20.06 -0.12 -4.55 16 6 C 0.55 19.31 7.77 86.79 0.67 19.99 16 7 O -0.57 -23.96 14.43 -3.88 -0.06 -24.02 16 8 N -0.69 -23.26 5.04 -439.79 -2.21 -25.47 16 9 C 0.15 6.02 3.12 46.18 0.14 6.16 16 10 H 0.10 3.83 7.69 -2.38 -0.02 3.81 16 11 C 0.13 6.40 6.99 86.73 0.61 7.00 16 12 N -0.62 -33.32 3.39 -691.98 -2.35 -35.67 16 13 C -0.24 -14.18 10.27 84.03 0.86 -13.31 16 14 H 0.07 4.13 7.83 -2.91 -0.02 4.11 16 15 C -0.06 -3.43 5.49 84.86 0.47 -2.97 16 16 N -0.94 -55.21 10.09 21.65 0.22 -54.99 16 17 Si 0.98 46.36 29.55 68.60 2.03 48.39 16 18 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 19 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 20 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 21 C 0.13 6.14 5.62 86.85 0.49 6.63 16 22 C 0.09 3.33 4.28 31.98 0.14 3.47 16 23 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 24 O -0.56 -18.40 12.23 -148.98 -1.82 -20.22 16 25 C -0.05 -1.46 6.03 -19.34 -0.12 -1.58 16 26 C -0.12 -2.34 6.00 -19.51 -0.12 -2.46 16 27 C -0.07 -1.01 6.11 30.62 0.19 -0.82 16 28 C -0.12 -1.97 7.07 31.51 0.22 -1.75 16 29 C -0.08 -2.13 5.58 30.51 0.17 -1.96 16 30 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.08 0.56 8.08 -2.39 -0.02 0.54 16 32 H 0.08 0.59 7.65 -2.39 -0.02 0.57 16 33 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 34 H 0.14 2.73 6.40 -2.91 -0.02 2.71 16 35 H 0.42 12.13 5.59 -92.70 -0.52 11.62 16 36 H 0.02 0.91 8.03 -2.39 -0.02 0.90 16 37 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 39 H 0.09 4.91 5.88 -2.39 -0.01 4.90 16 40 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 41 H 0.40 10.06 9.12 -74.06 -0.68 9.39 16 42 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.06 1.85 7.19 -2.38 -0.02 1.83 16 47 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -74.85 374.33 0.24 -74.61 By element: Atomic # 1 Polarization: 28.77 SS G_CDS: -0.19 Total: 28.58 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: 4.62 Total: 8.80 kcal Atomic # 7 Polarization: -111.78 SS G_CDS: -4.34 Total: -116.13 kcal Atomic # 8 Polarization: -42.36 SS G_CDS: -1.88 Total: -44.24 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -74.85 0.24 -74.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084100232.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.708 kcal (2) G-P(sol) polarization free energy of solvation -74.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds