Wall clock time and date at job start Tue Mar 31 2020 04:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86790 * 120.00465 * 2 1 4 4 H 1.48507 * 109.47328 * 270.00261 * 3 2 1 5 5 H 1.48505 * 109.47270 * 30.00097 * 3 2 1 6 6 H 1.48502 * 109.47522 * 150.00232 * 3 2 1 7 7 C 1.38821 * 119.99447 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99546 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00054 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99622 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.47575 * 34.99459 * 10 9 7 12 12 C 1.53004 * 109.46725 * 274.99856 * 10 9 7 13 13 C 1.52998 * 109.47140 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47005 * 59.99972 * 13 12 10 15 15 C 1.53004 * 109.47195 * 299.99995 * 14 13 12 16 16 C 1.52996 * 109.47163 * 155.00095 * 10 9 7 17 17 H 1.09006 * 109.47361 * 59.99657 * 16 10 9 18 18 N 1.46497 * 109.46997 * 299.99894 * 16 10 9 19 19 C 1.34774 * 120.00235 * 154.99891 * 18 16 10 20 20 O 1.21522 * 120.00147 * 359.97438 * 19 18 16 21 21 C 1.48131 * 120.00149 * 179.97438 * 19 18 16 22 22 N 1.33465 * 125.32263 * 0.02655 * 21 19 18 23 23 C 1.32500 * 109.75434 * 179.97438 * 22 21 19 24 24 N 1.33983 * 132.34652 * 180.02562 * 23 22 21 25 25 C 1.31259 * 120.88359 * 180.02562 * 24 23 22 26 26 C 1.40164 * 120.35742 * 0.02562 * 25 24 23 27 27 C 1.35685 * 119.27093 * 359.97438 * 26 25 24 28 28 N 1.36169 * 119.02902 * 0.02562 * 27 26 25 29 29 N 1.31993 * 125.32243 * 180.02562 * 21 19 18 30 30 H 0.97005 * 119.99651 * 359.97438 * 1 2 3 31 31 H 0.96992 * 120.00058 * 0.02562 * 9 7 2 32 32 H 1.09006 * 109.47116 * 299.99925 * 12 10 9 33 33 H 1.08999 * 109.47416 * 60.00473 * 12 10 9 34 34 H 1.08996 * 109.47406 * 179.97438 * 13 12 10 35 35 H 1.09001 * 109.46881 * 300.00324 * 13 12 10 36 36 H 1.08994 * 109.47046 * 60.00030 * 14 13 12 37 37 H 1.09004 * 109.47284 * 180.02562 * 14 13 12 38 38 H 1.09006 * 109.47116 * 300.00417 * 15 14 13 39 39 H 1.08990 * 109.47290 * 180.02562 * 15 14 13 40 40 H 0.96999 * 120.00204 * 334.99662 * 18 16 10 41 41 H 1.08000 * 119.82241 * 180.02562 * 25 24 23 42 42 H 1.08003 * 120.36955 * 179.97438 * 26 25 24 43 43 H 1.08006 * 120.48361 * 179.72347 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0101 -1.2023 -0.0005 8 1 3.0901 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0005 11 1 2.9686 -3.5507 0.5888 12 6 2.4217 -4.0356 -1.4376 13 6 3.1861 -5.3610 -1.4378 14 6 2.3083 -6.4561 -0.8283 15 6 1.9445 -6.0773 0.6087 16 6 1.1807 -4.7522 0.6091 17 1 0.2699 -4.8584 0.0196 18 7 0.8323 -4.3895 1.9850 19 6 -0.2857 -4.8863 2.5504 20 8 -1.0051 -5.6347 1.9187 21 6 -0.6377 -4.5199 3.9419 22 7 0.0724 -3.7097 4.7297 23 6 -0.5229 -3.5959 5.9079 24 7 -0.2091 -2.9099 7.0152 25 6 -0.9763 -2.9601 8.0790 26 6 -2.1430 -3.7368 8.0750 27 6 -2.4708 -4.4358 6.9592 28 7 -1.6552 -4.3640 5.8711 29 7 -1.7026 -4.9437 4.5965 30 1 -0.4850 0.8401 0.0004 31 1 0.3554 -2.3881 -0.0005 32 1 1.5109 -4.1419 -2.0270 33 1 3.0466 -3.2554 -1.8719 34 1 3.4449 -5.6311 -2.4616 35 1 4.0967 -5.2552 -0.8482 36 1 1.3977 -6.5618 -1.4178 37 1 2.8530 -7.4002 -0.8280 38 1 2.8553 -5.9715 1.1983 39 1 1.3196 -6.8576 1.0430 40 1 1.4062 -3.7918 2.4892 41 1 -0.7071 -2.3998 8.9622 42 1 -2.7742 -3.7786 8.9504 43 1 -3.3629 -5.0442 6.9361 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085369382.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:48 Heat of formation + Delta-G solvation = 111.612835 kcal Electronic energy + Delta-G solvation = -27983.499443 eV Core-core repulsion = 24066.519974 eV Total energy + Delta-G solvation = -3916.979468 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.10661 -39.91067 -38.86429 -37.66629 -34.86149 -34.01583 -33.81126 -31.71478 -31.10332 -30.90310 -29.40280 -27.78127 -25.79261 -24.58627 -23.68334 -23.42167 -21.88451 -21.04017 -20.19826 -19.58385 -18.70326 -18.39152 -17.45043 -16.95349 -16.87727 -16.21357 -15.89983 -14.99319 -14.85673 -14.74724 -14.19382 -13.90417 -13.65914 -13.62588 -13.48322 -12.97404 -12.94699 -12.92097 -12.64687 -12.34278 -12.08432 -12.07162 -11.05105 -10.87307 -10.83994 -10.72394 -10.57831 -10.48139 -10.34204 -10.30336 -10.12331 -10.02798 -9.99679 -9.67546 -9.60769 -9.11885 -8.87563 -8.66707 -6.93800 -5.72229 -3.01880 0.05266 0.34636 1.50450 1.74124 2.82628 2.98383 3.18905 3.46700 3.48022 3.51864 3.53543 3.88674 3.92349 4.35929 4.52684 4.60890 4.78435 4.93097 5.08239 5.15794 5.30817 5.40589 5.52892 5.57286 5.72378 5.73759 5.78228 5.83134 5.88943 5.92503 5.97554 6.00062 6.14401 6.33616 6.45539 6.49129 6.51360 6.60513 6.79876 6.90605 7.07444 7.10475 7.48310 7.73494 7.85282 8.34828 8.44586 9.56524 10.12040 10.46992 11.49898 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.009349 B = 0.004039 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2994.373531 B = 6931.450942 C = 9255.399043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.905 3.095 4 H -0.291 1.291 5 H -0.293 1.293 6 H -0.281 1.281 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.722 5.722 10 C 0.173 3.827 11 H 0.054 0.946 12 C -0.132 4.132 13 C -0.120 4.120 14 C -0.113 4.113 15 C -0.126 4.126 16 C 0.140 3.860 17 H 0.089 0.911 18 N -0.676 5.676 19 C 0.610 3.390 20 O -0.517 6.517 21 C 0.250 3.750 22 N -0.488 5.488 23 C 0.441 3.559 24 N -0.445 5.445 25 C 0.206 3.794 26 C -0.222 4.222 27 C 0.172 3.828 28 N -0.330 5.330 29 N -0.271 5.271 30 H 0.254 0.746 31 H 0.385 0.615 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.417 0.583 41 H 0.192 0.808 42 H 0.176 0.824 43 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.039 -12.069 16.044 20.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.207 1.207 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.362 5.362 10 C 0.063 3.937 11 H 0.072 0.928 12 C -0.173 4.173 13 C -0.158 4.158 14 C -0.151 4.151 15 C -0.165 4.165 16 C 0.035 3.965 17 H 0.107 0.893 18 N -0.326 5.326 19 C 0.389 3.611 20 O -0.390 6.390 21 C -0.034 4.034 22 N -0.221 5.221 23 C 0.080 3.920 24 N -0.159 5.159 25 C 0.018 3.982 26 C -0.247 4.247 27 C 0.035 3.965 28 N -0.111 5.111 29 N -0.105 5.105 30 H 0.064 0.936 31 H 0.218 0.782 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.254 0.746 41 H 0.209 0.791 42 H 0.193 0.807 43 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -1.754 -12.346 14.745 19.311 hybrid contribution -0.539 1.038 0.644 1.336 sum -2.294 -11.307 15.390 19.234 Atomic orbital electron populations 1.69676 1.05128 1.25552 1.57411 1.24728 0.95423 0.97628 1.02864 0.86222 0.78715 0.84039 0.77392 1.21829 1.21923 1.20704 1.19196 0.90926 0.83938 1.42963 0.91104 1.42410 1.05800 0.99490 1.88511 1.20472 0.93969 0.85602 0.93706 0.92829 1.22221 1.00029 0.95582 0.99493 1.21593 0.98578 0.95639 1.00021 1.21471 0.99993 0.98099 0.95534 1.21890 1.00212 0.96892 0.97495 1.21487 0.99531 0.94577 0.80869 0.89288 1.45689 1.23652 1.47747 1.15468 1.16281 0.82155 0.81206 0.81477 1.90819 1.50781 1.36055 1.61383 1.24363 0.89393 0.92714 0.96898 1.70912 1.29673 1.22179 0.99362 1.22721 0.83904 0.91337 0.94043 1.68094 1.31063 1.19470 0.97296 1.23651 0.88088 0.91336 0.95105 1.21992 1.01525 1.01808 0.99392 1.22219 0.94862 0.96536 0.82835 1.49085 1.19107 1.31750 1.11166 1.78935 1.21727 1.21904 0.87907 0.93605 0.78159 0.92368 0.91426 0.92610 0.92285 0.91855 0.92262 0.91693 0.91777 0.74636 0.79108 0.80672 0.79836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.54 13.06 55.49 0.72 -27.82 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 22.67 29.55 -169.99 -5.02 17.64 16 4 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 5 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.72 -17.83 4.95 -53.42 -0.26 -18.10 16 10 C 0.17 3.36 2.29 -67.93 -0.16 3.20 16 11 H 0.05 1.04 8.08 -51.93 -0.42 0.63 16 12 C -0.13 -2.31 5.50 -26.73 -0.15 -2.46 16 13 C -0.12 -1.65 5.92 -26.73 -0.16 -1.81 16 14 C -0.11 -1.48 5.92 -26.73 -0.16 -1.63 16 15 C -0.13 -1.84 5.49 -26.75 -0.15 -1.99 16 16 C 0.14 2.48 1.97 -67.96 -0.13 2.35 16 17 H 0.09 1.74 7.58 -51.93 -0.39 1.35 16 18 N -0.68 -12.50 4.91 -54.69 -0.27 -12.77 16 19 C 0.61 11.95 7.81 -12.20 -0.10 11.85 16 20 O -0.52 -11.04 16.73 5.35 0.09 -10.95 16 21 C 0.25 4.73 7.92 -156.78 -1.24 3.49 16 22 N -0.49 -9.14 10.89 -12.23 -0.13 -9.27 16 23 C 0.44 7.00 8.99 -323.05 -2.90 4.10 16 24 N -0.45 -5.71 10.48 -13.79 -0.14 -5.86 16 25 C 0.21 1.36 11.27 -17.07 -0.19 1.16 16 26 C -0.22 -0.99 10.06 -39.77 -0.40 -1.39 16 27 C 0.17 1.32 11.32 -16.54 -0.19 1.13 16 28 N -0.33 -4.58 3.91 -13.80 -0.05 -4.63 16 29 N -0.27 -4.74 12.78 32.02 0.41 -4.33 16 30 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.38 10.49 7.80 -40.82 -0.32 10.17 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.42 7.84 8.27 -40.82 -0.34 7.50 16 41 H 0.19 0.37 8.06 -52.49 -0.42 -0.05 16 42 H 0.18 -0.04 8.06 -52.48 -0.42 -0.47 16 43 H 0.18 0.75 8.06 -52.48 -0.42 0.33 16 LS Contribution 365.66 15.07 5.51 5.51 Total: -1.00 -37.03 365.66 -10.99 -48.01 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -5.67 Total: 11.63 kcal Atomic # 6 Polarization: 17.10 SS G_CDS: -6.17 Total: 10.94 kcal Atomic # 7 Polarization: -83.05 SS G_CDS: 0.27 Total: -82.78 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.09 Total: -10.95 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -37.03 -10.99 -48.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085369382.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.627 kcal (2) G-P(sol) polarization free energy of solvation -37.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds