Wall clock time and date at job start Tue Mar 31 2020 05:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38259 * 119.99800 * 2 1 4 4 C 1.38208 * 119.99515 * 179.97438 * 3 2 1 5 5 C 1.38255 * 120.00431 * 359.97438 * 4 3 2 6 6 C 1.38207 * 119.99784 * 0.09659 * 5 4 3 7 7 C 1.38213 * 119.99837 * 180.02562 * 2 1 3 8 8 C 1.50694 * 120.00083 * 0.02562 * 7 2 1 9 9 C 1.50702 * 115.55133 * 294.15328 * 8 7 2 10 10 O 1.21283 * 119.99405 * 120.44483 * 9 8 7 11 11 N 1.34769 * 120.00360 * 300.45254 * 9 8 7 12 12 C 1.46501 * 120.00372 * 174.58020 * 11 9 8 13 13 H 1.09002 * 110.63584 * 34.29968 * 12 11 9 14 14 C 1.54325 * 110.72183 * 271.15927 * 12 11 9 15 15 N 1.47026 * 107.26837 * 219.44231 * 14 12 11 16 16 C 1.36931 * 125.64588 * 178.97534 * 15 14 12 17 17 H 1.08007 * 120.00131 * 359.97438 * 16 15 14 18 18 C 1.38806 * 120.00091 * 179.97438 * 16 15 14 19 19 N 1.31623 * 119.99971 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 120.00191 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47044 * 90.00006 * 20 18 16 22 22 H 1.48495 * 109.46982 * 209.99923 * 20 18 16 23 23 H 1.48500 * 109.47054 * 330.00402 * 20 18 16 24 24 C 1.47423 * 108.70337 * 358.93882 * 15 14 12 25 25 C 1.55126 * 104.94453 * 24.00269 * 24 15 14 26 26 H 1.08998 * 111.16247 * 205.13040 * 25 24 15 27 27 O 1.42900 * 110.93082 * 81.21606 * 25 24 15 28 28 C 1.53003 * 117.49895 * 148.48791 * 8 7 2 29 29 C 1.53003 * 117.50135 * 79.82965 * 8 7 2 30 30 H 1.09003 * 109.47040 * 93.78790 * 1 2 3 31 31 H 1.09001 * 109.47065 * 213.78523 * 1 2 3 32 32 H 1.08998 * 109.46816 * 333.78859 * 1 2 3 33 33 H 1.08001 * 119.99941 * 359.97438 * 3 2 1 34 34 H 1.08006 * 119.99783 * 179.71969 * 4 3 2 35 35 H 1.08004 * 120.00171 * 179.97438 * 5 4 3 36 36 H 1.08005 * 120.00052 * 179.97438 * 6 5 4 37 37 H 0.96997 * 119.99723 * 354.58404 * 11 9 8 38 38 H 1.08997 * 109.88212 * 338.85812 * 14 12 11 39 39 H 1.09001 * 109.88109 * 100.02408 * 14 12 11 40 40 H 0.97001 * 120.00282 * 180.02562 * 19 18 16 41 41 H 1.09004 * 110.36460 * 142.97074 * 24 15 14 42 42 H 1.08999 * 110.36627 * 265.18348 * 24 15 14 43 43 H 0.96698 * 114.00630 * 67.95917 * 27 25 24 44 44 H 1.08996 * 117.49712 * 0.02562 * 28 8 7 45 45 H 1.09000 * 117.49789 * 145.02031 * 28 8 7 46 46 H 1.08999 * 117.49941 * 214.98018 * 29 8 7 47 47 H 1.08994 * 117.49494 * 359.97438 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0016 6 6 3.5806 -1.1969 0.0001 7 6 2.1981 -1.1970 -0.0005 8 6 1.4446 -2.5020 -0.0017 9 6 0.6373 -2.7876 1.2384 10 8 -0.5616 -2.9518 1.1569 11 7 1.2475 -2.8604 2.4378 12 6 0.4505 -3.0194 3.6568 13 1 -0.4295 -3.6328 3.4631 14 6 0.0429 -1.6441 4.2260 15 7 0.1507 -1.7283 5.6899 16 6 -0.1050 -0.7099 6.5687 17 1 -0.4150 0.2567 6.1999 18 6 0.0342 -0.9197 7.9338 19 7 0.4125 -2.0975 8.3833 20 14 -0.3138 0.4699 9.1328 21 1 -1.7456 0.4377 9.5255 22 1 0.5345 0.3058 10.3404 23 1 -0.0073 1.7707 8.4853 24 6 0.5786 -3.0911 6.0548 25 6 1.3067 -3.6321 4.7964 26 1 1.2790 -4.7213 4.7636 27 8 2.6522 -3.1541 4.7400 28 6 2.0936 -3.6919 -0.7116 29 6 0.8843 -2.9932 -1.3381 30 1 -0.3633 -0.0679 -1.0254 31 1 -0.3633 -0.8541 0.5715 32 1 -0.3633 0.9220 0.4539 33 1 1.6583 2.1327 -0.0004 34 1 4.1204 2.1327 -0.0040 35 1 5.3517 0.0000 0.0016 36 1 4.1206 -2.1322 0.0005 37 1 2.2144 -2.8074 2.4940 38 1 0.7145 -0.8730 3.8486 39 1 -0.9844 -1.4152 3.9424 40 1 0.5095 -2.2444 9.3373 41 1 1.2605 -3.0597 6.9047 42 1 -0.2872 -3.7113 6.2866 43 1 3.2254 -3.5096 5.4329 44 1 3.0658 -3.5308 -1.1774 45 1 1.9363 -4.6812 -0.2819 46 1 -0.0680 -3.5230 -1.3203 47 1 1.0604 -2.3721 -2.2163 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084120126.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:30 Heat of formation + Delta-G solvation = -2.282575 kcal Electronic energy + Delta-G solvation = -29281.708611 eV Core-core repulsion = 25431.037859 eV Total energy + Delta-G solvation = -3850.670751 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.67867 -39.05799 -37.93579 -36.27001 -34.71604 -33.92601 -32.75933 -31.64193 -30.69244 -28.59629 -27.17953 -26.84369 -25.06169 -24.06448 -22.81613 -21.93630 -21.33818 -20.57445 -19.89679 -19.33616 -17.64102 -17.08714 -16.70046 -16.20515 -15.46748 -15.43239 -15.08815 -14.88497 -14.61867 -14.47775 -14.09196 -13.82923 -13.46814 -13.19652 -13.10821 -12.96087 -12.70135 -12.54144 -12.13452 -12.05817 -11.78196 -11.67227 -11.37312 -11.26286 -11.22848 -11.06836 -10.86213 -10.70145 -10.56058 -10.45534 -10.34199 -10.01894 -9.83023 -9.71862 -9.22819 -8.82391 -8.69431 -8.65025 -8.55229 -6.83896 -5.68559 -3.08178 1.25660 1.35418 2.68229 3.29763 3.40112 3.45077 3.47056 3.53437 3.79490 4.39507 4.47891 4.59130 4.68766 4.80282 4.83221 4.92799 4.99586 5.03317 5.30051 5.34594 5.38588 5.42035 5.49144 5.51659 5.55427 5.70436 5.72095 5.74210 5.74521 5.87613 5.93661 5.96685 5.99523 6.06730 6.27621 6.29934 6.42001 6.45828 6.58245 6.63202 6.69802 6.95372 6.97500 7.26555 7.57111 7.72464 7.85404 8.13312 8.32337 8.46985 9.19095 9.80101 10.43592 11.36609 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013631 B = 0.003728 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.690050 B = 7508.059793 C = 8252.443890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.062 4.062 3 C -0.120 4.120 4 C -0.114 4.114 5 C -0.127 4.127 6 C -0.105 4.105 7 C -0.050 4.050 8 C -0.118 4.118 9 C 0.553 3.447 10 O -0.541 6.541 11 N -0.698 5.698 12 C 0.141 3.859 13 H 0.101 0.899 14 C 0.133 3.867 15 N -0.595 5.595 16 C -0.215 4.215 17 H 0.077 0.923 18 C -0.012 4.012 19 N -0.927 5.927 20 Si 0.916 3.084 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.128 3.872 25 C 0.067 3.933 26 H 0.058 0.942 27 O -0.560 6.560 28 C -0.156 4.156 29 C -0.135 4.135 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.409 0.591 38 H 0.030 0.970 39 H 0.026 0.974 40 H 0.252 0.748 41 H 0.115 0.885 42 H 0.022 0.978 43 H 0.379 0.621 44 H 0.105 0.895 45 H 0.101 0.899 46 H 0.108 0.892 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.918 -1.796 -18.936 20.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.062 4.062 3 C -0.138 4.138 4 C -0.132 4.132 5 C -0.145 4.145 6 C -0.123 4.123 7 C -0.051 4.051 8 C -0.121 4.121 9 C 0.339 3.661 10 O -0.419 6.419 11 N -0.348 5.348 12 C 0.036 3.964 13 H 0.118 0.882 14 C 0.006 3.994 15 N -0.322 5.322 16 C -0.343 4.343 17 H 0.095 0.905 18 C -0.207 4.207 19 N -0.577 5.577 20 Si 0.746 3.254 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.002 3.998 25 C 0.007 3.993 26 H 0.076 0.924 27 O -0.366 6.366 28 C -0.193 4.193 29 C -0.172 4.172 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.245 0.755 38 H 0.048 0.952 39 H 0.044 0.956 40 H 0.062 0.938 41 H 0.133 0.867 42 H 0.040 0.960 43 H 0.226 0.774 44 H 0.123 0.877 45 H 0.120 0.880 46 H 0.126 0.874 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.811 -1.516 -19.252 20.477 hybrid contribution 0.480 0.546 1.290 1.481 sum 7.292 -0.970 -17.962 19.409 Atomic orbital electron populations 1.20999 0.90876 1.03998 1.02579 1.19802 0.96388 0.92278 0.97766 1.21048 0.94288 0.97426 1.01073 1.21143 0.94283 0.98097 0.99708 1.21059 0.99762 0.92369 1.01273 1.20976 0.93124 0.98335 0.99854 1.18607 0.92737 0.91403 1.02316 1.20046 1.03772 0.94529 0.93743 1.19283 0.87288 0.75984 0.83589 1.90687 1.14587 1.50323 1.86333 1.45738 1.11305 1.72621 1.05104 1.22176 0.93841 0.98312 0.82098 0.88155 1.21580 0.97784 0.93911 0.86172 1.44262 1.79597 1.09182 0.99112 1.19093 1.37784 0.90732 0.86734 0.90466 1.24741 1.02096 0.97221 0.96622 1.69720 1.54218 1.21030 1.12688 0.86044 0.77640 0.81054 0.80629 1.21625 1.21655 1.20706 1.22629 0.97764 0.85040 0.94373 1.23613 0.82844 0.95451 0.97402 0.92386 1.86255 1.20623 1.73641 1.56065 1.23124 0.98234 0.95530 1.02396 1.23017 0.98500 1.02046 0.93637 0.91195 0.89813 0.91727 0.86006 0.86151 0.86056 0.85886 0.75526 0.95238 0.95598 0.93757 0.86716 0.96043 0.77399 0.87689 0.88044 0.87390 0.88015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.71 9.53 36.01 0.34 -1.37 16 2 C -0.06 -0.82 5.86 -104.62 -0.61 -1.44 16 3 C -0.12 -1.45 9.69 -39.58 -0.38 -1.83 16 4 C -0.11 -1.25 10.05 -39.59 -0.40 -1.64 16 5 C -0.13 -1.34 10.05 -39.59 -0.40 -1.73 16 6 C -0.10 -1.16 9.22 -39.59 -0.37 -1.53 16 7 C -0.05 -0.63 5.11 -104.63 -0.53 -1.17 16 8 C -0.12 -1.46 1.35 -156.81 -0.21 -1.67 16 9 C 0.55 8.82 5.64 -10.99 -0.06 8.75 16 10 O -0.54 -10.20 14.99 5.56 0.08 -10.12 16 11 N -0.70 -11.43 5.07 -52.03 -0.26 -11.69 16 12 C 0.14 2.68 3.20 -66.10 -0.21 2.47 16 13 H 0.10 1.95 7.55 -51.93 -0.39 1.56 16 14 C 0.13 3.01 7.00 -3.06 -0.02 2.99 16 15 N -0.60 -15.51 3.40 -169.93 -0.58 -16.09 16 16 C -0.22 -6.10 10.27 -15.06 -0.15 -6.26 16 17 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 18 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 19 N -0.93 -26.59 10.09 55.49 0.56 -26.03 16 20 Si 0.92 22.25 29.55 -169.99 -5.02 17.22 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 C 0.13 3.01 5.62 -2.41 -0.01 3.00 16 25 C 0.07 1.24 4.31 -24.47 -0.11 1.14 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 O -0.56 -9.71 12.23 -35.23 -0.43 -10.14 16 28 C -0.16 -1.49 9.43 -26.69 -0.25 -1.74 16 29 C -0.13 -1.42 9.75 -26.69 -0.26 -1.68 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 1.34 4.59 -51.93 -0.24 1.10 16 32 H 0.06 0.82 8.06 -51.93 -0.42 0.40 16 33 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 34 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 35 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 36 H 0.12 1.12 7.04 -52.48 -0.37 0.75 16 37 H 0.41 6.36 7.58 -40.82 -0.31 6.05 16 38 H 0.03 0.70 8.03 -51.93 -0.42 0.29 16 39 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.12 2.98 5.87 -51.93 -0.31 2.68 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.38 5.27 9.12 45.56 0.42 5.69 16 44 H 0.10 0.81 7.15 -51.93 -0.37 0.44 16 45 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 46 H 0.11 1.21 7.89 -51.93 -0.41 0.81 16 47 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 380.26 15.07 5.73 5.73 Total: -1.00 -32.55 380.26 -9.83 -42.38 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -6.17 Total: 12.87 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -3.74 Total: -4.14 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: -0.28 Total: -53.81 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.35 Total: -20.25 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.55 -9.83 -42.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084120126.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.094 kcal (2) G-P(sol) polarization free energy of solvation -32.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds