Wall clock time and date at job start Tue Mar 31 2020 04:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99521 * 2 1 4 4 H 1.48508 * 109.46667 * 269.99979 * 3 2 1 5 5 H 1.48494 * 109.47329 * 29.99704 * 3 2 1 6 6 H 1.48502 * 109.47056 * 150.00552 * 3 2 1 7 7 C 1.38812 * 120.00317 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99722 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99556 * 179.97438 * 7 2 1 10 10 C 1.46498 * 119.99327 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47339 * 35.00015 * 10 9 7 12 12 C 1.52999 * 109.47354 * 274.99969 * 10 9 7 13 13 C 1.53001 * 109.47356 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.47128 * 59.99800 * 13 12 10 15 15 C 1.52999 * 109.47320 * 299.99955 * 14 13 12 16 16 C 1.53001 * 109.46983 * 59.99956 * 15 14 13 17 17 H 1.08999 * 109.47005 * 60.00120 * 16 15 14 18 18 N 1.46496 * 109.47295 * 180.02562 * 16 15 14 19 19 C 1.34779 * 120.00119 * 275.00356 * 18 16 15 20 20 O 1.21559 * 119.99536 * 359.97438 * 19 18 16 21 21 C 1.47825 * 120.00504 * 179.97438 * 19 18 16 22 22 C 1.41575 * 120.37054 * 359.97438 * 21 19 18 23 23 C 1.34817 * 120.11759 * 180.02562 * 22 21 19 24 24 N 1.36065 * 120.82241 * 359.97438 * 23 22 21 25 25 N 1.40246 * 133.73012 * 179.97438 * 24 23 22 26 26 N 1.28971 * 107.02420 * 180.02562 * 25 24 23 27 27 N 1.28550 * 110.84086 * 359.97438 * 26 25 24 28 28 C 1.32624 * 110.18027 * 0.02562 * 27 26 25 29 29 C 1.38452 * 120.37594 * 179.97438 * 21 19 18 30 30 H 0.96996 * 120.00528 * 359.97438 * 1 2 3 31 31 H 0.96996 * 120.00318 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.46555 * 300.00017 * 12 10 9 33 33 H 1.08994 * 109.47449 * 59.99899 * 12 10 9 34 34 H 1.09005 * 109.46917 * 179.97438 * 13 12 10 35 35 H 1.08999 * 109.47005 * 299.99842 * 13 12 10 36 36 H 1.08999 * 109.47144 * 60.00127 * 14 13 12 37 37 H 1.08995 * 109.47123 * 180.02562 * 14 13 12 38 38 H 1.09004 * 109.46772 * 300.00442 * 15 14 13 39 39 H 1.08996 * 109.47098 * 180.02562 * 15 14 13 40 40 H 0.96999 * 120.00656 * 94.99888 * 18 16 15 41 41 H 1.08007 * 119.94162 * 0.02562 * 22 21 19 42 42 H 1.07998 * 119.58896 * 180.27141 * 23 22 21 43 43 H 1.07997 * 120.51823 * 0.02562 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4002 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4403 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 1.4704 -2.1374 -0.0005 9 7 3.3797 -1.2019 -0.0011 10 6 4.1122 -2.4706 -0.0011 11 1 3.5647 -3.2064 -0.5901 12 6 4.2589 -2.9749 1.4360 13 6 5.0245 -4.2996 1.4360 14 6 6.4115 -4.0871 0.8260 15 6 6.2648 -3.5829 -0.6111 16 6 5.4992 -2.2582 -0.6112 17 1 6.0464 -1.5223 -0.0220 18 7 5.3582 -1.7757 -1.9872 19 6 6.3468 -1.0558 -2.5535 20 8 7.3553 -0.8064 -1.9223 21 6 6.2049 -0.5693 -3.9422 22 6 5.0340 -0.8556 -4.6847 23 6 4.9101 -0.4099 -5.9510 24 7 5.9007 0.3183 -6.5339 25 7 6.0581 0.9033 -7.7987 26 7 7.2109 1.4816 -7.8065 27 7 7.8072 1.3280 -6.6782 28 6 7.0490 0.6189 -5.8527 29 6 7.2154 0.1713 -4.5313 30 1 -0.4851 0.8400 0.0004 31 1 3.8646 -0.3619 -0.0014 32 1 4.8066 -2.2391 2.0250 33 1 3.2709 -3.1258 1.8708 34 1 5.1294 -4.6585 2.4599 35 1 4.4773 -5.0355 0.8469 36 1 6.9587 -3.3512 1.4151 37 1 6.9567 -5.0309 0.8256 38 1 5.7175 -4.3189 -1.2002 39 1 7.2528 -3.4320 -1.0458 40 1 4.5534 -1.9744 -2.4908 41 1 4.2385 -1.4321 -4.2359 42 1 4.0113 -0.6295 -6.5082 43 1 8.1175 0.4012 -3.9838 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085295916.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:24 Heat of formation + Delta-G solvation = 119.284300 kcal Electronic energy + Delta-G solvation = -28134.228355 eV Core-core repulsion = 24217.581547 eV Total energy + Delta-G solvation = -3916.646808 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.68410 -40.50911 -38.91491 -37.90976 -34.41551 -34.27660 -34.23914 -32.47911 -31.50130 -30.84531 -29.65271 -28.38322 -25.66953 -25.07742 -23.63021 -23.15486 -22.52604 -21.17170 -20.89627 -20.00041 -18.92251 -18.38165 -17.86659 -17.17489 -17.14059 -16.08289 -15.56060 -15.40293 -15.16484 -14.90246 -14.43191 -14.13822 -13.86772 -13.64831 -13.63022 -13.35388 -13.28939 -12.83400 -12.75650 -12.50451 -12.41465 -12.31709 -11.84525 -11.52048 -11.37304 -11.15460 -11.10521 -11.00451 -10.79291 -10.52493 -10.50822 -10.26442 -10.23955 -9.90612 -9.74523 -9.13509 -9.06441 -8.95250 -7.45665 -5.93182 -3.30237 -0.28550 0.05417 1.34921 1.76235 2.23195 2.72162 3.09999 3.23888 3.29880 3.35479 3.40343 3.71334 3.95925 4.20978 4.44053 4.47692 4.59189 4.75033 4.88538 4.92128 5.05561 5.09288 5.24737 5.26705 5.32260 5.37089 5.43574 5.51390 5.54422 5.59932 5.70511 5.76181 5.90990 5.92893 6.05157 6.16819 6.23406 6.27830 6.30637 6.51069 6.67211 6.81485 7.36333 7.81140 7.97723 8.02514 8.25296 9.02898 9.75615 9.94294 11.24493 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.010532 B = 0.004047 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.925477 B = 6916.379811 C = 8774.720145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.012 3.988 3 Si 0.878 3.122 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.248 4.248 8 H 0.092 0.908 9 N -0.747 5.747 10 C 0.178 3.822 11 H 0.062 0.938 12 C -0.134 4.134 13 C -0.120 4.120 14 C -0.115 4.115 15 C -0.124 4.124 16 C 0.136 3.864 17 H 0.089 0.911 18 N -0.697 5.697 19 C 0.558 3.442 20 O -0.527 6.527 21 C -0.064 4.064 22 C -0.111 4.111 23 C 0.108 3.892 24 N -0.294 5.294 25 N -0.109 5.109 26 N -0.010 5.010 27 N -0.315 5.315 28 C 0.237 3.763 29 C -0.028 4.028 30 H 0.261 0.739 31 H 0.362 0.638 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.406 0.594 41 H 0.177 0.823 42 H 0.190 0.810 43 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.486 -7.964 -6.449 15.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.185 4.185 3 Si 0.708 3.292 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.378 4.378 8 H 0.110 0.890 9 N -0.390 5.390 10 C 0.068 3.932 11 H 0.080 0.920 12 C -0.174 4.174 13 C -0.159 4.159 14 C -0.153 4.153 15 C -0.163 4.163 16 C 0.031 3.969 17 H 0.107 0.893 18 N -0.346 5.346 19 C 0.343 3.657 20 O -0.404 6.404 21 C -0.076 4.076 22 C -0.134 4.134 23 C -0.019 4.019 24 N -0.074 5.074 25 N -0.092 5.092 26 N -0.003 5.003 27 N -0.176 5.176 28 C -0.017 4.017 29 C -0.052 4.052 30 H 0.071 0.929 31 H 0.195 0.805 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.242 0.758 41 H 0.194 0.806 42 H 0.207 0.793 43 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 12.289 -7.071 -7.437 16.010 hybrid contribution -0.440 0.799 0.525 1.052 sum 11.849 -6.272 -6.912 15.083 Atomic orbital electron populations 1.69682 1.05084 1.25974 1.56894 1.24633 0.95100 0.97016 1.01734 0.86673 0.79397 0.85318 0.77810 1.21203 1.21656 1.20296 1.19018 0.80340 0.94636 1.43763 0.89042 1.42815 1.04058 1.01769 1.90330 1.20455 0.88881 0.89631 0.94241 0.92016 1.22189 1.00672 0.95570 0.99017 1.21587 0.95536 0.98403 1.00328 1.21484 0.97593 1.00736 0.95464 1.21868 1.00384 0.96403 0.97632 1.21505 0.98387 0.95907 0.81083 0.89326 1.45894 1.19737 1.53121 1.15888 1.17741 0.84037 0.78953 0.85015 1.90822 1.29151 1.57267 1.63126 1.20446 0.93956 0.97598 0.95584 1.21333 0.98768 1.01019 0.92289 1.21625 0.92590 0.93283 0.94356 1.49036 1.14012 1.32766 1.11577 1.82814 1.15059 1.16182 0.95164 1.77881 0.98973 1.10080 1.13342 1.75251 1.24849 1.20028 0.97464 1.22755 0.85175 0.97617 0.96136 1.20770 1.01125 0.94709 0.88564 0.92922 0.80536 0.92468 0.90952 0.92407 0.92103 0.91894 0.92096 0.91618 0.91663 0.75772 0.80611 0.79285 0.80204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.05 13.97 55.49 0.78 -26.27 16 2 C 0.01 0.31 5.50 -17.43 -0.10 0.22 16 3 Si 0.88 20.71 27.73 -169.99 -4.71 16.00 16 4 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.30 6.52 56.52 0.37 -5.93 16 7 C -0.25 -6.10 10.41 -15.06 -0.16 -6.25 16 8 H 0.09 2.42 8.06 -52.49 -0.42 2.00 16 9 N -0.75 -14.92 4.76 -53.43 -0.25 -15.18 16 10 C 0.18 2.73 2.29 -67.93 -0.16 2.58 16 11 H 0.06 0.94 8.08 -51.93 -0.42 0.53 16 12 C -0.13 -1.95 5.50 -26.73 -0.15 -2.10 16 13 C -0.12 -1.36 5.92 -26.73 -0.16 -1.51 16 14 C -0.11 -1.19 5.92 -26.73 -0.16 -1.34 16 15 C -0.12 -1.34 5.49 -26.73 -0.15 -1.49 16 16 C 0.14 1.78 1.98 -67.93 -0.13 1.64 16 17 H 0.09 1.34 7.58 -51.93 -0.39 0.95 16 18 N -0.70 -8.20 4.86 -54.75 -0.27 -8.47 16 19 C 0.56 6.90 7.74 -12.34 -0.10 6.81 16 20 O -0.53 -8.05 16.03 5.31 0.09 -7.97 16 21 C -0.06 -0.65 5.90 -104.63 -0.62 -1.27 16 22 C -0.11 -0.86 9.48 -39.52 -0.37 -1.23 16 23 C 0.11 0.87 11.19 -16.89 -0.19 0.68 16 24 N -0.29 -3.40 3.94 -12.43 -0.05 -3.45 16 25 N -0.11 -1.48 13.98 60.35 0.84 -0.64 16 26 N -0.01 -0.15 13.35 60.35 0.81 0.66 16 27 N -0.32 -4.55 12.27 31.03 0.38 -4.17 16 28 C 0.24 2.95 8.02 -156.36 -1.25 1.69 16 29 C -0.03 -0.30 9.70 -38.65 -0.37 -0.67 16 30 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.36 7.51 5.66 -40.82 -0.23 7.28 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.41 4.11 6.67 -40.82 -0.27 3.84 16 41 H 0.18 0.94 6.46 -52.48 -0.34 0.60 16 42 H 0.19 0.88 8.06 -52.49 -0.42 0.46 16 43 H 0.18 1.80 7.67 -52.49 -0.40 1.40 16 LS Contribution 358.38 15.07 5.40 5.40 Total: -1.00 -32.16 358.38 -6.51 -38.67 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -5.45 Total: 7.68 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -4.06 Total: -2.26 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: 2.24 Total: -57.51 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: 0.09 Total: -7.97 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.71 Total: 16.00 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.16 -6.51 -38.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085295916.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.952 kcal (2) G-P(sol) polarization free energy of solvation -32.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds