Wall clock time and date at job start Tue Mar 31 2020 05:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46500 * 119.99519 * 2 1 4 4 C 1.53003 * 109.47178 * 85.85176 * 3 2 1 5 5 H 1.08993 * 112.96399 * 294.55696 * 4 3 2 6 6 C 1.53947 * 113.76941 * 66.23484 * 4 3 2 7 7 C 1.53944 * 86.29047 * 137.90737 * 6 4 3 8 8 N 1.47579 * 113.76841 * 162.87684 * 4 3 2 9 9 C 1.36939 * 134.49254 * 41.06566 * 8 4 3 10 10 H 1.07995 * 120.00392 * 335.60942 * 9 8 4 11 11 C 1.38811 * 119.99874 * 155.60185 * 9 8 4 12 12 N 1.31614 * 120.00269 * 176.22348 * 11 9 8 13 13 Si 1.86801 * 119.99933 * 356.22692 * 11 9 8 14 14 H 1.48497 * 109.47542 * 84.10282 * 13 11 9 15 15 H 1.48504 * 109.47133 * 204.10367 * 13 11 9 16 16 H 1.48496 * 109.47208 * 324.09920 * 13 11 9 17 17 C 1.34770 * 119.99928 * 180.02562 * 2 1 3 18 18 O 1.21572 * 120.00048 * 184.26897 * 17 2 1 19 19 C 1.47716 * 120.00275 * 4.26496 * 17 2 1 20 20 C 1.40122 * 120.35199 * 22.04516 * 19 17 2 21 21 N 1.31258 * 121.15179 * 179.97438 * 20 19 17 22 22 C 1.32721 * 121.79817 * 359.97438 * 21 20 19 23 23 C 1.40777 * 120.68227 * 359.97438 * 22 21 20 24 24 C 1.39436 * 120.35326 * 201.76884 * 19 17 2 25 25 N 1.35336 * 107.75708 * 180.02562 * 23 22 21 26 26 N 1.28671 * 109.99830 * 0.02562 * 25 23 22 27 27 N 1.37119 * 133.40142 * 180.02562 * 22 21 20 28 28 C 1.46506 * 126.59122 * 359.96087 * 27 22 21 29 29 H 1.08994 * 109.46839 * 84.36364 * 1 2 3 30 30 H 1.08998 * 109.46819 * 324.35886 * 1 2 3 31 31 H 1.09000 * 109.46892 * 204.36295 * 1 2 3 32 32 H 1.09010 * 109.46724 * 205.84823 * 3 2 1 33 33 H 1.08996 * 109.47514 * 325.84416 * 3 2 1 34 34 H 1.09001 * 113.74024 * 252.25296 * 6 4 3 35 35 H 1.08995 * 113.74301 * 23.45477 * 6 4 3 36 36 H 1.08999 * 113.77079 * 90.68819 * 7 6 4 37 37 H 1.08994 * 113.77317 * 221.97814 * 7 6 4 38 38 H 0.96996 * 120.00699 * 180.02562 * 12 11 9 39 39 H 1.07997 * 119.42234 * 359.97438 * 20 19 17 40 40 H 1.07995 * 120.95265 * 0.02562 * 24 19 17 41 41 H 1.08996 * 109.47065 * 90.00208 * 28 27 22 42 42 H 1.08997 * 109.46850 * 210.00104 * 28 27 22 43 43 H 1.09001 * 109.46875 * 330.00162 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3621 1.7627 1.4387 5 1 1.4141 2.0195 1.9112 6 6 3.2632 0.8633 2.3043 7 6 3.8674 2.1681 2.8540 8 7 3.4049 2.7948 1.5977 9 6 3.7889 3.8908 0.8721 10 1 3.5786 3.9386 -0.1861 11 6 4.4484 4.9404 1.4967 12 7 4.8833 5.9599 0.7870 13 14 4.7187 4.9060 3.3447 14 1 5.9397 4.1186 3.6519 15 1 4.8853 6.2937 3.8466 16 1 3.5459 4.2784 4.0049 17 6 2.1389 -1.1672 -0.0005 18 8 3.3521 -1.1687 0.0778 19 6 1.4034 -2.4446 -0.0962 20 6 0.1109 -2.4787 -0.6361 21 7 -0.5567 -3.6051 -0.7291 22 6 -0.0430 -4.7583 -0.3195 23 6 1.2502 -4.8124 0.2342 24 6 1.9903 -3.6302 0.3444 25 7 1.5071 -6.1011 0.5577 26 7 0.4981 -6.8402 0.2555 27 7 -0.5133 -6.0462 -0.3028 28 6 -1.8214 -6.5044 -0.7775 29 1 -0.3633 0.1009 -1.0227 30 1 -0.3633 0.8352 0.5988 31 1 -0.3633 -0.9362 0.4239 32 1 3.1802 1.1210 -0.4481 33 1 1.6427 2.0086 -0.5769 34 1 2.7185 0.2837 3.0496 35 1 3.9655 0.2612 1.7279 36 1 3.3623 2.5458 3.7430 37 1 4.9517 2.1394 2.9608 38 1 5.3445 6.6932 1.2233 39 1 -0.3441 -1.5623 -0.9817 40 1 2.9865 -3.6355 0.7613 41 1 -1.7514 -6.7743 -1.8312 42 1 -2.1332 -7.3744 -0.1996 43 1 -2.5527 -5.7055 -0.6548 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085727231.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:25 Heat of formation + Delta-G solvation = 193.572348 kcal Electronic energy + Delta-G solvation = -27803.492561 eV Core-core repulsion = 23890.067124 eV Total energy + Delta-G solvation = -3913.425437 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.75038 -40.52066 -38.72597 -37.82552 -35.67452 -35.27995 -32.58977 -32.24610 -31.44299 -28.90485 -28.25561 -28.14997 -27.02717 -25.31645 -24.28333 -23.02356 -22.74048 -21.86788 -20.25139 -19.17008 -18.96963 -18.23298 -16.96678 -16.90133 -16.81160 -16.31186 -15.87174 -15.61940 -15.04541 -14.77334 -14.37185 -14.02053 -13.93457 -13.83139 -13.50997 -13.34463 -13.33659 -13.14247 -12.85308 -12.83486 -12.45332 -12.19136 -11.84113 -11.81005 -11.45067 -11.36099 -11.16467 -10.70548 -10.39244 -10.19920 -10.02430 -9.82313 -9.73486 -9.63306 -9.39960 -9.28009 -8.92039 -8.49664 -6.99935 -5.89983 -3.29791 -0.18938 0.28388 1.35252 1.67034 2.55754 2.77955 3.27625 3.37550 3.38304 3.44650 3.46741 3.69316 3.85220 4.08183 4.22927 4.33783 4.55885 4.59490 4.67696 4.79168 4.88177 4.89798 4.97484 5.09894 5.30084 5.33007 5.33755 5.39794 5.46179 5.64910 5.72639 5.81252 5.92951 5.93873 6.15503 6.29092 6.42403 6.49592 6.52563 6.58694 7.04581 7.13281 7.33100 7.37726 7.39851 8.09154 8.37731 8.70468 9.66339 10.36643 11.26867 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.031174 B = 0.002514 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.958491 B =11135.479821 C =11540.923844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.601 5.601 3 C 0.118 3.882 4 C 0.130 3.870 5 H 0.047 0.953 6 C -0.145 4.145 7 C 0.092 3.908 8 N -0.615 5.615 9 C -0.230 4.230 10 H 0.095 0.905 11 C 0.019 3.981 12 N -0.922 5.922 13 Si 0.889 3.111 14 H -0.285 1.285 15 H -0.301 1.301 16 H -0.266 1.266 17 C 0.565 3.435 18 O -0.516 6.516 19 C -0.202 4.202 20 C 0.186 3.814 21 N -0.489 5.489 22 C 0.285 3.715 23 C -0.075 4.075 24 C 0.081 3.919 25 N -0.196 5.196 26 N 0.008 4.992 27 N -0.387 5.387 28 C 0.102 3.898 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.048 0.952 35 H 0.095 0.905 36 H 0.045 0.955 37 H 0.054 0.946 38 H 0.263 0.737 39 H 0.202 0.798 40 H 0.165 0.835 41 H 0.084 0.916 42 H 0.098 0.902 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.856 -22.733 -2.926 28.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.334 5.334 3 C -0.005 4.005 4 C 0.022 3.978 5 H 0.065 0.935 6 C -0.183 4.183 7 C -0.032 4.032 8 N -0.343 5.343 9 C -0.357 4.357 10 H 0.112 0.888 11 C -0.179 4.179 12 N -0.566 5.566 13 Si 0.719 3.281 14 H -0.212 1.212 15 H -0.229 1.229 16 H -0.191 1.191 17 C 0.351 3.649 18 O -0.392 6.392 19 C -0.211 4.211 20 C 0.014 3.986 21 N -0.204 5.204 22 C 0.042 3.958 23 C -0.201 4.201 24 C 0.050 3.950 25 N -0.076 5.076 26 N 0.027 4.973 27 N -0.183 5.183 28 C -0.039 4.039 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.115 0.885 33 H 0.096 0.904 34 H 0.067 0.933 35 H 0.114 0.886 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.218 0.782 40 H 0.182 0.818 41 H 0.103 0.897 42 H 0.117 0.883 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -16.582 -23.944 -2.971 29.277 hybrid contribution 0.354 1.117 1.079 1.593 sum -16.229 -22.827 -1.892 28.072 Atomic orbital electron populations 1.22499 0.80401 1.03927 1.01920 1.47654 1.06607 1.06340 1.72811 1.21827 0.97962 0.81967 0.98704 1.22513 0.92957 0.89100 0.93211 0.93548 1.23685 0.99510 0.96320 0.98792 1.22947 0.98550 0.90854 0.90874 1.46322 1.33194 1.30336 1.24441 1.18670 1.33434 0.91632 0.91925 0.88762 1.25067 1.00267 0.94768 0.97785 1.69713 1.42170 1.09477 1.35267 0.86789 0.78626 0.75871 0.86796 1.21201 1.22854 1.19093 1.17702 0.87021 0.82675 0.77469 1.90836 1.13021 1.86579 1.48754 1.20807 0.97275 0.95122 1.07935 1.24336 0.89468 0.95307 0.89515 1.66795 1.37011 0.95842 1.20714 1.19622 0.91465 0.87709 0.97032 1.20366 0.95996 0.93630 1.10079 1.21077 0.98850 0.86918 0.88111 1.74886 1.17636 1.01168 1.13867 1.81772 0.90997 1.14866 1.09675 1.49997 1.15981 1.03208 1.49093 1.22089 0.78386 1.02530 1.00928 0.91373 0.89976 0.90090 0.88543 0.90365 0.93316 0.88636 0.93703 0.92809 0.92747 0.78226 0.81757 0.89746 0.88344 0.88313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.40 8.70 59.85 0.52 0.93 16 2 N -0.60 -7.20 2.81 -182.74 -0.51 -7.71 16 3 C 0.12 1.87 5.40 -4.04 -0.02 1.85 16 4 C 0.13 2.40 4.57 -66.86 -0.31 2.10 16 5 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 6 C -0.14 -2.64 7.18 -25.79 -0.19 -2.83 16 7 C 0.09 2.00 5.78 -2.85 -0.02 1.99 16 8 N -0.61 -14.69 3.30 -169.73 -0.56 -15.25 16 9 C -0.23 -6.43 10.98 -15.06 -0.17 -6.60 16 10 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 11 C 0.02 0.56 5.50 -17.43 -0.10 0.47 16 12 N -0.92 -28.59 13.97 55.49 0.78 -27.82 16 13 Si 0.89 22.78 25.29 -169.99 -4.30 18.48 16 14 H -0.29 -7.25 7.07 56.52 0.40 -6.85 16 15 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 16 H -0.27 -6.49 5.49 56.52 0.31 -6.18 16 17 C 0.56 7.40 7.16 -12.39 -0.09 7.31 16 18 O -0.52 -8.73 14.18 5.30 0.08 -8.66 16 19 C -0.20 -2.13 5.58 -104.87 -0.58 -2.71 16 20 C 0.19 1.57 8.72 -17.09 -0.15 1.42 16 21 N -0.49 -4.66 10.37 -12.03 -0.12 -4.78 16 22 C 0.28 3.03 8.05 -155.93 -1.26 1.78 16 23 C -0.08 -0.88 7.27 -84.74 -0.62 -1.49 16 24 C 0.08 0.89 9.75 -38.51 -0.38 0.52 16 25 N -0.20 -2.43 12.40 32.17 0.40 -2.03 16 26 N 0.01 0.09 13.71 60.35 0.83 0.92 16 27 N -0.39 -3.59 4.10 -67.18 -0.28 -3.86 16 28 C 0.10 0.45 11.54 59.85 0.69 1.14 16 29 H 0.07 0.34 7.23 -51.93 -0.38 -0.04 16 30 H 0.08 0.59 8.11 -51.93 -0.42 0.17 16 31 H 0.08 0.48 4.89 -51.93 -0.25 0.23 16 32 H 0.10 1.81 7.36 -51.92 -0.38 1.43 16 33 H 0.08 1.18 8.10 -51.93 -0.42 0.76 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.10 1.85 6.32 -51.93 -0.33 1.52 16 36 H 0.05 0.97 6.26 -51.93 -0.33 0.65 16 37 H 0.05 1.21 7.28 -51.93 -0.38 0.83 16 38 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 39 H 0.20 1.12 4.13 -52.49 -0.22 0.90 16 40 H 0.16 1.74 7.86 -52.49 -0.41 1.33 16 41 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 16 43 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 350.62 15.07 5.28 5.28 Total: -1.00 -35.76 350.62 -6.34 -42.11 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -5.28 Total: -2.54 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -2.65 Total: 5.86 kcal Atomic # 7 Polarization: -61.07 SS G_CDS: 0.53 Total: -60.54 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.08 Total: -8.66 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -4.30 Total: 18.48 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.76 -6.34 -42.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085727231.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 235.679 kcal (2) G-P(sol) polarization free energy of solvation -35.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 199.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 193.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds