Wall clock time and date at job start Tue Mar 31 2020 04:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99521 * 2 1 4 4 H 1.48508 * 109.46667 * 269.99979 * 3 2 1 5 5 H 1.48494 * 109.47329 * 29.99704 * 3 2 1 6 6 H 1.48502 * 109.47056 * 150.00552 * 3 2 1 7 7 C 1.38812 * 120.00317 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99722 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99556 * 179.97438 * 7 2 1 10 10 C 1.46498 * 119.99327 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47339 * 35.00015 * 10 9 7 12 12 C 1.52999 * 109.47354 * 274.99969 * 10 9 7 13 13 C 1.53001 * 109.47356 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.47128 * 59.99800 * 13 12 10 15 15 C 1.52999 * 109.47320 * 299.99955 * 14 13 12 16 16 C 1.53001 * 109.46983 * 59.99956 * 15 14 13 17 17 H 1.08999 * 109.47005 * 60.00120 * 16 15 14 18 18 N 1.46496 * 109.47295 * 180.02562 * 16 15 14 19 19 C 1.34779 * 120.00119 * 275.00356 * 18 16 15 20 20 O 1.21559 * 119.99536 * 359.97438 * 19 18 16 21 21 C 1.47825 * 120.00504 * 179.97438 * 19 18 16 22 22 C 1.41575 * 120.37054 * 359.97438 * 21 19 18 23 23 C 1.34817 * 120.11759 * 180.02562 * 22 21 19 24 24 N 1.36065 * 120.82241 * 359.97438 * 23 22 21 25 25 N 1.40246 * 133.73012 * 179.97438 * 24 23 22 26 26 N 1.28971 * 107.02420 * 180.02562 * 25 24 23 27 27 N 1.28550 * 110.84086 * 359.97438 * 26 25 24 28 28 C 1.32624 * 110.18027 * 0.02562 * 27 26 25 29 29 C 1.38452 * 120.37594 * 179.97438 * 21 19 18 30 30 H 0.96996 * 120.00528 * 359.97438 * 1 2 3 31 31 H 0.96996 * 120.00318 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.46555 * 300.00017 * 12 10 9 33 33 H 1.08994 * 109.47449 * 59.99899 * 12 10 9 34 34 H 1.09005 * 109.46917 * 179.97438 * 13 12 10 35 35 H 1.08999 * 109.47005 * 299.99842 * 13 12 10 36 36 H 1.08999 * 109.47144 * 60.00127 * 14 13 12 37 37 H 1.08995 * 109.47123 * 180.02562 * 14 13 12 38 38 H 1.09004 * 109.46772 * 300.00442 * 15 14 13 39 39 H 1.08996 * 109.47098 * 180.02562 * 15 14 13 40 40 H 0.96999 * 120.00656 * 94.99888 * 18 16 15 41 41 H 1.08007 * 119.94162 * 0.02562 * 22 21 19 42 42 H 1.07998 * 119.58896 * 180.27141 * 23 22 21 43 43 H 1.07997 * 120.51823 * 0.02562 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4002 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4403 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 1.4704 -2.1374 -0.0005 9 7 3.3797 -1.2019 -0.0011 10 6 4.1122 -2.4706 -0.0011 11 1 3.5647 -3.2064 -0.5901 12 6 4.2589 -2.9749 1.4360 13 6 5.0245 -4.2996 1.4360 14 6 6.4115 -4.0871 0.8260 15 6 6.2648 -3.5829 -0.6111 16 6 5.4992 -2.2582 -0.6112 17 1 6.0464 -1.5223 -0.0220 18 7 5.3582 -1.7757 -1.9872 19 6 6.3468 -1.0558 -2.5535 20 8 7.3553 -0.8064 -1.9223 21 6 6.2049 -0.5693 -3.9422 22 6 5.0340 -0.8556 -4.6847 23 6 4.9101 -0.4099 -5.9510 24 7 5.9007 0.3183 -6.5339 25 7 6.0581 0.9033 -7.7987 26 7 7.2109 1.4816 -7.8065 27 7 7.8072 1.3280 -6.6782 28 6 7.0490 0.6189 -5.8527 29 6 7.2154 0.1713 -4.5313 30 1 -0.4851 0.8400 0.0004 31 1 3.8646 -0.3619 -0.0014 32 1 4.8066 -2.2391 2.0250 33 1 3.2709 -3.1258 1.8708 34 1 5.1294 -4.6585 2.4599 35 1 4.4773 -5.0355 0.8469 36 1 6.9587 -3.3512 1.4151 37 1 6.9567 -5.0309 0.8256 38 1 5.7175 -4.3189 -1.2002 39 1 7.2528 -3.4320 -1.0458 40 1 4.5534 -1.9744 -2.4908 41 1 4.2385 -1.4321 -4.2359 42 1 4.0113 -0.6295 -6.5082 43 1 8.1175 0.4012 -3.9838 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085295916.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:23 Heat of formation + Delta-G solvation = 97.270132 kcal Electronic energy + Delta-G solvation = -28135.182961 eV Core-core repulsion = 24217.581547 eV Total energy + Delta-G solvation = -3917.601414 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.61233 -41.51250 -39.89326 -38.95154 -35.89817 -35.39421 -35.17771 -33.42370 -33.24629 -31.70061 -30.70273 -29.72760 -26.62383 -25.95742 -25.26886 -24.02946 -23.54705 -22.44747 -21.93307 -21.04621 -20.01463 -19.58942 -19.09738 -18.16912 -18.11207 -17.06601 -16.83203 -16.40838 -16.20117 -16.11092 -15.70712 -15.12340 -15.02415 -14.81175 -14.65276 -14.45933 -14.42166 -14.24976 -13.78126 -13.69335 -13.60768 -13.13478 -13.04172 -12.93472 -12.77759 -12.37924 -12.33824 -12.13411 -12.04519 -11.81085 -11.71079 -11.45141 -11.37865 -11.33189 -11.03585 -10.87747 -10.10179 -9.83168 -9.27449 -7.98213 -5.29788 -1.13478 -0.78427 0.52667 0.85104 1.30869 1.35866 1.40591 1.45680 1.76186 2.20593 2.48793 2.52917 2.84377 3.20322 3.34083 3.40256 3.49702 3.66804 3.77019 3.90444 4.02213 4.13784 4.23003 4.28422 4.29943 4.45451 4.46302 4.52597 4.62139 4.64485 4.71574 4.77707 4.98010 5.04732 5.13722 5.17055 5.27933 5.33262 5.34659 5.46944 5.54596 5.66228 5.85074 6.25710 6.40477 7.01746 7.04824 7.12031 7.88281 8.05254 9.22920 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.010532 B = 0.004047 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.925477 B = 6916.379811 C = 8774.720145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.050 4.050 3 Si 0.933 3.067 4 H -0.277 1.277 5 H -0.307 1.307 6 H -0.265 1.265 7 C -0.211 4.211 8 H 0.069 0.931 9 N -0.749 5.749 10 C 0.176 3.824 11 H 0.070 0.930 12 C -0.131 4.131 13 C -0.112 4.112 14 C -0.112 4.112 15 C -0.116 4.116 16 C 0.144 3.856 17 H 0.069 0.931 18 N -0.691 5.691 19 C 0.561 3.439 20 O -0.557 6.557 21 C -0.058 4.058 22 C -0.098 4.098 23 C 0.113 3.887 24 N -0.293 5.293 25 N -0.122 5.122 26 N -0.030 5.030 27 N -0.340 5.340 28 C 0.227 3.773 29 C -0.032 4.032 30 H 0.254 0.746 31 H 0.360 0.640 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.416 0.584 41 H 0.207 0.793 42 H 0.228 0.772 43 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.229 -9.709 -6.629 16.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.242 4.242 3 Si 0.763 3.237 4 H -0.204 1.204 5 H -0.235 1.235 6 H -0.190 1.190 7 C -0.342 4.342 8 H 0.087 0.913 9 N -0.391 5.391 10 C 0.068 3.932 11 H 0.088 0.912 12 C -0.172 4.172 13 C -0.150 4.150 14 C -0.150 4.150 15 C -0.155 4.155 16 C 0.039 3.961 17 H 0.087 0.913 18 N -0.342 5.342 19 C 0.346 3.654 20 O -0.436 6.436 21 C -0.069 4.069 22 C -0.121 4.121 23 C -0.014 4.014 24 N -0.073 5.073 25 N -0.105 5.105 26 N -0.023 5.023 27 N -0.202 5.202 28 C -0.025 4.025 29 C -0.056 4.056 30 H 0.064 0.936 31 H 0.193 0.807 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.083 0.917 40 H 0.254 0.746 41 H 0.224 0.776 42 H 0.245 0.755 43 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 13.081 -8.860 -7.626 17.543 hybrid contribution -0.705 1.171 0.697 1.534 sum 12.376 -7.688 -6.928 16.133 Atomic orbital electron populations 1.69829 1.06799 1.26163 1.60276 1.25195 0.95581 0.99962 1.03498 0.85754 0.78367 0.81585 0.77986 1.20361 1.23458 1.19033 1.18984 0.82174 0.93290 1.39777 0.91264 1.42849 1.02530 1.03571 1.90118 1.20671 0.89806 0.87652 0.95111 0.91245 1.22090 0.99794 0.97514 0.97814 1.21522 0.95676 0.96311 1.01499 1.21483 0.96977 1.01748 0.94775 1.21822 1.00102 0.95202 0.98374 1.21322 0.96570 0.96889 0.81310 0.91277 1.45831 1.20075 1.52830 1.15428 1.17919 0.83509 0.78413 0.85515 1.90817 1.30397 1.58352 1.64077 1.20335 0.94724 0.97266 0.94609 1.21663 0.98288 1.00302 0.91821 1.22390 0.92749 0.91659 0.94555 1.49173 1.14448 1.32672 1.10964 1.82707 1.14848 1.16769 0.96186 1.77840 0.99586 1.10966 1.13880 1.75145 1.25949 1.21274 0.97871 1.22800 0.85464 0.97832 0.96418 1.20768 1.01662 0.95146 0.88013 0.93645 0.80742 0.93358 0.93461 0.91305 0.91046 0.92494 0.89765 0.89840 0.91671 0.74611 0.77606 0.75518 0.80078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -57.83 13.97 21.65 0.30 -57.52 16 2 C -0.05 -2.68 5.50 84.86 0.47 -2.21 16 3 Si 0.93 42.50 27.73 68.60 1.90 44.40 16 4 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 5 H -0.31 -14.78 7.11 99.48 0.71 -14.07 16 6 H -0.26 -11.34 6.52 99.48 0.65 -10.70 16 7 C -0.21 -10.23 10.41 84.03 0.87 -9.35 16 8 H 0.07 3.66 8.06 -2.91 -0.02 3.64 16 9 N -0.75 -28.65 4.76 -322.94 -1.54 -30.19 16 10 C 0.18 5.02 2.29 44.99 0.10 5.12 16 11 H 0.07 1.93 8.08 -2.39 -0.02 1.91 16 12 C -0.13 -3.63 5.50 30.59 0.17 -3.46 16 13 C -0.11 -2.19 5.92 30.59 0.18 -2.01 16 14 C -0.11 -1.93 5.92 30.59 0.18 -1.75 16 15 C -0.12 -2.12 5.49 30.59 0.17 -1.96 16 16 C 0.14 3.41 1.98 44.99 0.09 3.50 16 17 H 0.07 1.97 7.58 -2.39 -0.02 1.95 16 18 N -0.69 -14.26 4.86 -445.42 -2.17 -16.42 16 19 C 0.56 12.56 7.74 86.78 0.67 13.23 16 20 O -0.56 -16.20 16.03 -3.90 -0.06 -16.26 16 21 C -0.06 -1.03 5.90 -19.87 -0.12 -1.15 16 22 C -0.10 -1.15 9.48 22.31 0.21 -0.94 16 23 C 0.11 1.42 11.19 83.25 0.93 2.35 16 24 N -0.29 -6.26 3.94 -193.24 -0.76 -7.03 16 25 N -0.12 -3.22 13.98 37.02 0.52 -2.70 16 26 N -0.03 -0.89 13.35 37.02 0.49 -0.40 16 27 N -0.34 -9.88 12.27 -55.73 -0.68 -10.56 16 28 C 0.23 5.47 8.02 134.05 1.07 6.54 16 29 C -0.03 -0.65 9.70 22.87 0.22 -0.42 16 30 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 31 H 0.36 14.21 5.66 -92.71 -0.52 13.69 16 32 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 33 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.08 1.13 8.14 -2.39 -0.02 1.12 16 38 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 39 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.42 6.87 6.67 -92.71 -0.62 6.25 16 41 H 0.21 1.18 6.46 -2.91 -0.02 1.17 16 42 H 0.23 1.06 8.06 -2.91 -0.02 1.04 16 43 H 0.18 3.56 7.67 -2.91 -0.02 3.54 16 Total: -1.00 -71.43 358.38 3.10 -68.33 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: -0.13 Total: 20.85 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 5.23 Total: 7.50 kcal Atomic # 7 Polarization: -120.99 SS G_CDS: -3.83 Total: -124.82 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.06 Total: -16.26 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 1.90 Total: 44.40 kcal Total: -71.43 3.10 -68.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085295916.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.602 kcal (2) G-P(sol) polarization free energy of solvation -71.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds