Wall clock time and date at job start Tue Mar 31 2020 06:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86802 * 120.00399 * 2 1 4 4 H 1.48500 * 109.46850 * 264.99642 * 3 2 1 5 5 H 1.48497 * 109.46886 * 24.99422 * 3 2 1 6 6 H 1.48494 * 109.47088 * 144.99560 * 3 2 1 7 7 C 1.38820 * 119.99631 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99732 * 189.89034 * 7 2 1 9 9 N 1.36929 * 120.00101 * 9.89729 * 7 2 1 10 10 C 1.46620 * 119.88906 * 207.09667 * 9 7 2 11 11 C 1.53108 * 108.00678 * 237.32166 * 10 9 7 12 12 C 1.53012 * 109.44870 * 301.02678 * 11 10 9 13 13 H 1.09005 * 113.42344 * 274.22837 * 12 11 10 14 14 C 1.54652 * 110.83615 * 143.88561 * 12 11 10 15 15 N 1.47807 * 85.79297 * 270.23146 * 14 12 11 16 16 C 1.34780 * 135.01363 * 153.77339 * 15 14 12 17 17 O 1.21285 * 119.99617 * 174.99096 * 16 15 14 18 18 C 1.50693 * 119.99901 * 354.99402 * 16 15 14 19 19 H 1.09006 * 109.71679 * 335.77977 * 18 16 15 20 20 C 1.53387 * 109.71708 * 215.17648 * 18 16 15 21 21 C 1.53029 * 109.72681 * 189.76840 * 20 18 16 22 22 C 1.53369 * 109.75342 * 71.70414 * 21 20 18 23 23 C 1.50951 * 108.20287 * 309.33731 * 22 21 20 24 24 N 1.30126 * 128.28724 * 196.75164 * 23 22 21 25 25 N 1.40311 * 108.12676 * 179.89448 * 24 23 22 26 26 H 0.96997 * 126.00596 * 180.02562 * 25 24 23 27 27 C 1.35200 * 107.99192 * 0.02562 * 25 24 23 28 28 C 1.34569 * 107.61811 * 0.05672 * 27 25 24 29 29 C 1.46822 * 89.97449 * 333.80400 * 15 14 12 30 30 H 1.09000 * 111.56492 * 274.48361 * 29 15 14 31 31 C 1.45678 * 119.89203 * 27.08786 * 9 7 2 32 32 H 0.97007 * 119.99770 * 359.97438 * 1 2 3 33 33 H 1.08998 * 109.75646 * 117.70007 * 10 9 7 34 34 H 1.09002 * 109.75535 * 356.94757 * 10 9 7 35 35 H 1.09007 * 109.47112 * 61.01497 * 11 10 9 36 36 H 1.08996 * 109.47706 * 181.02978 * 11 10 9 37 37 H 1.09000 * 113.82061 * 24.44472 * 14 12 11 38 38 H 1.08996 * 113.81784 * 156.01345 * 14 12 11 39 39 H 1.09000 * 109.42799 * 309.84414 * 20 18 16 40 40 H 1.08999 * 109.42928 * 69.74172 * 20 18 16 41 41 H 1.08998 * 109.42065 * 191.78810 * 21 20 18 42 42 H 1.08998 * 109.42179 * 311.67257 * 21 20 18 43 43 H 1.08996 * 109.71901 * 69.01648 * 22 21 20 44 44 H 1.09002 * 109.71282 * 189.66617 * 22 21 20 45 45 H 1.07999 * 126.19080 * 180.02562 * 27 25 24 46 46 H 1.08995 * 108.71531 * 19.76393 * 31 9 7 47 47 H 1.09006 * 108.71824 * 261.73988 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6035 1.9852 -1.3948 5 1 1.3988 2.6808 0.5916 6 1 3.4908 1.4729 0.8031 7 6 2.0101 -1.2023 -0.0005 8 1 3.0781 -1.2093 0.1601 9 7 1.3407 -2.3792 -0.2049 10 6 1.8701 -3.6273 0.3535 11 6 2.0768 -4.6119 -0.8007 12 6 0.7433 -4.8500 -1.5123 13 1 0.1400 -5.6325 -1.0518 14 6 0.9546 -5.0175 -3.0351 15 7 0.7835 -3.5513 -3.1100 16 6 1.1977 -2.5851 -3.9535 17 8 0.8151 -1.4440 -3.8032 18 6 2.1360 -2.9226 -5.0833 19 1 2.6987 -3.8232 -4.8374 20 6 3.1037 -1.7560 -5.3184 21 6 3.8906 -1.9898 -6.6099 22 6 2.9684 -1.7997 -7.8205 23 6 1.7265 -2.6294 -7.6021 24 7 0.8375 -2.9964 -8.4787 25 7 -0.1380 -3.7586 -7.8184 26 1 -0.9197 -4.1619 -8.2272 27 6 0.2029 -3.8321 -6.5122 28 6 1.3476 -3.1433 -6.3506 29 6 -0.0241 -3.5836 -1.8843 30 1 -1.0711 -3.7968 -2.0998 31 6 0.1049 -2.3870 -0.9761 32 1 -0.4850 0.8401 0.0004 33 1 1.1593 -4.0417 1.0683 34 1 2.8219 -3.4349 0.8485 35 1 2.7967 -4.1981 -1.5068 36 1 2.4535 -5.5568 -0.4092 37 1 1.9539 -5.3585 -3.3060 38 1 0.1625 -5.5791 -3.5303 39 1 2.5388 -0.8275 -5.4012 40 1 3.7968 -1.6852 -4.4802 41 1 4.7143 -1.2782 -6.6663 42 1 4.2877 -3.0049 -6.6136 43 1 2.6965 -0.7483 -7.9141 44 1 3.4772 -2.1306 -8.7259 45 1 -0.3447 -4.3495 -5.7383 46 1 0.0651 -1.4820 -1.5823 47 1 -0.7385 -2.3796 -0.2856 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084346012.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:41 Heat of formation + Delta-G solvation = 98.466853 kcal Electronic energy + Delta-G solvation = -30087.226072 eV Core-core repulsion = 26273.216895 eV Total energy + Delta-G solvation = -3814.009177 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.60128 -40.27895 -37.93485 -36.00077 -35.13867 -32.39450 -32.03097 -30.62899 -30.10462 -29.00702 -28.37291 -26.89571 -24.79424 -23.84802 -22.95224 -21.73155 -21.39017 -20.98691 -19.47300 -18.75759 -17.80734 -17.66927 -16.86594 -15.92938 -15.67840 -15.39769 -15.09391 -14.74150 -14.31872 -14.16539 -13.73998 -13.60998 -13.45528 -13.22772 -13.00697 -12.85141 -12.63583 -12.35527 -12.21862 -11.95670 -11.85553 -11.47543 -11.24686 -11.06151 -10.90782 -10.78024 -10.67137 -10.62041 -10.43347 -10.35314 -10.16857 -9.83388 -9.79994 -9.58897 -9.42578 -8.94949 -8.41535 -8.23081 -8.03725 -6.54664 -5.62718 -3.08161 1.83841 2.63828 2.77702 3.30094 3.38902 3.49040 3.54342 3.56278 4.39970 4.61338 4.67174 4.73507 4.81267 4.93422 5.05376 5.20624 5.29660 5.34687 5.41592 5.48565 5.50631 5.56259 5.58794 5.59871 5.66051 5.74160 5.79011 5.89035 5.92933 6.02651 6.12718 6.16230 6.22499 6.26026 6.35883 6.41124 6.54399 6.57673 6.59243 6.64591 6.81219 7.02243 7.20634 7.55365 7.61352 7.82287 7.98032 8.38454 8.61392 8.88152 9.38687 10.01777 10.50703 11.44884 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.012624 B = 0.004746 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.456411 B = 5897.717769 C = 7032.972614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.011 3.989 3 Si 0.902 3.098 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.253 4.253 8 H 0.062 0.938 9 N -0.585 5.585 10 C 0.147 3.853 11 C -0.117 4.117 12 C -0.109 4.109 13 H 0.084 0.916 14 C 0.094 3.906 15 N -0.632 5.632 16 C 0.543 3.457 17 O -0.515 6.515 18 C -0.019 4.019 19 H 0.087 0.913 20 C -0.107 4.107 21 C -0.112 4.112 22 C -0.040 4.040 23 C 0.092 3.908 24 N -0.292 5.292 25 N -0.485 5.485 26 H 0.438 0.562 27 C 0.068 3.932 28 C -0.216 4.216 29 C 0.124 3.876 30 H 0.068 0.932 31 C 0.166 3.834 32 H 0.252 0.748 33 H 0.019 0.981 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.172 0.828 46 H 0.106 0.894 47 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.045 -13.364 -12.567 18.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.187 4.187 3 Si 0.732 3.268 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.383 4.383 8 H 0.080 0.920 9 N -0.308 5.308 10 C 0.021 3.979 11 C -0.156 4.156 12 C -0.129 4.129 13 H 0.102 0.898 14 C -0.030 4.030 15 N -0.369 5.369 16 C 0.331 3.669 17 O -0.389 6.389 18 C -0.041 4.041 19 H 0.105 0.895 20 C -0.144 4.144 21 C -0.150 4.150 22 C -0.079 4.079 23 C -0.077 4.077 24 N -0.114 5.114 25 N -0.193 5.193 26 H 0.282 0.718 27 C -0.077 4.077 28 C -0.227 4.227 29 C 0.020 3.980 30 H 0.086 0.914 31 C 0.040 3.960 32 H 0.062 0.938 33 H 0.037 0.963 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.104 0.896 44 H 0.100 0.900 45 H 0.189 0.811 46 H 0.124 0.876 47 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 2.423 -12.346 -13.827 18.695 hybrid contribution -0.093 0.353 0.565 0.672 sum 2.330 -11.994 -13.262 18.032 Atomic orbital electron populations 1.69974 1.05207 1.25260 1.54443 1.25010 0.95335 0.98116 1.00282 0.86322 0.78829 0.83865 0.77802 1.21266 1.21795 1.20693 1.19078 0.90577 0.83973 1.44672 0.92009 1.43458 1.26559 1.02793 1.57942 1.20747 0.97388 0.87406 0.92406 1.21859 0.94736 0.99243 0.99780 1.22856 0.98550 0.97503 0.93954 0.89784 1.23530 1.00925 0.82094 0.96402 1.49918 1.53529 1.06494 1.26919 1.19882 0.81452 0.84379 0.81163 1.90755 1.56738 1.19838 1.71544 1.19606 0.94726 1.00142 0.89642 0.89520 1.21484 0.97357 0.98168 0.97439 1.21563 0.97568 1.02344 0.93554 1.20174 0.90119 0.98422 0.99182 1.22335 0.96489 0.97900 0.90960 1.76964 1.00521 1.13340 1.20614 1.46237 1.22828 1.44112 1.06169 0.71828 1.22023 0.97263 1.00973 0.87481 1.19630 0.99488 1.08281 0.95350 1.22665 0.93581 0.97503 0.84245 0.91395 1.20121 0.88371 0.95213 0.92291 0.93775 0.96306 0.92603 0.92036 0.92819 0.90707 0.90862 0.90020 0.90810 0.90596 0.91574 0.89603 0.90049 0.81114 0.87624 0.95291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.48 10.80 55.49 0.60 -26.88 16 2 C 0.01 0.33 5.05 -17.43 -0.09 0.24 16 3 Si 0.90 23.12 29.57 -169.99 -5.03 18.10 16 4 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 5 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.25 -7.17 9.53 -15.06 -0.14 -7.31 16 8 H 0.06 1.72 7.83 -52.49 -0.41 1.31 16 9 N -0.58 -14.76 3.02 -175.07 -0.53 -15.29 16 10 C 0.15 2.98 6.47 -3.92 -0.03 2.96 16 11 C -0.12 -1.87 5.66 -26.67 -0.15 -2.02 16 12 C -0.11 -1.60 4.39 -89.97 -0.40 -1.99 16 13 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 14 C 0.09 1.16 7.79 -3.00 -0.02 1.14 16 15 N -0.63 -10.89 3.34 -173.99 -0.58 -11.47 16 16 C 0.54 10.46 6.63 -10.99 -0.07 10.39 16 17 O -0.51 -12.76 15.33 5.55 0.09 -12.68 16 18 C -0.02 -0.28 2.76 -92.64 -0.26 -0.54 16 19 H 0.09 1.15 7.53 -51.93 -0.39 0.76 16 20 C -0.11 -1.57 5.01 -26.52 -0.13 -1.70 16 21 C -0.11 -1.22 5.86 -26.53 -0.16 -1.38 16 22 C -0.04 -0.45 6.31 -27.57 -0.17 -0.62 16 23 C 0.09 1.28 7.10 -82.34 -0.58 0.70 16 24 N -0.29 -4.11 12.68 33.75 0.43 -3.68 16 25 N -0.49 -5.62 7.37 30.35 0.22 -5.39 16 26 H 0.44 3.48 8.96 -182.44 -1.64 1.84 16 27 C 0.07 0.85 11.50 -17.37 -0.20 0.65 16 28 C -0.22 -3.07 5.41 -104.98 -0.57 -3.64 16 29 C 0.12 2.31 4.22 -69.58 -0.29 2.02 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 31 C 0.17 4.10 4.61 -5.60 -0.03 4.08 16 32 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 1.12 7.90 -51.93 -0.41 0.71 16 35 H 0.06 1.07 7.69 -51.93 -0.40 0.67 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.82 7.64 -51.93 -0.40 0.42 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 1.41 7.49 -51.93 -0.39 1.02 16 40 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 43 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.17 1.78 8.06 -52.49 -0.42 1.36 16 46 H 0.11 3.09 4.93 -51.93 -0.26 2.84 16 47 H 0.03 0.78 7.95 -51.93 -0.41 0.37 16 LS Contribution 367.41 15.07 5.54 5.54 Total: -1.00 -36.02 367.41 -11.04 -47.05 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -8.48 Total: 1.73 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: -3.29 Total: 2.97 kcal Atomic # 7 Polarization: -62.85 SS G_CDS: 0.14 Total: -62.71 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.09 Total: -12.68 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.03 Total: 18.10 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.02 -11.04 -47.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084346012.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.521 kcal (2) G-P(sol) polarization free energy of solvation -36.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds