Wall clock time and date at job start Tue Mar 31 2020 04:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86809 * 119.99445 * 2 1 4 4 H 1.48506 * 109.46815 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46998 * 299.99565 * 3 2 1 6 6 H 1.48492 * 109.47251 * 59.99898 * 3 2 1 7 7 C 1.38804 * 120.00654 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00662 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99697 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00130 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47129 * 34.99299 * 10 9 7 12 12 C 1.52999 * 109.46944 * 274.99901 * 10 9 7 13 13 C 1.53005 * 109.47159 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47452 * 59.99536 * 13 12 10 15 15 C 1.53002 * 109.46817 * 300.00239 * 14 13 12 16 16 C 1.52997 * 109.47473 * 154.99556 * 10 9 7 17 17 H 1.09002 * 109.47153 * 59.99757 * 16 10 9 18 18 N 1.46500 * 109.47007 * 299.99846 * 16 10 9 19 19 C 1.34779 * 119.99793 * 154.99772 * 18 16 10 20 20 O 1.21565 * 119.99939 * 0.02562 * 19 18 16 21 21 C 1.47728 * 119.99653 * 179.97438 * 19 18 16 22 22 C 1.40115 * 120.34987 * 359.72813 * 21 19 18 23 23 N 1.31265 * 121.14475 * 179.71119 * 22 21 19 24 24 C 1.32720 * 121.79738 * 0.55303 * 23 22 21 25 25 N 1.37123 * 133.39917 * 179.74079 * 24 23 22 26 26 H 0.96998 * 126.59391 * 359.95907 * 25 24 23 27 27 N 1.40186 * 106.81625 * 180.02562 * 25 24 23 28 28 N 1.28667 * 109.51265 * 359.97438 * 27 25 24 29 29 C 1.35339 * 110.00061 * 359.97438 * 28 27 25 30 30 C 1.39424 * 120.34737 * 180.02562 * 21 19 18 31 31 H 0.96993 * 120.00293 * 0.02562 * 1 2 3 32 32 H 0.97000 * 120.00379 * 359.97438 * 9 7 2 33 33 H 1.09000 * 109.47486 * 59.99569 * 12 10 9 34 34 H 1.09002 * 109.46716 * 299.99651 * 12 10 9 35 35 H 1.09002 * 109.46935 * 299.99411 * 13 12 10 36 36 H 1.09001 * 109.46812 * 179.97438 * 13 12 10 37 37 H 1.08993 * 109.47194 * 179.97438 * 14 13 12 38 38 H 1.09002 * 109.46695 * 59.99734 * 14 13 12 39 39 H 1.08992 * 109.47063 * 299.99823 * 15 14 13 40 40 H 1.09004 * 109.46733 * 179.97438 * 15 14 13 41 41 H 0.97004 * 120.00223 * 334.99863 * 18 16 10 42 42 H 1.07999 * 119.42645 * 359.97438 * 22 21 19 43 43 H 1.08004 * 120.95476 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2126 6 1 1.8913 2.3966 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9690 -3.5504 0.5899 12 6 2.4221 -4.0355 -1.4365 13 6 3.1866 -5.3608 -1.4366 14 6 2.3091 -6.4559 -0.8271 15 6 1.9453 -6.0770 0.6100 16 6 1.1812 -4.7521 0.6102 17 1 0.2704 -4.8584 0.0209 18 7 0.8329 -4.3894 1.9862 19 6 -0.2851 -4.8863 2.5517 20 8 -1.0041 -5.6358 1.9201 21 6 -0.6359 -4.5210 3.9394 22 6 0.1912 -3.6630 4.6763 23 7 -0.1085 -3.3237 5.9085 24 6 -1.1962 -3.7823 6.5152 25 7 -1.7274 -3.5949 7.7654 26 1 -1.3580 -3.0453 8.4742 27 7 -2.9061 -4.3515 7.8228 28 7 -3.0852 -4.9539 6.7001 29 6 -2.0781 -4.6531 5.8475 30 6 -1.7904 -5.0312 4.5317 31 1 -0.4850 0.8400 -0.0004 32 1 0.3557 -2.3881 0.0005 33 1 3.0469 -3.2551 -1.8709 34 1 1.5113 -4.1418 -2.0258 35 1 4.0974 -5.2549 -0.8471 36 1 3.4454 -5.6308 -2.4604 37 1 2.8536 -7.4001 -0.8276 38 1 1.3983 -6.5617 -1.4166 39 1 2.8560 -5.9712 1.1994 40 1 1.3197 -6.8571 1.0440 41 1 1.4069 -3.7916 2.4904 42 1 1.0886 -3.2708 4.2213 43 1 -2.4443 -5.6987 3.9900 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085226927.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:21 Heat of formation + Delta-G solvation = 89.689570 kcal Electronic energy + Delta-G solvation = -27968.270403 eV Core-core repulsion = 24050.340271 eV Total energy + Delta-G solvation = -3917.930132 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.60388 -40.15681 -38.72015 -37.65670 -34.23952 -34.12994 -33.94392 -31.93000 -31.25872 -31.03813 -29.20868 -27.74118 -25.13991 -24.58139 -23.76677 -22.93016 -22.20536 -21.14200 -20.59881 -19.75992 -18.92258 -18.44578 -17.44979 -16.90949 -16.60723 -16.35497 -15.74431 -15.06136 -14.80889 -14.35087 -14.07852 -13.93099 -13.71817 -13.63797 -13.40170 -13.18099 -13.01390 -12.83958 -12.68815 -12.25626 -12.21169 -12.13239 -11.74416 -11.13533 -10.98030 -10.90528 -10.80616 -10.64437 -10.39766 -10.21819 -10.18015 -9.80182 -9.71039 -9.61303 -9.58511 -9.29614 -8.98640 -8.71606 -7.05120 -5.83923 -3.14128 -0.04140 0.43018 1.73608 1.81325 2.75055 3.12858 3.37347 3.43367 3.45956 3.56986 3.64194 3.99403 4.02963 4.40776 4.49309 4.50280 4.81260 5.00736 5.07050 5.11095 5.23765 5.44011 5.46549 5.47699 5.62080 5.66627 5.75847 5.83865 5.88100 5.90239 5.92961 6.07465 6.25918 6.38551 6.40374 6.42126 6.43241 6.53135 6.75268 6.82866 7.00944 7.22486 7.48975 7.62923 7.69972 8.32535 8.34142 9.45317 10.00877 10.35876 11.37828 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.009775 B = 0.003883 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.738551 B = 7208.394726 C = 9451.952834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.009 4.009 3 Si 0.903 3.097 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.722 5.722 10 C 0.173 3.827 11 H 0.052 0.948 12 C -0.133 4.133 13 C -0.120 4.120 14 C -0.114 4.114 15 C -0.124 4.124 16 C 0.141 3.859 17 H 0.088 0.912 18 N -0.698 5.698 19 C 0.570 3.430 20 O -0.538 6.538 21 C -0.198 4.198 22 C 0.221 3.779 23 N -0.488 5.488 24 C 0.294 3.706 25 N -0.484 5.484 26 H 0.454 0.546 27 N 0.014 4.986 28 N -0.192 5.192 29 C -0.076 4.076 30 C 0.081 3.919 31 H 0.255 0.745 32 H 0.385 0.615 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.402 0.598 42 H 0.182 0.818 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.771 -11.635 9.622 15.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.205 4.205 3 Si 0.734 3.266 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.363 5.363 10 C 0.062 3.938 11 H 0.070 0.930 12 C -0.174 4.174 13 C -0.158 4.158 14 C -0.152 4.152 15 C -0.163 4.163 16 C 0.036 3.964 17 H 0.106 0.894 18 N -0.348 5.348 19 C 0.355 3.645 20 O -0.416 6.416 21 C -0.207 4.207 22 C 0.048 3.952 23 N -0.202 5.202 24 C 0.049 3.951 25 N -0.210 5.210 26 H 0.302 0.698 27 N 0.031 4.969 28 N -0.073 5.073 29 C -0.201 4.201 30 C 0.050 3.950 31 H 0.065 0.935 32 H 0.219 0.781 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.238 0.762 42 H 0.199 0.801 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 1.640 -11.885 10.558 15.981 hybrid contribution 0.928 1.634 -0.312 1.904 sum 2.568 -10.251 10.245 14.719 Atomic orbital electron populations 1.69671 1.05089 1.25598 1.57213 1.24725 0.95406 0.97603 1.02790 0.86194 0.78821 0.84378 0.77207 1.20542 1.21924 1.21937 1.19232 0.90945 0.83928 1.43199 0.91091 1.42440 1.05831 0.99467 1.88588 1.20473 0.93896 0.85702 0.93719 0.93015 1.22223 1.00018 0.95561 0.99620 1.21589 0.98534 0.95664 1.00032 1.21471 0.99971 0.98059 0.95698 1.21870 1.00055 0.97100 0.97321 1.21376 0.99360 0.94224 0.81440 0.89408 1.45801 1.24578 1.48680 1.15701 1.17613 0.81319 0.80655 0.84894 1.90781 1.50762 1.36658 1.63440 1.20858 0.98457 1.04180 0.97206 1.23188 0.96979 0.88345 0.86724 1.66723 1.16170 1.25690 1.11635 1.19620 0.92880 0.94869 0.87743 1.47500 1.20402 1.41348 1.11718 0.69844 1.81705 0.97193 1.03125 1.14907 1.74874 1.19478 1.15537 0.97407 1.20386 0.96340 1.05669 0.97744 1.21066 0.93107 0.91773 0.89037 0.93524 0.78105 0.91541 0.92401 0.92353 0.92672 0.92337 0.91905 0.91900 0.91774 0.76204 0.80117 0.81645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.68 13.06 55.49 0.72 -25.96 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 3 Si 0.90 21.26 29.55 -169.99 -5.02 16.24 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.24 -6.08 9.93 -15.06 -0.15 -6.23 16 8 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 9 N -0.72 -16.07 4.95 -53.43 -0.26 -16.34 16 10 C 0.17 2.95 2.29 -67.93 -0.16 2.79 16 11 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 12 C -0.13 -2.13 5.50 -26.73 -0.15 -2.28 16 13 C -0.12 -1.50 5.92 -26.73 -0.16 -1.66 16 14 C -0.11 -1.34 5.92 -26.73 -0.16 -1.50 16 15 C -0.12 -1.56 5.49 -26.76 -0.15 -1.71 16 16 C 0.14 2.13 1.97 -67.96 -0.13 1.99 16 17 H 0.09 1.54 7.58 -51.93 -0.39 1.15 16 18 N -0.70 -9.86 4.86 -54.81 -0.27 -10.13 16 19 C 0.57 8.45 7.74 -12.38 -0.10 8.35 16 20 O -0.54 -9.48 16.06 5.31 0.09 -9.40 16 21 C -0.20 -2.54 5.88 -104.87 -0.62 -3.16 16 22 C 0.22 2.59 10.69 -17.09 -0.18 2.41 16 23 N -0.49 -6.09 10.37 -12.03 -0.12 -6.21 16 24 C 0.29 3.65 8.49 -155.92 -1.32 2.33 16 25 N -0.48 -4.93 7.53 31.15 0.23 -4.70 16 26 H 0.45 2.98 8.96 -182.53 -1.64 1.34 16 27 N 0.01 0.16 13.82 60.35 0.83 1.00 16 28 N -0.19 -2.55 12.40 32.17 0.40 -2.15 16 29 C -0.08 -0.99 7.27 -84.74 -0.62 -1.61 16 30 C 0.08 1.02 9.75 -38.52 -0.38 0.65 16 31 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.39 9.55 7.80 -40.82 -0.32 9.23 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.40 5.12 6.64 -40.82 -0.27 4.85 16 42 H 0.18 1.73 6.39 -52.49 -0.34 1.39 16 43 H 0.17 1.95 7.71 -52.48 -0.40 1.54 16 LS Contribution 360.72 15.07 5.44 5.44 Total: -1.00 -31.16 360.72 -9.03 -40.19 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -6.71 Total: 11.96 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -4.36 Total: 0.06 kcal Atomic # 7 Polarization: -66.02 SS G_CDS: 1.54 Total: -64.48 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.09 Total: -9.40 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.16 -9.03 -40.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085226927.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.877 kcal (2) G-P(sol) polarization free energy of solvation -31.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds