Wall clock time and date at job start Tue Mar 31 2020 05:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.40170 * 120.36145 * 2 1 4 4 N 1.31252 * 120.35694 * 179.97438 * 3 2 1 5 5 C 1.33991 * 120.88053 * 359.97438 * 4 3 2 6 6 N 1.32498 * 132.34241 * 179.97438 * 5 4 3 7 7 C 1.33469 * 109.75024 * 180.02562 * 6 5 4 8 8 C 1.48129 * 125.32347 * 179.97438 * 7 6 5 9 9 O 1.21518 * 120.00649 * 173.06175 * 8 7 6 10 10 N 1.34782 * 120.00041 * 353.06094 * 8 7 6 11 11 C 1.46506 * 119.99782 * 4.34180 * 10 8 7 12 12 C 1.46498 * 120.00459 * 184.34781 * 10 8 7 13 13 C 1.53001 * 109.47205 * 84.51183 * 12 10 8 14 14 H 1.08996 * 112.96857 * 292.09261 * 13 12 10 15 15 C 1.53946 * 113.76374 * 63.77643 * 13 12 10 16 16 C 1.53950 * 86.28732 * 137.90683 * 15 13 12 17 17 N 1.47588 * 113.76319 * 160.41597 * 13 12 10 18 18 C 1.36930 * 134.49617 * 41.07035 * 17 13 12 19 19 H 1.08002 * 119.99742 * 4.85970 * 18 17 13 20 20 C 1.38816 * 120.00114 * 184.85392 * 18 17 13 21 21 N 1.31618 * 119.99864 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99879 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47172 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47046 * 120.00128 * 22 20 18 25 25 H 1.48499 * 109.46827 * 240.00101 * 22 20 18 26 26 N 1.31987 * 109.35726 * 0.02562 * 7 6 5 27 27 N 1.36875 * 120.22174 * 0.02562 * 5 4 3 28 28 C 1.35673 * 120.36708 * 179.97438 * 2 1 3 29 29 H 1.08993 * 109.47047 * 89.99900 * 1 2 3 30 30 H 1.09004 * 109.46842 * 210.00314 * 1 2 3 31 31 H 1.08999 * 109.47209 * 329.99593 * 1 2 3 32 32 H 1.08004 * 119.82672 * 0.02562 * 3 2 1 33 33 H 1.08998 * 109.46726 * 83.98368 * 11 10 8 34 34 H 1.08995 * 109.47191 * 203.98961 * 11 10 8 35 35 H 1.09004 * 109.47081 * 323.98901 * 11 10 8 36 36 H 1.09001 * 109.47030 * 204.52220 * 12 10 8 37 37 H 1.09007 * 109.46684 * 324.51504 * 12 10 8 38 38 H 1.08998 * 113.73751 * 252.24762 * 15 13 12 39 39 H 1.08996 * 113.74475 * 23.45711 * 15 13 12 40 40 H 1.08998 * 113.77577 * 90.69268 * 16 15 13 41 41 H 1.09000 * 113.76491 * 221.98029 * 16 15 13 42 42 H 0.96994 * 119.99483 * 180.02562 * 21 20 18 43 43 H 1.08007 * 120.48004 * 0.04634 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2156 1.2095 0.0000 4 7 3.5281 1.2094 0.0005 5 6 4.2157 0.0593 0.0015 6 7 5.5142 -0.2041 0.0018 7 6 5.7065 -1.5248 0.0024 8 6 7.0259 -2.1982 0.0023 9 8 7.0923 -3.4048 0.1300 10 7 8.1529 -1.4726 -0.1395 11 6 8.0802 -0.0105 -0.1979 12 6 9.4504 -2.1459 -0.2353 13 6 9.7010 -2.5665 -1.6849 14 1 9.0262 -3.3532 -2.0222 15 6 9.8134 -1.3834 -2.6635 16 6 10.9893 -2.1488 -3.2970 17 7 11.1207 -2.8287 -1.9911 18 6 12.1460 -3.4509 -1.3302 19 1 11.9590 -3.9490 -0.3903 20 6 13.4256 -3.4416 -1.8683 21 7 13.6534 -2.8342 -3.0135 22 14 14.8240 -4.2909 -0.9670 23 1 14.3096 -4.8939 0.2888 24 1 15.3949 -5.3557 -1.8304 25 1 15.8793 -3.2978 -0.6427 26 7 4.5373 -2.1371 0.0020 27 7 3.5542 -1.1389 0.0016 28 6 2.1929 -1.1706 0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8899 0.5139 32 1 1.6786 2.1466 0.0004 33 1 8.0536 0.3926 0.8144 34 1 8.9552 0.3761 -0.7203 35 1 7.1775 0.2873 -0.7314 36 1 10.2379 -1.4645 0.0868 37 1 9.4498 -3.0286 0.4042 38 1 8.9526 -1.2769 -3.3237 39 1 10.1028 -0.4464 -2.1879 40 1 10.6945 -2.8138 -4.1088 41 1 11.8386 -1.5155 -3.5532 42 1 14.5474 -2.8281 -3.3897 43 1 1.6668 -2.1138 0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085661760.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:09 Heat of formation + Delta-G solvation = 184.268889 kcal Electronic energy + Delta-G solvation = -27561.758107 eV Core-core repulsion = 23647.929241 eV Total energy + Delta-G solvation = -3913.828865 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.33590 -40.11498 -39.02023 -37.68634 -35.40905 -35.02632 -33.53600 -32.08055 -31.18586 -29.11202 -27.82335 -27.62235 -26.49625 -25.57144 -24.05695 -23.26607 -23.25089 -21.96546 -19.75526 -19.09590 -18.61389 -18.45350 -17.18610 -17.02275 -16.60080 -16.16763 -15.78084 -15.41222 -14.74547 -14.69699 -14.38163 -14.09607 -13.86364 -13.59856 -13.51008 -13.26898 -13.06169 -12.96806 -12.68683 -12.36609 -12.30074 -12.15647 -12.00996 -11.36795 -11.00595 -10.83753 -10.66037 -10.53799 -10.40126 -10.34990 -10.05424 -10.03695 -9.75192 -9.65719 -9.50956 -9.19239 -8.71640 -8.33370 -6.79967 -5.68882 -3.02225 -0.14604 0.14439 1.32164 1.54355 2.60688 2.76545 2.95389 3.27651 3.44013 3.49679 3.52074 3.61257 3.71232 4.01516 4.10558 4.36959 4.52633 4.61855 4.86654 5.03022 5.17816 5.23318 5.32175 5.39599 5.48362 5.55326 5.58822 5.63917 5.67321 5.79138 5.89607 6.00939 6.19265 6.30177 6.35026 6.51838 6.65099 6.76942 6.85602 6.90105 7.27683 7.34115 7.46281 7.55479 7.67274 8.06235 8.13375 9.12035 9.78360 10.68220 11.47382 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.033622 B = 0.002328 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.591833 B =12023.828343 C =12283.723532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.187 4.187 3 C 0.212 3.788 4 N -0.445 5.445 5 C 0.432 3.568 6 N -0.490 5.490 7 C 0.251 3.749 8 C 0.600 3.400 9 O -0.507 6.507 10 N -0.577 5.577 11 C 0.068 3.932 12 C 0.118 3.882 13 C 0.129 3.871 14 H 0.048 0.952 15 C -0.157 4.157 16 C 0.155 3.845 17 N -0.601 5.601 18 C -0.219 4.219 19 H 0.079 0.921 20 C -0.009 4.009 21 N -0.920 5.920 22 Si 0.910 3.090 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.291 1.291 26 N -0.269 5.269 27 N -0.325 5.325 28 C 0.167 3.833 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.192 0.808 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.047 0.953 39 H 0.074 0.926 40 H 0.023 0.977 41 H 0.078 0.922 42 H 0.252 0.748 43 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.027 11.537 5.840 32.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.194 4.194 3 C 0.024 3.976 4 N -0.158 5.158 5 C 0.073 3.927 6 N -0.225 5.225 7 C -0.033 4.033 8 C 0.380 3.620 9 O -0.379 6.379 10 N -0.309 5.309 11 C -0.074 4.074 12 C -0.005 4.005 13 C 0.021 3.979 14 H 0.066 0.934 15 C -0.196 4.196 16 C 0.031 3.969 17 N -0.328 5.328 18 C -0.347 4.347 19 H 0.097 0.903 20 C -0.205 4.205 21 N -0.568 5.568 22 Si 0.741 3.259 23 H -0.204 1.204 24 H -0.219 1.219 25 H -0.218 1.218 26 N -0.102 5.102 27 N -0.105 5.105 28 C 0.030 3.970 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.209 0.791 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.120 0.880 36 H 0.111 0.889 37 H 0.097 0.903 38 H 0.066 0.934 39 H 0.093 0.907 40 H 0.041 0.959 41 H 0.097 0.903 42 H 0.062 0.938 43 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -28.514 10.837 5.963 31.081 hybrid contribution 0.049 -1.126 0.345 1.178 sum -28.465 9.711 6.308 30.731 Atomic orbital electron populations 1.20645 0.86959 1.04336 1.03669 1.20664 0.99417 0.92025 1.07307 1.23632 0.88122 0.98938 0.86895 1.68096 1.08698 1.22386 1.16606 1.23007 0.89696 0.82838 0.97202 1.71240 1.09745 1.13568 1.27933 1.24406 0.95070 0.87582 0.96206 1.16418 0.80695 0.85699 0.79157 1.90864 1.85383 1.12717 1.48938 1.47644 1.05939 1.08070 1.69228 1.22377 1.04621 0.77834 1.02613 1.21989 0.81097 0.98113 0.99293 1.22550 0.88532 0.94638 0.92226 0.93420 1.23759 0.99104 0.97824 0.98890 1.22311 0.94307 0.92277 0.88054 1.46063 1.03297 1.66990 1.16426 1.19079 0.85998 1.27051 1.02570 0.90284 1.24777 0.97171 1.01133 0.97433 1.69834 1.20466 1.47498 1.18985 0.86067 0.82392 0.78707 0.78761 1.20424 1.21855 1.21759 1.78993 0.95138 1.06800 1.29281 1.49058 1.07055 1.08892 1.45474 1.22057 0.79403 1.01678 0.93833 0.89962 0.90502 0.89879 0.79107 0.92485 0.90639 0.88024 0.88886 0.90263 0.93444 0.90698 0.95940 0.90337 0.93811 0.79873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.01 10.03 36.01 0.36 0.37 16 2 C -0.19 -0.68 5.87 -104.81 -0.61 -1.29 16 3 C 0.21 1.00 10.96 -17.07 -0.19 0.82 16 4 N -0.44 -4.40 10.48 -13.79 -0.14 -4.54 16 5 C 0.43 5.54 8.99 -323.04 -2.90 2.64 16 6 N -0.49 -7.33 7.64 -12.23 -0.09 -7.43 16 7 C 0.25 4.13 7.64 -156.79 -1.20 2.93 16 8 C 0.60 11.00 7.65 -12.20 -0.09 10.90 16 9 O -0.51 -10.84 16.72 5.35 0.09 -10.75 16 10 N -0.58 -9.81 2.76 -182.58 -0.50 -10.32 16 11 C 0.07 0.95 9.29 59.85 0.56 1.51 16 12 C 0.12 2.28 5.28 -4.04 -0.02 2.25 16 13 C 0.13 2.82 4.55 -66.86 -0.30 2.51 16 14 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 15 C -0.16 -3.14 7.28 -25.79 -0.19 -3.33 16 16 C 0.16 3.82 7.65 -2.84 -0.02 3.80 16 17 N -0.60 -15.87 3.58 -169.68 -0.61 -16.48 16 18 C -0.22 -6.27 10.51 -15.06 -0.16 -6.43 16 19 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 20 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 21 N -0.92 -27.81 11.32 55.49 0.63 -27.18 16 22 Si 0.91 22.72 29.55 -169.99 -5.02 17.69 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 N -0.27 -4.20 12.78 32.02 0.41 -3.79 16 27 N -0.33 -3.84 3.91 -13.80 -0.05 -3.89 16 28 C 0.17 1.08 10.97 -16.55 -0.18 0.90 16 29 H 0.08 -0.05 8.14 -51.93 -0.42 -0.48 16 30 H 0.08 -0.05 8.09 -51.93 -0.42 -0.47 16 31 H 0.08 -0.12 8.10 -51.93 -0.42 -0.54 16 32 H 0.19 0.05 8.06 -52.48 -0.42 -0.37 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 1.00 6.58 -51.93 -0.34 0.66 16 35 H 0.10 1.44 5.26 -51.93 -0.27 1.17 16 36 H 0.09 1.77 8.03 -51.93 -0.42 1.35 16 37 H 0.08 1.63 7.53 -51.93 -0.39 1.24 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 1.40 6.81 -51.93 -0.35 1.05 16 40 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.08 2.09 6.97 -51.93 -0.36 1.73 16 42 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.18 0.63 8.06 -52.48 -0.42 0.21 16 LS Contribution 362.55 15.07 5.46 5.46 Total: -1.00 -37.81 362.55 -10.37 -48.18 By element: Atomic # 1 Polarization: 1.29 SS G_CDS: -5.48 Total: -4.19 kcal Atomic # 6 Polarization: 22.28 SS G_CDS: -5.05 Total: 17.24 kcal Atomic # 7 Polarization: -73.27 SS G_CDS: -0.37 Total: -73.63 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -37.81 -10.37 -48.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085661760.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 232.450 kcal (2) G-P(sol) polarization free energy of solvation -37.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 194.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 184.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds