Wall clock time and date at job start Tue Mar 31 2020 05:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 120.00396 * 2 1 4 4 C 1.53004 * 109.46763 * 275.33721 * 3 2 1 5 5 H 1.09003 * 112.96611 * 68.27967 * 4 3 2 6 6 C 1.53939 * 113.76928 * 296.59332 * 4 3 2 7 7 C 1.53947 * 86.28789 * 222.09575 * 6 4 3 8 8 N 1.47575 * 86.11586 * 23.61113 * 7 6 4 9 9 C 1.36941 * 134.49128 * 155.36423 * 8 7 6 10 10 H 1.07997 * 120.00128 * 185.29135 * 9 8 7 11 11 C 1.38811 * 120.00034 * 5.28994 * 9 8 7 12 12 N 1.31622 * 120.00223 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00040 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47185 * 59.99860 * 13 11 9 15 15 H 1.48499 * 109.47159 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.46792 * 299.99726 * 13 11 9 17 17 C 1.34780 * 119.99543 * 180.02562 * 2 1 3 18 18 O 1.21545 * 119.99545 * 176.98050 * 17 2 1 19 19 C 1.47871 * 120.00213 * 357.25469 * 17 2 1 20 20 C 1.39455 * 121.11393 * 335.29786 * 19 17 2 21 21 C 1.38617 * 119.37729 * 180.02562 * 20 19 17 22 22 N 1.31594 * 121.63424 * 0.02562 * 21 20 19 23 23 C 1.32205 * 121.86601 * 359.97438 * 22 21 20 24 24 C 1.40862 * 121.11857 * 155.02126 * 19 17 2 25 25 N 1.34399 * 135.14281 * 0.75804 * 24 19 17 26 26 N 1.28686 * 109.15497 * 179.46417 * 25 24 19 27 27 N 1.28781 * 111.75765 * 359.72503 * 26 25 24 28 28 C 1.46504 * 125.87024 * 180.02562 * 27 26 25 29 29 H 1.09003 * 109.47047 * 275.90898 * 1 2 3 30 30 H 1.08999 * 109.46876 * 35.90575 * 1 2 3 31 31 H 1.08997 * 109.47831 * 155.90486 * 1 2 3 32 32 H 1.09000 * 109.46898 * 35.33614 * 3 2 1 33 33 H 1.08991 * 109.47066 * 155.33826 * 3 2 1 34 34 H 1.09001 * 113.74546 * 336.44160 * 6 4 3 35 35 H 1.08998 * 113.74026 * 107.64412 * 6 4 3 36 36 H 1.09005 * 113.76690 * 137.91277 * 7 6 4 37 37 H 1.08997 * 113.77117 * 269.19075 * 7 6 4 38 38 H 0.96990 * 120.00400 * 179.97438 * 12 11 9 39 39 H 1.07999 * 120.31572 * 359.97438 * 20 19 17 40 40 H 1.08000 * 119.18347 * 180.02562 * 21 20 19 41 41 H 1.08999 * 109.47063 * 269.96411 * 28 27 26 42 42 H 1.08999 * 109.46902 * 29.96440 * 28 27 26 43 43 H 1.08991 * 109.46796 * 149.96332 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3364 1.7774 -1.4363 5 1 1.3860 2.0855 -1.8721 6 6 3.1646 0.8513 -2.3452 7 6 3.8103 2.1355 -2.8965 8 7 3.4226 2.7599 -1.6168 9 6 3.8851 3.8239 -0.8892 10 1 3.4699 4.0328 0.0856 11 6 4.8876 4.6340 -1.4046 12 7 5.3941 4.3792 -2.5925 13 14 5.5189 6.0849 -0.4118 14 1 6.0770 5.5985 0.8755 15 1 6.5801 6.7853 -1.1789 16 1 4.4010 7.0247 -0.1431 17 6 2.1388 -1.1673 -0.0005 18 8 3.3530 -1.1680 -0.0560 19 6 1.4007 -2.4471 0.0602 20 6 0.1228 -2.5165 0.6145 21 6 -0.5363 -3.7353 0.6534 22 7 0.0140 -4.8329 0.1800 23 6 1.2218 -4.8324 -0.3574 24 6 1.9622 -3.6361 -0.4449 25 7 3.1280 -3.9673 -1.0261 26 7 3.1261 -5.2272 -1.2882 27 7 2.0289 -5.7903 -0.9175 28 6 1.6996 -7.2101 -1.0667 29 1 -0.3633 0.1058 1.0222 30 1 -0.3633 0.8324 -0.6027 31 1 -0.3634 -0.9381 -0.4195 32 1 1.6533 2.0025 0.5944 33 1 3.1880 1.1163 0.4288 34 1 3.8584 0.2094 -1.8023 35 1 2.5683 0.3082 -3.0784 36 1 4.8882 2.0589 -3.0393 37 1 3.2949 2.5492 -3.7633 38 1 6.0943 4.9454 -2.9528 39 1 -0.3485 -1.6291 1.0104 40 1 -1.5259 -3.7853 1.0829 41 1 1.2071 -7.3700 -2.0258 42 1 2.6143 -7.8015 -1.0249 43 1 1.0326 -7.5149 -0.2604 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085786350.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:31 Heat of formation + Delta-G solvation = 193.789153 kcal Electronic energy + Delta-G solvation = -28228.006659 eV Core-core repulsion = 24314.590623 eV Total energy + Delta-G solvation = -3913.416036 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -43.59829 -40.37121 -38.90374 -37.56019 -35.47928 -35.27384 -32.78901 -31.99620 -31.12384 -28.62476 -28.20144 -27.72412 -27.10799 -25.26589 -23.97071 -23.24690 -22.98776 -21.61972 -19.62694 -19.22781 -18.87671 -17.85460 -17.30309 -17.18595 -16.58849 -16.02840 -15.73314 -15.42872 -15.01450 -14.54251 -14.24436 -14.00987 -13.89125 -13.50951 -13.45102 -13.36422 -13.27998 -12.93783 -12.46582 -12.32606 -12.27121 -11.94564 -11.58073 -11.33758 -11.19515 -10.95402 -10.81933 -10.61754 -10.40915 -10.23024 -9.80536 -9.63748 -9.55127 -9.48726 -9.37061 -9.15815 -8.70521 -8.36480 -6.76609 -5.67119 -2.99011 -0.15765 0.58546 1.62107 2.00482 2.72286 2.91437 3.32782 3.42588 3.45270 3.49011 3.50694 3.93346 4.01788 4.17840 4.29383 4.53680 4.60479 4.61068 4.80177 4.89915 4.99062 5.17874 5.21690 5.27479 5.31267 5.44910 5.53068 5.57075 5.65408 5.84050 5.94542 6.00433 6.05855 6.17097 6.45657 6.59518 6.73142 6.83485 6.92080 7.16942 7.37214 7.43685 7.62673 7.71725 8.00785 8.08514 8.26162 9.13665 9.80512 10.72085 11.50444 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.022529 B = 0.002874 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.556004 B = 9741.735159 C =10435.336656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.599 5.599 3 C 0.117 3.883 4 C 0.127 3.873 5 H 0.041 0.959 6 C -0.160 4.160 7 C 0.165 3.835 8 N -0.599 5.599 9 C -0.224 4.224 10 H 0.078 0.922 11 C -0.007 4.007 12 N -0.919 5.919 13 Si 0.909 3.091 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.286 1.286 17 C 0.547 3.453 18 O -0.489 6.489 19 C -0.001 4.001 20 C -0.165 4.165 21 C 0.155 3.845 22 N -0.461 5.461 23 C 0.208 3.792 24 C 0.003 3.997 25 N -0.213 5.213 26 N -0.005 5.005 27 N -0.313 5.313 28 C 0.092 3.908 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.040 0.960 36 H 0.066 0.934 37 H 0.025 0.975 38 H 0.253 0.747 39 H 0.176 0.824 40 H 0.181 0.819 41 H 0.091 0.909 42 H 0.104 0.896 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.577 -21.839 6.252 28.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.333 5.333 3 C -0.006 4.006 4 C 0.019 3.981 5 H 0.058 0.942 6 C -0.198 4.198 7 C 0.040 3.960 8 N -0.325 5.325 9 C -0.351 4.351 10 H 0.095 0.905 11 C -0.204 4.204 12 N -0.566 5.566 13 Si 0.740 3.260 14 H -0.211 1.211 15 H -0.216 1.216 16 H -0.213 1.213 17 C 0.332 3.668 18 O -0.362 6.362 19 C -0.017 4.017 20 C -0.188 4.188 21 C -0.018 4.018 22 N -0.175 5.175 23 C -0.034 4.034 24 C -0.126 4.126 25 N -0.087 5.087 26 N 0.013 4.987 27 N -0.114 5.114 28 C -0.049 4.049 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.108 0.892 35 H 0.058 0.942 36 H 0.084 0.916 37 H 0.042 0.958 38 H 0.063 0.937 39 H 0.193 0.807 40 H 0.198 0.802 41 H 0.109 0.891 42 H 0.122 0.878 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -15.652 -22.671 5.580 28.108 hybrid contribution -0.500 1.665 0.775 1.903 sum -16.152 -21.006 6.355 27.249 Atomic orbital electron populations 1.22476 0.80432 1.04050 1.01641 1.47674 1.06633 1.06192 1.72767 1.21905 0.97771 0.81787 0.99126 1.22508 0.92747 0.90046 0.92771 0.94201 1.23859 0.99605 0.97627 0.98699 1.22096 0.99386 0.86386 0.88133 1.45938 1.32184 1.32777 1.21612 1.18928 1.15696 1.02575 0.97929 0.90453 1.24796 0.99695 0.99140 0.96740 1.69831 1.29702 1.40092 1.16965 0.86245 0.78252 0.82436 0.79083 1.21087 1.21628 1.21287 1.17892 0.87403 0.82737 0.78723 1.90896 1.12589 1.86190 1.46496 1.19717 0.93681 0.92317 0.96033 1.23170 0.93868 1.01324 1.00418 1.22841 0.99517 0.85808 0.93586 1.66242 1.08193 1.32315 1.10705 1.19774 0.93150 0.88218 1.02265 1.20136 0.93988 0.94217 1.04293 1.75592 1.17236 1.02173 1.13666 1.78297 1.03689 1.03387 1.13288 1.47047 1.11126 1.10062 1.43155 1.22270 1.04011 0.73709 1.04881 0.91846 0.90529 0.89865 0.91060 0.88594 0.89229 0.94159 0.91574 0.95763 0.93651 0.80712 0.80245 0.89098 0.87778 0.88016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.49 8.76 59.85 0.52 1.01 16 2 N -0.60 -8.51 2.77 -182.68 -0.51 -9.02 16 3 C 0.12 2.09 5.43 -4.04 -0.02 2.07 16 4 C 0.13 2.67 4.59 -66.87 -0.31 2.37 16 5 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 6 C -0.16 -3.49 7.20 -25.81 -0.19 -3.68 16 7 C 0.17 4.24 7.39 -2.98 -0.02 4.22 16 8 N -0.60 -15.88 3.57 -170.77 -0.61 -16.49 16 9 C -0.22 -6.37 10.51 -15.06 -0.16 -6.53 16 10 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 11 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 12 N -0.92 -28.36 11.53 55.49 0.64 -27.72 16 13 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16 14 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 16 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 17 C 0.55 8.93 7.10 -12.32 -0.09 8.84 16 18 O -0.49 -10.30 14.28 5.33 0.08 -10.22 16 19 C 0.00 -0.01 5.57 -104.51 -0.58 -0.59 16 20 C -0.16 -1.32 7.62 -38.99 -0.30 -1.62 16 21 C 0.16 1.06 11.14 -17.51 -0.20 0.86 16 22 N -0.46 -4.50 10.35 -12.38 -0.13 -4.63 16 23 C 0.21 2.55 8.08 -156.21 -1.26 1.29 16 24 C 0.00 0.05 6.97 -84.72 -0.59 -0.54 16 25 N -0.21 -3.67 12.16 32.23 0.39 -3.28 16 26 N 0.00 -0.07 13.07 60.35 0.79 0.72 16 27 N -0.31 -3.49 3.80 -67.23 -0.26 -3.75 16 28 C 0.09 0.49 11.41 59.85 0.68 1.17 16 29 H 0.06 0.37 7.32 -51.93 -0.38 -0.01 16 30 H 0.08 0.65 8.12 -51.93 -0.42 0.23 16 31 H 0.08 0.58 4.87 -51.93 -0.25 0.32 16 32 H 0.07 1.15 8.11 -51.93 -0.42 0.73 16 33 H 0.10 2.04 7.31 -51.93 -0.38 1.66 16 34 H 0.09 2.13 6.31 -51.93 -0.33 1.81 16 35 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.07 1.87 7.41 -51.93 -0.38 1.49 16 37 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.18 0.85 4.50 -52.49 -0.24 0.62 16 40 H 0.18 0.40 8.06 -52.49 -0.42 -0.02 16 41 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 356.67 15.07 5.37 5.37 Total: -1.00 -39.15 356.67 -7.16 -46.31 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -5.31 Total: -3.52 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: -2.60 Total: 8.56 kcal Atomic # 7 Polarization: -64.49 SS G_CDS: 0.32 Total: -64.17 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.08 Total: -10.22 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -39.15 -7.16 -46.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085786350.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 240.099 kcal (2) G-P(sol) polarization free energy of solvation -39.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 200.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 193.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds