Wall clock time and date at job start Tue Mar 31 2020 06:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 120.00306 * 2 1 4 4 H 1.48498 * 109.47322 * 271.94315 * 3 2 1 5 5 H 1.48500 * 109.47106 * 31.94094 * 3 2 1 6 6 H 1.48496 * 109.47267 * 151.93889 * 3 2 1 7 7 C 1.38811 * 119.99584 * 179.72284 * 2 1 3 8 8 H 1.08000 * 119.99916 * 344.81131 * 7 2 1 9 9 N 1.36932 * 120.00019 * 164.81061 * 7 2 1 10 10 C 1.46623 * 119.89003 * 327.84017 * 9 7 2 11 11 C 1.53104 * 108.00548 * 237.30247 * 10 9 7 12 12 C 1.53011 * 109.44880 * 301.01689 * 11 10 9 13 13 H 1.09000 * 113.42675 * 275.04988 * 12 11 10 14 14 C 1.54650 * 110.83767 * 143.89419 * 12 11 10 15 15 N 1.47805 * 85.79318 * 270.23317 * 14 12 11 16 16 C 1.34774 * 135.00997 * 153.78852 * 15 14 12 17 17 O 1.21291 * 119.99867 * 175.49032 * 16 15 14 18 18 C 1.50692 * 120.00444 * 355.49122 * 16 15 14 19 19 H 1.09001 * 109.71501 * 335.72415 * 18 16 15 20 20 C 1.53390 * 109.72121 * 96.37246 * 18 16 15 21 21 C 1.53060 * 109.71519 * 170.23381 * 20 18 16 22 22 C 1.53368 * 109.73421 * 288.26844 * 21 20 18 23 23 C 1.50957 * 108.20148 * 50.68922 * 22 21 20 24 24 N 1.30127 * 128.28350 * 163.18480 * 23 22 21 25 25 N 1.40319 * 108.11982 * 180.18532 * 24 23 22 26 26 H 0.96996 * 126.00426 * 179.97438 * 25 24 23 27 27 C 1.35198 * 107.99353 * 359.96252 * 25 24 23 28 28 C 1.34573 * 107.61594 * 359.97219 * 27 25 24 29 29 C 1.46824 * 89.97697 * 333.80556 * 15 14 12 30 30 H 1.08996 * 111.56212 * 274.48222 * 29 15 14 31 31 C 1.45679 * 119.89219 * 147.56450 * 9 7 2 32 32 H 0.97005 * 119.99396 * 0.27822 * 1 2 3 33 33 H 1.08995 * 109.75487 * 356.92904 * 10 9 7 34 34 H 1.09003 * 109.75214 * 117.67621 * 10 9 7 35 35 H 1.08996 * 109.47914 * 61.01561 * 11 10 9 36 36 H 1.09003 * 109.47232 * 181.02471 * 11 10 9 37 37 H 1.09000 * 113.82197 * 24.45530 * 14 12 11 38 38 H 1.09001 * 113.82135 * 156.01486 * 14 12 11 39 39 H 1.09000 * 109.42652 * 290.29523 * 20 18 16 40 40 H 1.09001 * 109.42397 * 50.14018 * 20 18 16 41 41 H 1.08994 * 109.41760 * 168.19675 * 21 20 18 42 42 H 1.08996 * 109.44339 * 48.35888 * 21 20 18 43 43 H 1.08997 * 109.72193 * 291.01213 * 22 21 20 44 44 H 1.08996 * 109.72093 * 170.36180 * 22 21 20 45 45 H 1.08003 * 126.19237 * 179.97438 * 27 25 24 46 46 H 1.09005 * 108.71510 * 261.77007 * 31 9 7 47 47 H 1.09000 * 108.71481 * 19.79106 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4567 2.0701 -1.3992 5 1 1.4689 2.6404 0.7407 6 1 3.5677 1.4285 0.6586 7 6 2.0102 -1.2022 0.0058 8 1 1.4984 -2.1199 0.2553 9 7 3.3436 -1.2245 -0.3048 10 6 3.8854 -0.2621 -1.2692 11 6 4.5511 -1.0499 -2.4008 12 6 5.6596 -1.9326 -1.8234 13 1 6.6110 -1.4135 -1.7079 14 6 5.7374 -3.2811 -2.5766 15 7 4.7653 -3.7712 -1.5769 16 6 3.8232 -4.7348 -1.5561 17 8 3.2133 -4.9647 -0.5332 18 6 3.5275 -5.5265 -2.8037 19 1 3.8121 -4.9479 -3.6825 20 6 4.3089 -6.8462 -2.7767 21 6 3.8292 -7.7536 -3.9121 22 6 2.4266 -8.2855 -3.5926 23 6 1.5510 -7.1132 -3.2215 24 7 0.2517 -7.0613 -3.1714 25 7 -0.1186 -5.7652 -2.7816 26 1 -1.0257 -5.4428 -2.6631 27 6 1.0110 -5.0449 -2.6000 28 6 2.0553 -5.8518 -2.8633 29 6 5.2512 -2.7731 -0.6160 30 1 6.1199 -3.1357 -0.0665 31 6 4.2204 -2.2004 0.3286 32 1 -0.4849 0.8401 -0.0041 33 1 3.0784 0.3501 -1.6717 34 1 4.6228 0.3743 -0.7800 35 1 3.8077 -1.6760 -2.8940 36 1 4.9790 -0.3556 -3.1240 37 1 5.3428 -3.2416 -3.5919 38 1 6.7128 -3.7637 -2.5157 39 1 5.3720 -6.6406 -2.9015 40 1 4.1464 -7.3441 -1.8208 41 1 4.5181 -8.5911 -4.0222 42 1 3.7985 -7.1859 -4.8420 43 1 2.4795 -8.9838 -2.7574 44 1 2.0159 -8.7886 -4.4679 45 1 1.0654 -4.0094 -2.2982 46 1 4.7332 -1.7207 1.1623 47 1 3.6117 -3.0162 0.7185 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084346013.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:44 Heat of formation + Delta-G solvation = 101.069838 kcal Electronic energy + Delta-G solvation = -30066.717215 eV Core-core repulsion = 26252.820912 eV Total energy + Delta-G solvation = -3813.896303 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.40156 -40.50300 -38.03517 -36.15947 -35.53385 -32.27918 -31.86174 -31.12838 -30.39736 -29.36363 -28.24346 -27.18392 -24.88018 -23.71006 -23.36955 -21.89588 -21.32332 -21.18033 -19.76253 -18.68739 -17.76381 -17.37898 -17.00075 -16.38409 -15.66976 -15.49458 -15.22105 -14.97067 -14.63370 -14.08904 -13.93902 -13.72970 -13.64231 -13.35253 -13.13130 -12.88802 -12.61106 -12.50139 -12.42451 -12.19242 -12.06915 -11.83264 -11.38588 -11.29912 -11.14050 -11.11273 -10.92599 -10.83758 -10.76900 -10.29431 -10.24339 -9.95787 -9.66312 -9.47297 -9.18166 -9.03919 -8.67594 -8.25643 -8.20990 -6.87124 -5.92157 -3.33407 2.17589 2.81729 3.04243 3.11539 3.23842 3.29370 3.47205 3.49783 4.44758 4.52378 4.54072 4.63697 4.74527 4.91753 4.98587 5.07154 5.12682 5.22511 5.29049 5.37513 5.40453 5.43710 5.47472 5.55451 5.56904 5.68829 5.74000 5.75491 5.81968 5.85051 5.86477 5.97676 6.00107 6.13398 6.18055 6.23690 6.29075 6.33403 6.36369 6.58927 6.64784 6.81588 6.82625 6.93903 7.53299 7.88696 8.06652 8.13950 8.40389 8.65789 9.01626 9.75413 10.11367 11.24101 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.014250 B = 0.004694 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.433658 B = 5963.364307 C = 7307.037494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.023 3.977 3 Si 0.889 3.111 4 H -0.290 1.290 5 H -0.305 1.305 6 H -0.269 1.269 7 C -0.253 4.253 8 H 0.083 0.917 9 N -0.598 5.598 10 C 0.125 3.875 11 C -0.117 4.117 12 C -0.109 4.109 13 H 0.089 0.911 14 C 0.098 3.902 15 N -0.632 5.632 16 C 0.545 3.455 17 O -0.523 6.523 18 C -0.016 4.016 19 H 0.087 0.913 20 C -0.104 4.104 21 C -0.111 4.111 22 C -0.037 4.037 23 C 0.084 3.916 24 N -0.299 5.299 25 N -0.481 5.481 26 H 0.441 0.559 27 C 0.101 3.899 28 C -0.229 4.229 29 C 0.130 3.870 30 H 0.077 0.923 31 C 0.144 3.856 32 H 0.261 0.739 33 H 0.073 0.927 34 H 0.028 0.972 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.180 0.820 46 H 0.024 0.976 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.773 -10.977 -10.502 19.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.176 4.176 3 Si 0.721 3.279 4 H -0.218 1.218 5 H -0.234 1.234 6 H -0.195 1.195 7 C -0.382 4.382 8 H 0.101 0.899 9 N -0.321 5.321 10 C -0.001 4.001 11 C -0.156 4.156 12 C -0.129 4.129 13 H 0.107 0.893 14 C -0.026 4.026 15 N -0.368 5.368 16 C 0.334 3.666 17 O -0.398 6.398 18 C -0.038 4.038 19 H 0.105 0.895 20 C -0.142 4.142 21 C -0.149 4.149 22 C -0.076 4.076 23 C -0.084 4.084 24 N -0.121 5.121 25 N -0.188 5.188 26 H 0.285 0.715 27 C -0.046 4.046 28 C -0.241 4.241 29 C 0.026 3.974 30 H 0.095 0.905 31 C 0.018 3.982 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.046 0.954 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.101 0.899 44 H 0.099 0.901 45 H 0.197 0.803 46 H 0.042 0.958 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.020 -11.838 -10.053 19.043 hybrid contribution 0.649 1.825 0.245 1.953 sum 11.669 -10.013 -9.808 18.238 Atomic orbital electron populations 1.69785 1.05709 1.26366 1.53932 1.25359 0.95260 0.97560 0.99378 0.86860 0.79895 0.84350 0.76835 1.21763 1.23377 1.19450 1.18926 0.82481 0.94173 1.42574 0.89934 1.43788 1.05992 1.36265 1.46078 1.21267 0.96860 0.92095 0.89831 1.21851 0.96632 0.98439 0.98684 1.22878 0.99531 0.94724 0.95724 0.89316 1.23525 0.92134 0.92701 0.94193 1.49871 1.35185 1.34045 1.17726 1.20038 0.78630 0.78080 0.89900 1.90712 1.49686 1.65863 1.33565 1.19537 0.91800 0.96280 0.96200 0.89533 1.21477 0.98636 0.94033 1.00020 1.21534 0.95450 0.99266 0.98641 1.20096 0.92555 0.93126 1.01869 1.22183 0.91239 0.95770 0.99249 1.76898 1.13764 0.98412 1.23058 1.46271 1.08512 1.08213 1.55824 0.71538 1.22291 0.85959 0.98977 0.97388 1.19321 0.94139 0.94297 1.16356 1.22377 0.96357 0.85974 0.92731 0.90506 1.20267 0.92183 0.93523 0.92272 0.92882 0.90875 0.95442 0.91428 0.92369 0.90297 0.90199 0.91348 0.90965 0.90802 0.91318 0.89930 0.90114 0.80261 0.95816 0.90282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.98 13.97 55.49 0.78 -27.20 16 2 C 0.02 0.65 5.28 -17.43 -0.09 0.56 16 3 Si 0.89 22.24 24.33 -169.99 -4.14 18.11 16 4 H -0.29 -6.92 6.65 56.52 0.38 -6.54 16 5 H -0.31 -7.86 7.11 56.52 0.40 -7.46 16 6 H -0.27 -6.58 6.50 56.52 0.37 -6.21 16 7 C -0.25 -7.10 9.95 -15.06 -0.15 -7.25 16 8 H 0.08 2.59 8.04 -52.49 -0.42 2.17 16 9 N -0.60 -14.02 2.73 -174.88 -0.48 -14.49 16 10 C 0.12 2.59 4.12 -3.92 -0.02 2.57 16 11 C -0.12 -1.86 5.66 -26.67 -0.15 -2.01 16 12 C -0.11 -1.44 4.39 -89.97 -0.40 -1.83 16 13 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 14 C 0.10 1.07 7.78 -3.00 -0.02 1.04 16 15 N -0.63 -9.64 3.35 -173.81 -0.58 -10.23 16 16 C 0.54 9.39 6.70 -10.99 -0.07 9.31 16 17 O -0.52 -11.43 15.41 5.55 0.09 -11.34 16 18 C -0.02 -0.22 2.76 -92.64 -0.26 -0.47 16 19 H 0.09 1.07 7.53 -51.93 -0.39 0.68 16 20 C -0.10 -1.14 5.17 -26.50 -0.14 -1.27 16 21 C -0.11 -0.99 5.86 -26.51 -0.16 -1.14 16 22 C -0.04 -0.40 6.31 -27.57 -0.17 -0.58 16 23 C 0.08 1.26 7.10 -82.34 -0.58 0.68 16 24 N -0.30 -4.87 12.68 33.75 0.43 -4.45 16 25 N -0.48 -7.56 7.37 30.35 0.22 -7.33 16 26 H 0.44 5.75 8.96 -182.43 -1.64 4.11 16 27 C 0.10 1.72 11.20 -17.37 -0.19 1.53 16 28 C -0.23 -3.65 5.05 -104.98 -0.53 -4.18 16 29 C 0.13 2.05 4.22 -69.42 -0.29 1.75 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 31 C 0.14 2.96 6.21 -5.45 -0.03 2.93 16 32 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 33 H 0.07 1.68 4.39 -51.93 -0.23 1.45 16 34 H 0.03 0.56 7.10 -51.93 -0.37 0.19 16 35 H 0.07 1.18 7.69 -51.93 -0.40 0.78 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.77 7.65 -51.93 -0.40 0.38 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 43 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.18 3.33 8.06 -52.48 -0.42 2.91 16 46 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.08 1.86 6.44 -51.93 -0.33 1.52 16 LS Contribution 361.50 15.07 5.45 5.45 Total: -1.00 -35.17 361.50 -9.93 -45.10 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -8.44 Total: 4.74 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -3.26 Total: 1.65 kcal Atomic # 7 Polarization: -64.07 SS G_CDS: 0.37 Total: -63.70 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.34 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.14 Total: 18.11 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.17 -9.93 -45.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084346013.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.170 kcal (2) G-P(sol) polarization free energy of solvation -35.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds