Wall clock time and date at job start Tue Mar 31 2020 06:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86802 * 120.00399 * 2 1 4 4 H 1.48500 * 109.46850 * 264.99642 * 3 2 1 5 5 H 1.48497 * 109.46886 * 24.99422 * 3 2 1 6 6 H 1.48494 * 109.47088 * 144.99560 * 3 2 1 7 7 C 1.38820 * 119.99631 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99732 * 189.89034 * 7 2 1 9 9 N 1.36929 * 120.00101 * 9.89729 * 7 2 1 10 10 C 1.46620 * 119.88906 * 207.09667 * 9 7 2 11 11 C 1.53108 * 108.00678 * 237.32166 * 10 9 7 12 12 C 1.53012 * 109.44870 * 301.02678 * 11 10 9 13 13 H 1.09005 * 113.42344 * 274.22837 * 12 11 10 14 14 C 1.54652 * 110.83615 * 143.88561 * 12 11 10 15 15 N 1.47807 * 85.79297 * 270.23146 * 14 12 11 16 16 C 1.34780 * 135.01363 * 153.77339 * 15 14 12 17 17 O 1.21285 * 119.99617 * 174.99096 * 16 15 14 18 18 C 1.50693 * 119.99901 * 354.99402 * 16 15 14 19 19 H 1.09006 * 109.71679 * 335.77977 * 18 16 15 20 20 C 1.53387 * 109.71708 * 215.17648 * 18 16 15 21 21 C 1.53029 * 109.72681 * 189.76840 * 20 18 16 22 22 C 1.53369 * 109.75342 * 71.70414 * 21 20 18 23 23 C 1.50951 * 108.20287 * 309.33731 * 22 21 20 24 24 N 1.30126 * 128.28724 * 196.75164 * 23 22 21 25 25 N 1.40311 * 108.12676 * 179.89448 * 24 23 22 26 26 H 0.96997 * 126.00596 * 180.02562 * 25 24 23 27 27 C 1.35200 * 107.99192 * 0.02562 * 25 24 23 28 28 C 1.34569 * 107.61811 * 0.05672 * 27 25 24 29 29 C 1.46822 * 89.97449 * 333.80400 * 15 14 12 30 30 H 1.09000 * 111.56492 * 274.48361 * 29 15 14 31 31 C 1.45678 * 119.89203 * 27.08786 * 9 7 2 32 32 H 0.97007 * 119.99770 * 359.97438 * 1 2 3 33 33 H 1.08998 * 109.75646 * 117.70007 * 10 9 7 34 34 H 1.09002 * 109.75535 * 356.94757 * 10 9 7 35 35 H 1.09007 * 109.47112 * 61.01497 * 11 10 9 36 36 H 1.08996 * 109.47706 * 181.02978 * 11 10 9 37 37 H 1.09000 * 113.82061 * 24.44472 * 14 12 11 38 38 H 1.08996 * 113.81784 * 156.01345 * 14 12 11 39 39 H 1.09000 * 109.42799 * 309.84414 * 20 18 16 40 40 H 1.08999 * 109.42928 * 69.74172 * 20 18 16 41 41 H 1.08998 * 109.42065 * 191.78810 * 21 20 18 42 42 H 1.08998 * 109.42179 * 311.67257 * 21 20 18 43 43 H 1.08996 * 109.71901 * 69.01648 * 22 21 20 44 44 H 1.09002 * 109.71282 * 189.66617 * 22 21 20 45 45 H 1.07999 * 126.19080 * 180.02562 * 27 25 24 46 46 H 1.08995 * 108.71531 * 19.76393 * 31 9 7 47 47 H 1.09006 * 108.71824 * 261.73988 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6035 1.9852 -1.3948 5 1 1.3988 2.6808 0.5916 6 1 3.4908 1.4729 0.8031 7 6 2.0101 -1.2023 -0.0005 8 1 3.0781 -1.2093 0.1601 9 7 1.3407 -2.3792 -0.2049 10 6 1.8701 -3.6273 0.3535 11 6 2.0768 -4.6119 -0.8007 12 6 0.7433 -4.8500 -1.5123 13 1 0.1400 -5.6325 -1.0518 14 6 0.9546 -5.0175 -3.0351 15 7 0.7835 -3.5513 -3.1100 16 6 1.1977 -2.5851 -3.9535 17 8 0.8151 -1.4440 -3.8032 18 6 2.1360 -2.9226 -5.0833 19 1 2.6987 -3.8232 -4.8374 20 6 3.1037 -1.7560 -5.3184 21 6 3.8906 -1.9898 -6.6099 22 6 2.9684 -1.7997 -7.8205 23 6 1.7265 -2.6294 -7.6021 24 7 0.8375 -2.9964 -8.4787 25 7 -0.1380 -3.7586 -7.8184 26 1 -0.9197 -4.1619 -8.2272 27 6 0.2029 -3.8321 -6.5122 28 6 1.3476 -3.1433 -6.3506 29 6 -0.0241 -3.5836 -1.8843 30 1 -1.0711 -3.7968 -2.0998 31 6 0.1049 -2.3870 -0.9761 32 1 -0.4850 0.8401 0.0004 33 1 1.1593 -4.0417 1.0683 34 1 2.8219 -3.4349 0.8485 35 1 2.7967 -4.1981 -1.5068 36 1 2.4535 -5.5568 -0.4092 37 1 1.9539 -5.3585 -3.3060 38 1 0.1625 -5.5791 -3.5303 39 1 2.5388 -0.8275 -5.4012 40 1 3.7968 -1.6852 -4.4802 41 1 4.7143 -1.2782 -6.6663 42 1 4.2877 -3.0049 -6.6136 43 1 2.6965 -0.7483 -7.9141 44 1 3.4772 -2.1306 -8.7259 45 1 -0.3447 -4.3495 -5.7383 46 1 0.0651 -1.4820 -1.5823 47 1 -0.7385 -2.3796 -0.2856 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084346012.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:40 Heat of formation + Delta-G solvation = 73.288520 kcal Electronic energy + Delta-G solvation = -30088.317886 eV Core-core repulsion = 26273.216895 eV Total energy + Delta-G solvation = -3815.100992 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.61971 -41.61471 -39.35011 -37.15209 -36.94239 -33.97953 -33.37924 -31.89477 -31.62222 -30.39412 -29.52226 -28.51713 -25.91467 -25.64605 -24.36428 -22.82064 -22.61835 -22.38926 -20.77348 -19.75974 -19.42653 -18.79799 -18.35770 -17.47111 -17.21670 -16.84162 -16.31374 -16.00998 -15.80675 -15.47365 -15.26760 -15.00163 -14.73844 -14.63692 -14.41131 -14.16606 -13.94451 -13.75682 -13.47276 -13.36960 -13.11889 -12.96642 -12.70595 -12.68570 -12.31393 -12.26910 -12.19280 -12.03646 -11.91715 -11.76340 -11.68937 -11.43115 -11.41387 -11.12177 -10.63856 -10.38821 -10.26890 -9.44709 -9.40956 -8.62633 -7.82510 -5.29536 0.87264 1.36811 1.43432 1.47476 1.58384 1.85630 1.95177 2.14155 2.49450 3.33470 3.39916 3.53873 3.63402 3.75907 3.77684 3.89415 4.03340 4.11714 4.25689 4.33191 4.40811 4.42847 4.51748 4.53364 4.61913 4.66138 4.66758 4.76102 4.81334 4.86253 4.91872 4.97325 5.02885 5.08616 5.11744 5.14143 5.18798 5.24618 5.37398 5.43684 5.49385 5.59503 5.60373 5.76581 5.88771 6.38815 6.43142 6.65804 7.03882 7.21916 7.46113 7.98772 8.38262 9.21058 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.012624 B = 0.004746 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.456411 B = 5897.717769 C = 7032.972614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.048 4.048 3 Si 0.956 3.044 4 H -0.298 1.298 5 H -0.293 1.293 6 H -0.260 1.260 7 C -0.254 4.254 8 H 0.063 0.937 9 N -0.602 5.602 10 C 0.138 3.862 11 C -0.106 4.106 12 C -0.100 4.100 13 H 0.123 0.877 14 C 0.110 3.890 15 N -0.635 5.635 16 C 0.534 3.466 17 O -0.588 6.588 18 C -0.004 4.004 19 H 0.113 0.887 20 C -0.108 4.108 21 C -0.100 4.100 22 C -0.041 4.041 23 C 0.080 3.920 24 N -0.315 5.315 25 N -0.474 5.474 26 H 0.453 0.547 27 C 0.078 3.922 28 C -0.242 4.242 29 C 0.109 3.891 30 H 0.084 0.916 31 C 0.181 3.819 32 H 0.242 0.758 33 H 0.024 0.976 34 H 0.052 0.948 35 H 0.046 0.954 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.117 0.883 39 H 0.042 0.958 40 H 0.061 0.939 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.105 0.895 45 H 0.194 0.806 46 H 0.052 0.948 47 H -0.011 1.011 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.473 -17.389 -13.854 22.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.243 4.243 3 Si 0.785 3.215 4 H -0.226 1.226 5 H -0.219 1.219 6 H -0.185 1.185 7 C -0.385 4.385 8 H 0.081 0.919 9 N -0.326 5.326 10 C 0.013 3.987 11 C -0.145 4.145 12 C -0.119 4.119 13 H 0.141 0.859 14 C -0.011 4.011 15 N -0.370 5.370 16 C 0.324 3.676 17 O -0.468 6.468 18 C -0.027 4.027 19 H 0.130 0.870 20 C -0.146 4.146 21 C -0.137 4.137 22 C -0.080 4.080 23 C -0.088 4.088 24 N -0.138 5.138 25 N -0.184 5.184 26 H 0.300 0.700 27 C -0.069 4.069 28 C -0.254 4.254 29 C 0.004 3.996 30 H 0.101 0.899 31 C 0.054 3.946 32 H 0.051 0.949 33 H 0.042 0.958 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.135 0.865 39 H 0.061 0.939 40 H 0.080 0.920 41 H 0.112 0.888 42 H 0.104 0.896 43 H 0.098 0.902 44 H 0.123 0.877 45 H 0.211 0.789 46 H 0.070 0.930 47 H 0.007 0.993 Dipole moment (debyes) X Y Z Total from point charges 3.876 -16.473 -15.115 22.691 hybrid contribution -0.593 1.562 1.049 1.973 sum 3.283 -14.911 -14.066 20.760 Atomic orbital electron populations 1.70172 1.06529 1.24978 1.56502 1.25729 0.96069 1.01166 1.01335 0.85447 0.78492 0.80463 0.77122 1.22570 1.21923 1.18450 1.19406 0.90840 0.85485 1.42742 0.91949 1.43708 1.26400 1.03687 1.58782 1.21003 0.96909 0.86402 0.94401 1.21740 0.95487 0.99615 0.97618 1.22858 0.97319 0.95535 0.96154 0.85942 1.23823 1.04095 0.78753 0.94445 1.50082 1.52400 1.08941 1.25552 1.20721 0.81335 0.83678 0.81845 1.90729 1.59436 1.23020 1.73616 1.19510 0.93908 1.00828 0.88415 0.86950 1.21473 0.97152 0.96707 0.99308 1.21510 0.97243 1.03987 0.90999 1.20278 0.89616 0.97835 1.00270 1.22711 0.97202 0.97969 0.90890 1.76917 1.01205 1.14321 1.21362 1.46273 1.22824 1.43298 1.05966 0.70013 1.22341 0.96522 1.00031 0.88028 1.19691 1.00771 1.09934 0.94977 1.22591 0.95666 0.96881 0.84443 0.89851 1.19687 0.86975 0.96228 0.91696 0.94854 0.95752 0.92987 0.93494 0.88264 0.88081 0.86537 0.93863 0.91981 0.88817 0.89640 0.90234 0.87708 0.78888 0.92967 0.99272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.54 10.80 21.65 0.23 -60.30 16 2 C -0.05 -2.93 5.05 84.87 0.43 -2.50 16 3 Si 0.96 49.72 29.57 68.60 2.03 51.75 16 4 H -0.30 -15.94 7.11 99.48 0.71 -15.23 16 5 H -0.29 -15.14 7.11 99.48 0.71 -14.43 16 6 H -0.26 -12.47 7.11 99.48 0.71 -11.77 16 7 C -0.25 -14.90 9.53 84.04 0.80 -14.10 16 8 H 0.06 3.56 7.83 -2.91 -0.02 3.54 16 9 N -0.60 -31.19 3.02 -707.78 -2.14 -33.33 16 10 C 0.14 5.43 6.47 86.39 0.56 5.99 16 11 C -0.11 -2.98 5.66 30.63 0.17 -2.80 16 12 C -0.10 -2.47 4.39 -10.31 -0.05 -2.52 16 13 H 0.12 2.23 8.14 -2.38 -0.02 2.21 16 14 C 0.11 2.10 7.79 86.34 0.67 2.77 16 15 N -0.63 -20.78 3.34 -822.75 -2.75 -23.53 16 16 C 0.53 20.72 6.63 87.65 0.58 21.31 16 17 O -0.59 -31.12 15.33 -3.05 -0.05 -31.16 16 18 C 0.00 -0.13 2.76 -12.10 -0.03 -0.16 16 19 H 0.11 2.60 7.53 -2.38 -0.02 2.58 16 20 C -0.11 -3.23 5.01 30.73 0.15 -3.07 16 21 C -0.10 -2.00 5.86 30.73 0.18 -1.82 16 22 C -0.04 -0.87 6.31 30.05 0.19 -0.68 16 23 C 0.08 2.13 7.10 43.44 0.31 2.44 16 24 N -0.32 -8.37 12.68 -47.13 -0.60 -8.97 16 25 N -0.47 -9.91 7.37 -57.89 -0.43 -10.33 16 26 H 0.45 6.09 8.96 -213.19 -1.91 4.17 16 27 C 0.08 1.74 11.50 83.33 0.96 2.70 16 28 C -0.24 -6.48 5.41 -20.10 -0.11 -6.59 16 29 C 0.11 3.95 4.22 43.75 0.18 4.14 16 30 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 31 C 0.18 9.33 4.61 85.81 0.40 9.73 16 32 H 0.24 15.46 8.31 -92.70 -0.77 14.69 16 33 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.05 2.04 7.90 -2.39 -0.02 2.02 16 35 H 0.05 1.48 7.69 -2.38 -0.02 1.46 16 36 H 0.10 1.98 8.14 -2.39 -0.02 1.97 16 37 H 0.10 1.52 7.64 -2.39 -0.02 1.51 16 38 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.04 1.60 7.49 -2.39 -0.02 1.58 16 40 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.08 1.42 8.10 -2.39 -0.02 1.40 16 43 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.19 3.29 8.06 -2.91 -0.02 3.27 16 46 H 0.05 3.28 4.93 -2.39 -0.01 3.26 16 47 H -0.01 -0.60 7.95 -2.38 -0.02 -0.62 16 Total: -1.00 -88.33 367.41 0.78 -87.55 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -0.92 Total: 13.51 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: 5.40 Total: 14.82 kcal Atomic # 7 Polarization: -130.79 SS G_CDS: -5.68 Total: -136.47 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -0.05 Total: -31.16 kcal Atomic # 14 Polarization: 49.72 SS G_CDS: 2.03 Total: 51.75 kcal Total: -88.33 0.78 -87.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084346012.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.839 kcal (2) G-P(sol) polarization free energy of solvation -88.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds