Wall clock time and date at job start Tue Mar 31 2020 05:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50696 * 110.27264 * 2 1 4 4 O 1.21282 * 120.00451 * 122.07507 * 3 2 1 5 5 N 1.34779 * 119.99963 * 302.07755 * 3 2 1 6 6 C 1.46497 * 120.00337 * 179.97438 * 5 3 2 7 7 H 1.09000 * 110.88381 * 31.11975 * 6 5 3 8 8 C 1.55123 * 111.19641 * 267.18981 * 6 5 3 9 9 N 1.47420 * 104.72348 * 279.18837 * 8 6 5 10 10 C 1.36941 * 125.65328 * 155.81149 * 9 8 6 11 11 H 1.08004 * 119.99682 * 5.56440 * 10 9 8 12 12 C 1.38809 * 120.00409 * 185.55417 * 10 9 8 13 13 N 1.31621 * 120.00091 * 7.32909 * 12 10 9 14 14 Si 1.86797 * 120.00086 * 187.32322 * 12 10 9 15 15 H 1.48496 * 109.47097 * 84.99270 * 14 12 10 16 16 H 1.48507 * 109.47357 * 324.99550 * 14 12 10 17 17 H 1.48499 * 109.47352 * 204.99398 * 14 12 10 18 18 C 1.47025 * 108.70274 * 335.55601 * 9 8 6 19 19 C 1.54317 * 107.27002 * 1.28135 * 18 9 8 20 20 H 1.09002 * 110.72105 * 263.83122 * 19 18 9 21 21 O 1.42902 * 110.71826 * 140.73854 * 19 18 9 22 22 C 1.54351 * 110.30544 * 122.07692 * 2 1 3 23 23 C 1.54338 * 102.38916 * 92.66920 * 22 2 1 24 24 C 1.51370 * 105.17675 * 26.34819 * 23 22 2 25 25 C 1.38491 * 130.39895 * 162.79034 * 24 23 22 26 26 C 1.38099 * 120.22154 * 180.02562 * 25 24 23 27 27 C 1.38256 * 119.93101 * 0.02562 * 26 25 24 28 28 C 1.38104 * 119.93557 * 359.97438 * 27 26 25 29 29 C 1.38212 * 109.75437 * 342.81529 * 24 23 22 30 30 H 1.09001 * 109.47374 * 59.29436 * 1 2 3 31 31 H 1.08997 * 109.47335 * 179.30380 * 1 2 3 32 32 H 1.09002 * 109.46975 * 299.30203 * 1 2 3 33 33 H 0.97002 * 120.00096 * 0.02562 * 5 3 2 34 34 H 1.09005 * 110.49943 * 160.34675 * 8 6 5 35 35 H 1.09001 * 110.34282 * 37.95151 * 8 6 5 36 36 H 0.97001 * 120.00005 * 179.97438 * 13 12 10 37 37 H 1.09000 * 109.88454 * 120.70691 * 18 9 8 38 38 H 1.09003 * 109.87921 * 241.71412 * 18 9 8 39 39 H 0.96699 * 114.00112 * 61.45597 * 21 19 18 40 40 H 1.08998 * 110.82170 * 210.89419 * 22 2 1 41 41 H 1.09001 * 110.82088 * 334.24648 * 22 2 1 42 42 H 1.09003 * 110.30430 * 145.27536 * 23 22 2 43 43 H 1.08998 * 110.30423 * 267.32470 * 23 22 2 44 44 H 1.08000 * 119.89159 * 0.03064 * 25 24 23 45 45 H 1.07996 * 120.04002 * 179.97438 * 26 25 24 46 46 H 1.08002 * 120.03456 * 179.97438 * 27 26 25 47 47 H 1.07996 * 119.89184 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0521 1.4136 0.0000 4 8 2.7854 1.7893 0.8900 5 7 1.7041 2.2605 -0.9890 6 6 2.2112 3.6349 -0.9888 7 1 3.1984 3.6848 -0.5293 8 6 1.2215 4.5978 -0.2819 9 7 0.1963 4.8944 -1.2990 10 6 -1.0879 5.2958 -1.0444 11 1 -1.3971 5.5061 -0.0312 12 6 -1.9922 5.4328 -2.0886 13 7 -1.6621 5.0405 -3.3009 14 14 -3.6778 6.1735 -1.7733 15 1 -3.5890 7.6541 -1.8444 16 1 -4.1514 5.7702 -0.4247 17 1 -4.6331 5.6850 -2.7999 18 6 0.7829 4.6936 -2.6321 19 6 2.2366 4.2186 -2.4262 20 1 2.9293 5.0579 -2.4895 21 8 2.5788 3.2102 -3.3792 22 6 2.0656 -0.7688 1.2266 23 6 2.2463 -2.1967 0.6694 24 6 2.4687 -2.0168 -0.8170 25 6 2.9903 -2.8884 -1.7584 26 6 3.1003 -2.5004 -3.0792 27 6 2.6891 -1.2377 -3.4638 28 6 2.1688 -0.3671 -2.5265 29 6 2.0572 -0.7547 -1.2016 30 1 -0.3634 0.5247 -0.8836 31 1 -0.3634 -1.0275 -0.0125 32 1 -0.3633 0.5030 0.8962 33 1 1.1173 1.9603 -1.7006 34 1 1.7303 5.5127 0.0219 35 1 0.7693 4.1097 0.5814 36 1 -2.2942 5.1359 -4.0304 37 1 0.2185 3.9356 -3.1752 38 1 0.7722 5.6319 -3.1869 39 1 2.5345 3.5067 -4.2986 40 1 3.0200 -0.3574 1.5552 41 1 1.3394 -0.7557 2.0394 42 1 3.1131 -2.6741 1.1265 43 1 1.3497 -2.7895 0.8502 44 1 3.3120 -3.8748 -1.4587 45 1 3.5079 -3.1823 -3.8109 46 1 2.7748 -0.9324 -4.4963 47 1 1.8474 0.6190 -2.8278 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084108493.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:08 Heat of formation + Delta-G solvation = -33.034238 kcal Electronic energy + Delta-G solvation = -29718.097116 eV Core-core repulsion = 25866.092873 eV Total energy + Delta-G solvation = -3852.004244 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.92250 -39.07048 -37.77806 -35.76331 -35.06641 -33.77339 -32.27274 -31.29141 -29.76713 -28.80271 -28.29218 -27.10571 -25.33048 -24.42874 -22.67688 -22.18355 -20.97572 -20.45072 -19.80885 -19.34771 -17.30330 -16.83223 -16.64203 -16.01010 -15.81247 -15.27482 -15.00627 -14.74416 -14.56002 -14.37384 -13.98124 -13.56698 -13.49677 -13.12810 -12.99305 -12.81491 -12.45213 -12.43032 -12.34382 -12.16646 -11.95120 -11.62426 -11.46476 -11.35577 -11.27436 -11.06738 -10.89374 -10.77083 -10.74804 -10.62503 -10.21093 -10.12689 -9.87932 -9.44800 -9.31130 -8.79215 -8.74631 -8.51273 -8.46827 -6.91513 -5.79027 -3.15100 1.34513 1.43104 2.99926 3.35555 3.41398 3.42218 3.53175 3.82268 4.33113 4.40312 4.47941 4.57783 4.86977 4.97365 5.02345 5.11987 5.18488 5.23550 5.27635 5.38909 5.46729 5.50384 5.54272 5.59733 5.64199 5.67951 5.80430 5.85149 5.88833 5.99601 6.00048 6.09785 6.14188 6.23944 6.25319 6.31729 6.45981 6.47035 6.57483 6.58914 6.67591 7.00915 7.04449 7.20573 7.46700 7.67240 7.99334 8.06083 8.15827 8.63536 9.11205 9.72171 10.36230 11.30484 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.014560 B = 0.003835 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.676331 B = 7298.819049 C = 7525.323885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.039 4.039 3 C 0.528 3.472 4 O -0.552 6.552 5 N -0.686 5.686 6 C 0.140 3.860 7 H 0.092 0.908 8 C 0.123 3.877 9 N -0.598 5.598 10 C -0.227 4.227 11 H 0.078 0.922 12 C -0.006 4.006 13 N -0.921 5.921 14 Si 0.912 3.088 15 H -0.289 1.289 16 H -0.281 1.281 17 H -0.291 1.291 18 C 0.143 3.857 19 C 0.066 3.934 20 H 0.065 0.935 21 O -0.562 6.562 22 C -0.101 4.101 23 C -0.081 4.081 24 C -0.090 4.090 25 C -0.114 4.114 26 C -0.119 4.119 27 C -0.118 4.118 28 C -0.092 4.092 29 C -0.085 4.085 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.406 0.594 34 H 0.032 0.968 35 H 0.050 0.950 36 H 0.252 0.748 37 H 0.074 0.926 38 H 0.032 0.968 39 H 0.377 0.623 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.080 0.920 44 H 0.117 0.883 45 H 0.121 0.879 46 H 0.124 0.876 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.677 -14.053 1.021 16.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.042 4.042 3 C 0.313 3.687 4 O -0.430 6.430 5 N -0.336 5.336 6 C 0.034 3.966 7 H 0.110 0.890 8 C -0.004 4.004 9 N -0.325 5.325 10 C -0.355 4.355 11 H 0.096 0.904 12 C -0.202 4.202 13 N -0.569 5.569 14 Si 0.742 3.258 15 H -0.216 1.216 16 H -0.207 1.207 17 H -0.217 1.217 18 C 0.017 3.983 19 C 0.006 3.994 20 H 0.083 0.917 21 O -0.367 6.367 22 C -0.139 4.139 23 C -0.118 4.118 24 C -0.090 4.090 25 C -0.132 4.132 26 C -0.137 4.137 27 C -0.136 4.136 28 C -0.110 4.110 29 C -0.086 4.086 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.242 0.758 34 H 0.050 0.950 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.092 0.908 38 H 0.050 0.950 39 H 0.224 0.776 40 H 0.108 0.892 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.098 0.902 44 H 0.136 0.864 45 H 0.139 0.861 46 H 0.142 0.858 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 9.071 -14.081 2.065 16.877 hybrid contribution -1.323 0.821 -0.953 1.825 sum 7.748 -13.260 1.112 15.398 Atomic orbital electron populations 1.21794 0.91100 1.02743 1.03463 1.20342 0.97343 0.92171 0.94360 1.20216 0.80323 0.86588 0.81564 1.90630 1.37654 1.77955 1.36787 1.45600 1.50041 1.11222 1.26736 1.22210 0.97838 0.81740 0.94862 0.89013 1.22067 0.90264 0.94848 0.93229 1.44297 1.08306 1.80024 0.99921 1.19047 0.84989 1.37793 0.93684 0.90393 1.24772 0.98291 1.01493 0.95690 1.69905 1.35311 1.51799 0.99872 0.86140 0.83540 0.78952 0.77155 1.21575 1.20706 1.21702 1.21943 0.87631 1.00204 0.88500 1.23491 0.98352 0.89613 0.87971 0.91738 1.86399 1.91707 1.39736 1.18810 1.22315 1.03051 0.93044 0.95466 1.21067 1.02079 0.97781 0.90848 1.20541 0.98407 0.94299 0.95794 1.20547 1.00836 0.99155 0.92669 1.21034 1.00431 0.96573 0.95699 1.21037 0.99328 0.93810 0.99467 1.20887 0.98339 1.00205 0.91589 1.20207 0.99731 0.95129 0.93486 0.91411 0.91507 0.91363 0.75766 0.95046 0.93212 0.93732 0.90825 0.94975 0.77635 0.89154 0.90075 0.90599 0.90165 0.86450 0.86095 0.85775 0.85205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 8.36 37.15 0.31 -1.50 16 2 C -0.04 -0.56 0.73 -155.78 -0.11 -0.68 16 3 C 0.53 9.31 6.47 -10.99 -0.07 9.24 16 4 O -0.55 -11.14 15.13 5.56 0.08 -11.06 16 5 N -0.69 -12.23 4.17 -51.62 -0.22 -12.44 16 6 C 0.14 2.60 3.31 -65.67 -0.22 2.38 16 7 H 0.09 1.70 7.54 -51.93 -0.39 1.31 16 8 C 0.12 2.58 6.95 -2.42 -0.02 2.56 16 9 N -0.60 -14.52 3.39 -169.94 -0.58 -15.10 16 10 C -0.23 -6.11 10.26 -15.06 -0.15 -6.27 16 11 H 0.08 2.06 7.84 -52.48 -0.41 1.65 16 12 C -0.01 -0.17 5.45 -17.43 -0.09 -0.26 16 13 N -0.92 -25.64 10.45 55.49 0.58 -25.06 16 14 Si 0.91 21.56 29.56 -169.99 -5.02 16.54 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 C 0.14 3.17 5.21 -3.07 -0.02 3.16 16 19 C 0.07 1.17 4.11 -24.90 -0.10 1.07 16 20 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 21 O -0.56 -8.79 12.69 -35.23 -0.45 -9.24 16 22 C -0.10 -1.28 5.86 -25.32 -0.15 -1.43 16 23 C -0.08 -0.86 6.76 -26.85 -0.18 -1.04 16 24 C -0.09 -1.13 6.14 -104.21 -0.64 -1.77 16 25 C -0.11 -1.27 10.04 -39.54 -0.40 -1.67 16 26 C -0.12 -1.31 10.05 -39.63 -0.40 -1.70 16 27 C -0.12 -1.44 10.05 -39.62 -0.40 -1.84 16 28 C -0.09 -1.30 9.52 -39.53 -0.38 -1.67 16 29 C -0.09 -1.20 4.91 -104.20 -0.51 -1.71 16 30 H 0.07 1.00 7.50 -51.93 -0.39 0.61 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.41 7.29 6.01 -40.82 -0.25 7.04 16 34 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 37 H 0.07 1.82 6.80 -51.93 -0.35 1.47 16 38 H 0.03 0.79 7.97 -51.93 -0.41 0.37 16 39 H 0.38 4.54 9.11 45.56 0.42 4.95 16 40 H 0.09 1.29 7.02 -51.93 -0.36 0.92 16 41 H 0.08 0.91 7.90 -51.93 -0.41 0.50 16 42 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 45 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 46 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 47 H 0.13 1.94 6.12 -52.49 -0.32 1.62 16 LS Contribution 374.17 15.07 5.64 5.64 Total: -1.00 -31.22 374.17 -9.74 -40.95 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -6.25 Total: 12.88 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -3.53 Total: -3.12 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: -0.21 Total: -52.60 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.36 Total: -20.29 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.22 -9.74 -40.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084108493.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.917 kcal (2) G-P(sol) polarization free energy of solvation -31.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds