Wall clock time and date at job start Tue Mar 31 2020 06:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 120.00306 * 2 1 4 4 H 1.48498 * 109.47322 * 271.94315 * 3 2 1 5 5 H 1.48500 * 109.47106 * 31.94094 * 3 2 1 6 6 H 1.48496 * 109.47267 * 151.93889 * 3 2 1 7 7 C 1.38811 * 119.99584 * 179.72284 * 2 1 3 8 8 H 1.08000 * 119.99916 * 344.81131 * 7 2 1 9 9 N 1.36932 * 120.00019 * 164.81061 * 7 2 1 10 10 C 1.46623 * 119.89003 * 327.84017 * 9 7 2 11 11 C 1.53104 * 108.00548 * 237.30247 * 10 9 7 12 12 C 1.53011 * 109.44880 * 301.01689 * 11 10 9 13 13 H 1.09000 * 113.42675 * 275.04988 * 12 11 10 14 14 C 1.54650 * 110.83767 * 143.89419 * 12 11 10 15 15 N 1.47805 * 85.79318 * 270.23317 * 14 12 11 16 16 C 1.34774 * 135.00997 * 153.78852 * 15 14 12 17 17 O 1.21291 * 119.99867 * 175.49032 * 16 15 14 18 18 C 1.50692 * 120.00444 * 355.49122 * 16 15 14 19 19 H 1.09001 * 109.71501 * 335.72415 * 18 16 15 20 20 C 1.53390 * 109.72121 * 96.37246 * 18 16 15 21 21 C 1.53060 * 109.71519 * 170.23381 * 20 18 16 22 22 C 1.53368 * 109.73421 * 288.26844 * 21 20 18 23 23 C 1.50957 * 108.20148 * 50.68922 * 22 21 20 24 24 N 1.30127 * 128.28350 * 163.18480 * 23 22 21 25 25 N 1.40319 * 108.11982 * 180.18532 * 24 23 22 26 26 H 0.96996 * 126.00426 * 179.97438 * 25 24 23 27 27 C 1.35198 * 107.99353 * 359.96252 * 25 24 23 28 28 C 1.34573 * 107.61594 * 359.97219 * 27 25 24 29 29 C 1.46824 * 89.97697 * 333.80556 * 15 14 12 30 30 H 1.08996 * 111.56212 * 274.48222 * 29 15 14 31 31 C 1.45679 * 119.89219 * 147.56450 * 9 7 2 32 32 H 0.97005 * 119.99396 * 0.27822 * 1 2 3 33 33 H 1.08995 * 109.75487 * 356.92904 * 10 9 7 34 34 H 1.09003 * 109.75214 * 117.67621 * 10 9 7 35 35 H 1.08996 * 109.47914 * 61.01561 * 11 10 9 36 36 H 1.09003 * 109.47232 * 181.02471 * 11 10 9 37 37 H 1.09000 * 113.82197 * 24.45530 * 14 12 11 38 38 H 1.09001 * 113.82135 * 156.01486 * 14 12 11 39 39 H 1.09000 * 109.42652 * 290.29523 * 20 18 16 40 40 H 1.09001 * 109.42397 * 50.14018 * 20 18 16 41 41 H 1.08994 * 109.41760 * 168.19675 * 21 20 18 42 42 H 1.08996 * 109.44339 * 48.35888 * 21 20 18 43 43 H 1.08997 * 109.72193 * 291.01213 * 22 21 20 44 44 H 1.08996 * 109.72093 * 170.36180 * 22 21 20 45 45 H 1.08003 * 126.19237 * 179.97438 * 27 25 24 46 46 H 1.09005 * 108.71510 * 261.77007 * 31 9 7 47 47 H 1.09000 * 108.71481 * 19.79106 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4567 2.0701 -1.3992 5 1 1.4689 2.6404 0.7407 6 1 3.5677 1.4285 0.6586 7 6 2.0102 -1.2022 0.0058 8 1 1.4984 -2.1199 0.2553 9 7 3.3436 -1.2245 -0.3048 10 6 3.8854 -0.2621 -1.2692 11 6 4.5511 -1.0499 -2.4008 12 6 5.6596 -1.9326 -1.8234 13 1 6.6110 -1.4135 -1.7079 14 6 5.7374 -3.2811 -2.5766 15 7 4.7653 -3.7712 -1.5769 16 6 3.8232 -4.7348 -1.5561 17 8 3.2133 -4.9647 -0.5332 18 6 3.5275 -5.5265 -2.8037 19 1 3.8121 -4.9479 -3.6825 20 6 4.3089 -6.8462 -2.7767 21 6 3.8292 -7.7536 -3.9121 22 6 2.4266 -8.2855 -3.5926 23 6 1.5510 -7.1132 -3.2215 24 7 0.2517 -7.0613 -3.1714 25 7 -0.1186 -5.7652 -2.7816 26 1 -1.0257 -5.4428 -2.6631 27 6 1.0110 -5.0449 -2.6000 28 6 2.0553 -5.8518 -2.8633 29 6 5.2512 -2.7731 -0.6160 30 1 6.1199 -3.1357 -0.0665 31 6 4.2204 -2.2004 0.3286 32 1 -0.4849 0.8401 -0.0041 33 1 3.0784 0.3501 -1.6717 34 1 4.6228 0.3743 -0.7800 35 1 3.8077 -1.6760 -2.8940 36 1 4.9790 -0.3556 -3.1240 37 1 5.3428 -3.2416 -3.5919 38 1 6.7128 -3.7637 -2.5157 39 1 5.3720 -6.6406 -2.9015 40 1 4.1464 -7.3441 -1.8208 41 1 4.5181 -8.5911 -4.0222 42 1 3.7985 -7.1859 -4.8420 43 1 2.4795 -8.9838 -2.7574 44 1 2.0159 -8.7886 -4.4679 45 1 1.0654 -4.0094 -2.2982 46 1 4.7332 -1.7207 1.1623 47 1 3.6117 -3.0162 0.7185 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084346013.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:43 Heat of formation + Delta-G solvation = 75.155887 kcal Electronic energy + Delta-G solvation = -30067.840929 eV Core-core repulsion = 26252.820912 eV Total energy + Delta-G solvation = -3815.020017 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.61324 -41.72643 -39.36839 -37.26898 -37.15698 -33.97791 -33.32929 -32.67023 -31.51495 -30.75885 -29.46122 -28.63316 -25.98444 -25.42939 -24.72759 -22.87895 -22.76967 -22.49598 -21.02604 -19.76300 -19.28545 -18.66752 -18.58651 -17.76552 -17.26935 -16.93922 -16.66434 -16.01767 -15.77533 -15.52107 -15.27977 -15.15074 -15.09590 -14.62809 -14.40923 -14.28558 -14.09441 -13.90113 -13.75385 -13.49168 -13.37579 -12.97454 -12.79218 -12.64614 -12.55765 -12.30286 -12.23332 -12.17512 -11.97559 -11.68946 -11.52779 -11.40580 -11.35957 -11.22356 -10.75837 -10.40222 -10.35693 -9.49732 -9.47072 -8.82829 -8.18062 -5.56228 0.86575 1.27148 1.40253 1.50501 1.61039 1.81054 1.89959 2.08948 2.39379 3.08505 3.30632 3.40028 3.47373 3.63819 3.79391 3.88878 3.98382 4.13915 4.18406 4.29231 4.32824 4.36920 4.42377 4.46657 4.55976 4.56228 4.62755 4.66901 4.71259 4.79605 4.85950 4.89933 4.92167 5.00519 5.04958 5.09286 5.12376 5.17880 5.25864 5.28424 5.29628 5.46382 5.58403 5.69076 5.90245 6.11222 6.28847 6.64907 6.94108 6.98270 7.39229 7.64358 7.99121 9.02776 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.014250 B = 0.004694 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.433658 B = 5963.364307 C = 7307.037494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.038 4.038 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.315 1.315 6 H -0.254 1.254 7 C -0.243 4.243 8 H 0.021 0.979 9 N -0.609 5.609 10 C 0.116 3.884 11 C -0.110 4.110 12 C -0.100 4.100 13 H 0.134 0.866 14 C 0.112 3.888 15 N -0.639 5.639 16 C 0.535 3.465 17 O -0.590 6.590 18 C -0.012 4.012 19 H 0.110 0.890 20 C -0.099 4.099 21 C -0.102 4.102 22 C -0.040 4.040 23 C 0.082 3.918 24 N -0.316 5.316 25 N -0.484 5.484 26 H 0.446 0.554 27 C 0.072 3.928 28 C -0.231 4.231 29 C 0.118 3.882 30 H 0.110 0.890 31 C 0.143 3.857 32 H 0.261 0.739 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.043 0.957 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.126 0.874 39 H 0.100 0.900 40 H 0.049 0.951 41 H 0.109 0.891 42 H 0.079 0.921 43 H 0.088 0.912 44 H 0.100 0.900 45 H 0.149 0.851 46 H 0.029 0.971 47 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.194 -11.136 -13.491 25.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.232 4.232 3 Si 0.794 3.206 4 H -0.192 1.192 5 H -0.245 1.245 6 H -0.178 1.178 7 C -0.373 4.373 8 H 0.039 0.961 9 N -0.334 5.334 10 C -0.009 4.009 11 C -0.149 4.149 12 C -0.119 4.119 13 H 0.152 0.848 14 C -0.009 4.009 15 N -0.374 5.374 16 C 0.325 3.675 17 O -0.470 6.470 18 C -0.034 4.034 19 H 0.127 0.873 20 C -0.136 4.136 21 C -0.139 4.139 22 C -0.079 4.079 23 C -0.087 4.087 24 N -0.139 5.139 25 N -0.193 5.193 26 H 0.291 0.709 27 C -0.075 4.075 28 C -0.243 4.243 29 C 0.014 3.986 30 H 0.128 0.872 31 C 0.018 3.982 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.144 0.856 39 H 0.118 0.882 40 H 0.068 0.932 41 H 0.128 0.872 42 H 0.098 0.902 43 H 0.106 0.894 44 H 0.118 0.882 45 H 0.167 0.833 46 H 0.047 0.953 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 16.524 -11.988 -13.096 24.254 hybrid contribution -1.101 1.819 1.251 2.467 sum 15.423 -10.169 -11.846 21.945 Atomic orbital electron populations 1.69965 1.07786 1.27226 1.56275 1.26100 0.95972 1.01537 0.99605 0.85635 0.78506 0.78563 0.77903 1.19222 1.24484 1.17833 1.18625 0.84847 0.92073 1.41773 0.96071 1.43829 1.04446 1.37626 1.47461 1.21399 0.96561 0.92077 0.90816 1.21757 0.96983 0.98800 0.97388 1.22878 0.99905 0.95357 0.93749 0.84838 1.23830 0.92828 0.90463 0.93756 1.50094 1.35325 1.32804 1.19196 1.20696 0.78289 0.78357 0.90111 1.90687 1.52103 1.68068 1.36095 1.19684 0.90706 0.97938 0.95080 0.87254 1.21523 0.99946 0.92279 0.99899 1.21557 0.94451 1.00058 0.97876 1.20385 0.93093 0.91615 1.02828 1.22969 0.91010 0.96744 0.97951 1.76855 1.14985 0.98277 1.23770 1.46308 1.08577 1.08236 1.56156 0.70912 1.22071 0.87554 0.98349 0.99490 1.19729 0.95200 0.94399 1.14979 1.22523 0.95379 0.87314 0.93412 0.87213 1.20284 0.92287 0.91629 0.94044 0.93040 0.93546 0.93638 0.93801 0.88388 0.88522 0.85580 0.88200 0.93244 0.87244 0.90195 0.89383 0.88164 0.83341 0.95341 0.95019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.12 13.97 21.65 0.30 -62.81 16 2 C -0.04 -2.32 5.28 84.86 0.45 -1.87 16 3 Si 0.97 47.16 24.33 68.60 1.67 48.83 16 4 H -0.27 -11.88 6.65 99.48 0.66 -11.22 16 5 H -0.32 -15.84 7.11 99.48 0.71 -15.13 16 6 H -0.25 -11.64 6.50 99.48 0.65 -10.99 16 7 C -0.24 -14.71 9.95 84.03 0.84 -13.88 16 8 H 0.02 1.52 8.04 -2.91 -0.02 1.49 16 9 N -0.61 -29.41 2.73 -707.19 -1.93 -31.34 16 10 C 0.12 4.59 4.12 86.39 0.36 4.94 16 11 C -0.11 -3.12 5.66 30.63 0.17 -2.95 16 12 C -0.10 -2.10 4.39 -10.31 -0.05 -2.14 16 13 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 14 C 0.11 1.79 7.78 86.34 0.67 2.46 16 15 N -0.64 -18.24 3.35 -822.20 -2.75 -20.99 16 16 C 0.53 18.71 6.70 87.65 0.59 19.29 16 17 O -0.59 -27.86 15.41 -3.06 -0.05 -27.90 16 18 C -0.01 -0.32 2.76 -12.10 -0.03 -0.35 16 19 H 0.11 2.39 7.53 -2.39 -0.02 2.37 16 20 C -0.10 -1.86 5.17 30.75 0.16 -1.70 16 21 C -0.10 -1.38 5.86 30.74 0.18 -1.20 16 22 C -0.04 -0.77 6.31 30.05 0.19 -0.58 16 23 C 0.08 2.46 7.10 43.44 0.31 2.77 16 24 N -0.32 -10.69 12.68 -47.13 -0.60 -11.29 16 25 N -0.48 -16.71 7.37 -57.88 -0.43 -17.14 16 26 H 0.45 13.26 8.96 -213.18 -1.91 11.35 16 27 C 0.07 2.74 11.20 83.33 0.93 3.67 16 28 C -0.23 -7.61 5.05 -20.10 -0.10 -7.72 16 29 C 0.12 3.44 4.22 43.85 0.19 3.62 16 30 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 31 C 0.14 6.07 6.21 85.91 0.53 6.60 16 32 H 0.26 16.10 8.31 -92.70 -0.77 15.33 16 33 H 0.05 2.08 4.39 -2.39 -0.01 2.07 16 34 H 0.05 1.67 7.10 -2.39 -0.02 1.65 16 35 H 0.04 1.45 7.69 -2.39 -0.02 1.43 16 36 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.10 1.29 7.65 -2.39 -0.02 1.27 16 38 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.05 1.18 8.08 -2.39 -0.02 1.16 16 41 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.08 0.97 8.10 -2.39 -0.02 0.95 16 43 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.15 6.46 8.06 -2.91 -0.02 6.44 16 46 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 47 H 0.03 1.62 6.44 -2.39 -0.02 1.60 16 Total: -1.00 -88.78 361.50 0.58 -88.21 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: -1.02 Total: 23.47 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: 5.38 Total: 10.97 kcal Atomic # 7 Polarization: -138.17 SS G_CDS: -5.40 Total: -143.58 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.05 Total: -27.90 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 1.67 Total: 48.83 kcal Total: -88.78 0.58 -88.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084346013.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.364 kcal (2) G-P(sol) polarization free energy of solvation -88.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds