Wall clock time and date at job start Tue Mar 31 2020 05:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 110.26916 * 2 1 4 4 O 1.21282 * 119.99905 * 237.92723 * 3 2 1 5 5 N 1.34777 * 120.00056 * 57.92744 * 3 2 1 6 6 C 1.46496 * 119.99888 * 179.97438 * 5 3 2 7 7 H 1.09000 * 110.64363 * 36.69085 * 6 5 3 8 8 C 1.54330 * 110.72036 * 273.54758 * 6 5 3 9 9 N 1.47022 * 107.26876 * 219.44746 * 8 6 5 10 10 C 1.36941 * 125.64503 * 178.97797 * 9 8 6 11 11 H 1.07995 * 120.00063 * 359.97438 * 10 9 8 12 12 C 1.38811 * 119.99686 * 179.97438 * 10 9 8 13 13 N 1.31617 * 120.00218 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99896 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47119 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47366 * 119.99855 * 14 12 10 17 17 H 1.48500 * 109.46827 * 239.99763 * 14 12 10 18 18 C 1.47419 * 108.70462 * 358.93597 * 9 8 6 19 19 C 1.54917 * 104.83251 * 24.13333 * 18 9 8 20 20 H 1.09002 * 111.00348 * 204.91418 * 19 18 9 21 21 O 1.42900 * 111.00222 * 81.06249 * 19 18 9 22 22 C 1.54347 * 110.30128 * 237.92944 * 2 1 3 23 23 C 1.54348 * 102.39267 * 267.31962 * 22 2 1 24 24 C 1.51375 * 105.16468 * 333.65127 * 23 22 2 25 25 C 1.38500 * 130.38295 * 197.19049 * 24 23 22 26 26 C 1.38106 * 120.21229 * 180.02562 * 25 24 23 27 27 C 1.38254 * 119.93478 * 359.97438 * 26 25 24 28 28 C 1.38110 * 119.93455 * 0.02562 * 27 26 25 29 29 C 1.38210 * 109.76083 * 17.19821 * 24 23 22 30 30 H 1.08997 * 109.47164 * 182.07206 * 1 2 3 31 31 H 1.09006 * 109.46412 * 302.07204 * 1 2 3 32 32 H 1.09004 * 109.47140 * 62.06961 * 1 2 3 33 33 H 0.96993 * 119.99763 * 0.02562 * 5 3 2 34 34 H 1.09004 * 109.88178 * 338.85871 * 8 6 5 35 35 H 1.08991 * 109.88282 * 100.02862 * 8 6 5 36 36 H 0.97000 * 120.00429 * 180.02562 * 13 12 10 37 37 H 1.09005 * 110.36562 * 142.96944 * 18 9 8 38 38 H 1.08998 * 110.37012 * 265.18235 * 18 9 8 39 39 H 0.96697 * 113.99911 * 67.80591 * 21 19 18 40 40 H 1.08999 * 110.82422 * 25.54312 * 22 2 1 41 41 H 1.08999 * 110.82732 * 149.09591 * 22 2 1 42 42 H 1.08993 * 110.30959 * 92.57325 * 23 22 2 43 43 H 1.09004 * 110.30351 * 214.73315 * 23 22 2 44 44 H 1.07997 * 119.89649 * 0.02562 * 25 24 23 45 45 H 1.07995 * 120.03638 * 179.97438 * 26 25 24 46 46 H 1.08000 * 120.03931 * 180.02562 * 27 26 25 47 47 H 1.07999 * 119.88893 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0521 1.4137 0.0000 4 8 2.7854 1.7893 -0.8900 5 7 1.7042 2.2606 0.9891 6 6 2.2121 3.6347 0.9893 7 1 2.2686 4.0237 -0.0273 8 6 3.5909 3.7070 1.6790 9 7 3.6165 4.9430 2.4746 10 6 4.6581 5.3679 3.2557 11 1 5.5586 4.7757 3.3236 12 6 4.5563 6.5597 3.9599 13 7 3.4590 7.2817 3.8767 14 14 5.9773 7.1397 5.0248 15 1 7.0871 6.1560 4.9479 16 1 6.4519 8.4608 4.5404 17 1 5.5224 7.2631 6.4329 18 6 2.3358 5.6498 2.2916 19 6 1.3289 4.5462 1.8817 20 1 0.4999 4.9658 1.3118 21 8 0.8531 3.8360 3.0268 22 6 2.0655 -0.7686 -1.2267 23 6 2.2466 -2.1966 -0.6697 24 6 2.4692 -2.0166 0.8168 25 6 2.9908 -2.8884 1.7581 26 6 3.1002 -2.5008 3.0791 27 6 2.6883 -1.2384 3.4640 28 6 2.1679 -0.3676 2.5267 29 6 2.0573 -0.7547 1.2015 30 1 -0.3633 -1.0270 0.0372 31 1 -0.3632 0.5457 0.8709 32 1 -0.3633 0.4814 -0.9080 33 1 1.1180 1.9600 1.7010 34 1 3.7250 2.8437 2.3309 35 1 4.3802 3.7331 0.9279 36 1 3.3879 8.1148 4.3685 37 1 2.0249 6.1193 3.2249 38 1 2.4242 6.3970 1.5030 39 1 0.2964 4.3651 3.6144 40 1 1.3379 -0.7587 -2.0381 41 1 3.0198 -0.3572 -1.5555 42 1 1.3494 -2.7891 -0.8486 43 1 3.1134 -2.6739 -1.1268 44 1 3.3131 -3.8746 1.4581 45 1 3.5070 -3.1830 3.8108 46 1 2.7735 -0.9333 4.4965 47 1 1.8468 0.6185 2.8281 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084108494.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:11 Heat of formation + Delta-G solvation = -29.114223 kcal Electronic energy + Delta-G solvation = -29353.613097 eV Core-core repulsion = 25501.778838 eV Total energy + Delta-G solvation = -3851.834259 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.05246 -39.11846 -37.83649 -35.88902 -34.73051 -34.07684 -32.32969 -31.38090 -29.90355 -28.88956 -28.39199 -26.96002 -25.50806 -24.45370 -22.77181 -22.08924 -21.07501 -20.58943 -19.81018 -19.35993 -17.47958 -16.95987 -16.66248 -16.13166 -15.67896 -15.26660 -15.06625 -14.87223 -14.54682 -14.40872 -14.09684 -13.69431 -13.57105 -13.14318 -13.03594 -12.93276 -12.71579 -12.61203 -12.43985 -12.31939 -11.77046 -11.72374 -11.49608 -11.30981 -11.19200 -11.06911 -10.89860 -10.86101 -10.79638 -10.58220 -10.32929 -10.02232 -9.83927 -9.61002 -9.23084 -8.85320 -8.69977 -8.64721 -8.59480 -6.83925 -5.69063 -3.08486 1.25474 1.34044 2.83762 3.35352 3.39593 3.45478 3.48004 3.71774 4.21041 4.33824 4.48138 4.58551 4.73853 4.83331 4.94457 5.00880 5.06227 5.12422 5.32075 5.35980 5.37667 5.43050 5.47348 5.48129 5.50016 5.68688 5.70050 5.74153 5.83661 5.86942 5.93335 5.94559 6.06693 6.10288 6.16511 6.29016 6.38331 6.48848 6.55683 6.58915 6.73298 6.92935 6.97385 7.26214 7.57290 7.72070 7.84003 8.10998 8.31464 8.48506 9.18958 9.79905 10.43324 11.36207 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.015566 B = 0.003533 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.398459 B = 7923.986029 C = 8700.906140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.039 4.039 3 C 0.523 3.477 4 O -0.541 6.541 5 N -0.705 5.705 6 C 0.142 3.858 7 H 0.099 0.901 8 C 0.132 3.868 9 N -0.596 5.596 10 C -0.214 4.214 11 H 0.078 0.922 12 C -0.013 4.013 13 N -0.927 5.927 14 Si 0.915 3.085 15 H -0.280 1.280 16 H -0.291 1.291 17 H -0.291 1.291 18 C 0.127 3.873 19 C 0.068 3.932 20 H 0.058 0.942 21 O -0.562 6.562 22 C -0.102 4.102 23 C -0.081 4.081 24 C -0.090 4.090 25 C -0.112 4.112 26 C -0.117 4.117 27 C -0.117 4.117 28 C -0.095 4.095 29 C -0.088 4.088 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.406 0.594 34 H 0.029 0.971 35 H 0.027 0.973 36 H 0.251 0.749 37 H 0.115 0.885 38 H 0.022 0.978 39 H 0.379 0.621 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.119 0.881 45 H 0.123 0.877 46 H 0.126 0.874 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.401 -18.502 -5.536 21.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.043 4.043 3 C 0.308 3.692 4 O -0.418 6.418 5 N -0.356 5.356 6 C 0.036 3.964 7 H 0.117 0.883 8 C 0.005 3.995 9 N -0.322 5.322 10 C -0.343 4.343 11 H 0.096 0.904 12 C -0.207 4.207 13 N -0.577 5.577 14 Si 0.746 3.254 15 H -0.205 1.205 16 H -0.218 1.218 17 H -0.218 1.218 18 C 0.001 3.999 19 C 0.008 3.992 20 H 0.076 0.924 21 O -0.368 6.368 22 C -0.140 4.140 23 C -0.118 4.118 24 C -0.090 4.090 25 C -0.130 4.130 26 C -0.135 4.135 27 C -0.135 4.135 28 C -0.113 4.113 29 C -0.088 4.088 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.242 0.758 34 H 0.047 0.953 35 H 0.045 0.955 36 H 0.062 0.938 37 H 0.133 0.867 38 H 0.040 0.960 39 H 0.227 0.773 40 H 0.099 0.901 41 H 0.110 0.890 42 H 0.098 0.902 43 H 0.096 0.904 44 H 0.137 0.863 45 H 0.141 0.859 46 H 0.144 0.856 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.460 -18.527 -6.314 21.324 hybrid contribution 0.250 0.781 1.255 1.500 sum -8.209 -17.746 -5.059 20.197 Atomic orbital electron populations 1.21794 0.91443 1.02959 1.02808 1.20348 0.97112 0.92195 0.94613 1.20324 0.80507 0.86652 0.81695 1.90675 1.36635 1.77442 1.37013 1.45933 1.50695 1.12167 1.26842 1.22151 0.94648 0.80453 0.99105 0.88332 1.21583 0.93581 0.90830 0.93458 1.44292 1.14813 1.20530 1.52596 1.19151 0.93460 1.03256 1.18393 0.90407 1.24741 0.97976 0.97202 1.00812 1.69727 1.26039 1.15497 1.46392 0.85972 0.81185 0.78335 0.79891 1.20533 1.21759 1.21767 1.22592 0.84105 0.90674 1.02482 1.23566 0.95645 0.93696 0.86338 0.92389 1.86226 1.71408 1.41881 1.37253 1.22335 1.03183 0.93142 0.95295 1.21077 1.02164 0.97710 0.90851 1.20533 0.98410 0.94261 0.95778 1.20578 1.00537 0.99247 0.92637 1.21063 1.00066 0.96566 0.95764 1.21078 0.98958 0.93798 0.99640 1.20814 0.98922 0.99930 0.91679 1.20162 1.00173 0.95180 0.93324 0.91304 0.91788 0.91482 0.75752 0.95297 0.95512 0.93818 0.86723 0.96011 0.77314 0.90071 0.88968 0.90163 0.90447 0.86309 0.85914 0.85592 0.85708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.30 8.37 37.16 0.31 -0.99 16 2 C -0.04 -0.49 0.73 -155.78 -0.11 -0.60 16 3 C 0.52 8.44 6.47 -10.98 -0.07 8.37 16 4 O -0.54 -10.56 15.21 5.56 0.08 -10.48 16 5 N -0.70 -11.28 4.43 -52.03 -0.23 -11.51 16 6 C 0.14 2.67 3.12 -66.10 -0.21 2.46 16 7 H 0.10 1.91 7.69 -51.93 -0.40 1.51 16 8 C 0.13 3.02 6.99 -3.06 -0.02 3.00 16 9 N -0.60 -15.47 3.39 -170.07 -0.58 -16.05 16 10 C -0.21 -6.07 10.27 -15.06 -0.15 -6.23 16 11 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 12 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 13 N -0.93 -26.49 10.09 55.49 0.56 -25.93 16 14 Si 0.92 22.23 29.55 -169.99 -5.02 17.21 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 18 C 0.13 2.98 5.62 -2.53 -0.01 2.96 16 19 C 0.07 1.23 4.28 -24.58 -0.11 1.13 16 20 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 21 O -0.56 -9.38 12.23 -35.23 -0.43 -9.81 16 22 C -0.10 -1.14 5.87 -25.32 -0.15 -1.29 16 23 C -0.08 -0.77 6.76 -26.85 -0.18 -0.95 16 24 C -0.09 -1.04 6.14 -104.20 -0.64 -1.68 16 25 C -0.11 -1.19 10.04 -39.53 -0.40 -1.59 16 26 C -0.12 -1.25 10.05 -39.62 -0.40 -1.65 16 27 C -0.12 -1.40 10.05 -39.62 -0.40 -1.80 16 28 C -0.10 -1.27 9.52 -39.53 -0.38 -1.65 16 29 C -0.09 -1.14 4.91 -104.21 -0.51 -1.65 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.62 7.46 -51.93 -0.39 0.23 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.41 5.94 5.16 -40.82 -0.21 5.73 16 34 H 0.03 0.68 8.03 -51.93 -0.42 0.27 16 35 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 37 H 0.12 2.95 5.88 -51.93 -0.31 2.65 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.38 5.08 9.12 45.56 0.42 5.49 16 40 H 0.08 0.76 7.90 -51.93 -0.41 0.35 16 41 H 0.09 1.24 7.02 -51.93 -0.36 0.88 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 45 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 46 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 47 H 0.13 1.74 6.12 -52.49 -0.32 1.42 16 LS Contribution 372.59 15.07 5.61 5.61 Total: -1.00 -32.90 372.59 -9.70 -42.60 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -6.17 Total: 10.97 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -3.52 Total: -2.61 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: -0.25 Total: -53.49 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.35 Total: -20.29 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.90 -9.70 -42.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084108494.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.482 kcal (2) G-P(sol) polarization free energy of solvation -32.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds