Wall clock time and date at job start Tue Mar 31 2020 05:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 120.00396 * 2 1 4 4 C 1.53004 * 109.46763 * 275.33721 * 3 2 1 5 5 H 1.09003 * 112.96611 * 68.27967 * 4 3 2 6 6 C 1.53939 * 113.76928 * 296.59332 * 4 3 2 7 7 C 1.53947 * 86.28789 * 222.09575 * 6 4 3 8 8 N 1.47575 * 86.11586 * 23.61113 * 7 6 4 9 9 C 1.36941 * 134.49128 * 155.36423 * 8 7 6 10 10 H 1.07997 * 120.00128 * 185.29135 * 9 8 7 11 11 C 1.38811 * 120.00034 * 5.28994 * 9 8 7 12 12 N 1.31622 * 120.00223 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00040 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47185 * 59.99860 * 13 11 9 15 15 H 1.48499 * 109.47159 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.46792 * 299.99726 * 13 11 9 17 17 C 1.34780 * 119.99543 * 180.02562 * 2 1 3 18 18 O 1.21545 * 119.99545 * 176.98050 * 17 2 1 19 19 C 1.47871 * 120.00213 * 357.25469 * 17 2 1 20 20 C 1.39455 * 121.11393 * 335.29786 * 19 17 2 21 21 C 1.38617 * 119.37729 * 180.02562 * 20 19 17 22 22 N 1.31594 * 121.63424 * 0.02562 * 21 20 19 23 23 C 1.32205 * 121.86601 * 359.97438 * 22 21 20 24 24 C 1.40862 * 121.11857 * 155.02126 * 19 17 2 25 25 N 1.34399 * 135.14281 * 0.75804 * 24 19 17 26 26 N 1.28686 * 109.15497 * 179.46417 * 25 24 19 27 27 N 1.28781 * 111.75765 * 359.72503 * 26 25 24 28 28 C 1.46504 * 125.87024 * 180.02562 * 27 26 25 29 29 H 1.09003 * 109.47047 * 275.90898 * 1 2 3 30 30 H 1.08999 * 109.46876 * 35.90575 * 1 2 3 31 31 H 1.08997 * 109.47831 * 155.90486 * 1 2 3 32 32 H 1.09000 * 109.46898 * 35.33614 * 3 2 1 33 33 H 1.08991 * 109.47066 * 155.33826 * 3 2 1 34 34 H 1.09001 * 113.74546 * 336.44160 * 6 4 3 35 35 H 1.08998 * 113.74026 * 107.64412 * 6 4 3 36 36 H 1.09005 * 113.76690 * 137.91277 * 7 6 4 37 37 H 1.08997 * 113.77117 * 269.19075 * 7 6 4 38 38 H 0.96990 * 120.00400 * 179.97438 * 12 11 9 39 39 H 1.07999 * 120.31572 * 359.97438 * 20 19 17 40 40 H 1.08000 * 119.18347 * 180.02562 * 21 20 19 41 41 H 1.08999 * 109.47063 * 269.96411 * 28 27 26 42 42 H 1.08999 * 109.46902 * 29.96440 * 28 27 26 43 43 H 1.08991 * 109.46796 * 149.96332 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3364 1.7774 -1.4363 5 1 1.3860 2.0855 -1.8721 6 6 3.1646 0.8513 -2.3452 7 6 3.8103 2.1355 -2.8965 8 7 3.4226 2.7599 -1.6168 9 6 3.8851 3.8239 -0.8892 10 1 3.4699 4.0328 0.0856 11 6 4.8876 4.6340 -1.4046 12 7 5.3941 4.3792 -2.5925 13 14 5.5189 6.0849 -0.4118 14 1 6.0770 5.5985 0.8755 15 1 6.5801 6.7853 -1.1789 16 1 4.4010 7.0247 -0.1431 17 6 2.1388 -1.1673 -0.0005 18 8 3.3530 -1.1680 -0.0560 19 6 1.4007 -2.4471 0.0602 20 6 0.1228 -2.5165 0.6145 21 6 -0.5363 -3.7353 0.6534 22 7 0.0140 -4.8329 0.1800 23 6 1.2218 -4.8324 -0.3574 24 6 1.9622 -3.6361 -0.4449 25 7 3.1280 -3.9673 -1.0261 26 7 3.1261 -5.2272 -1.2882 27 7 2.0289 -5.7903 -0.9175 28 6 1.6996 -7.2101 -1.0667 29 1 -0.3633 0.1058 1.0222 30 1 -0.3633 0.8324 -0.6027 31 1 -0.3634 -0.9381 -0.4195 32 1 1.6533 2.0025 0.5944 33 1 3.1880 1.1163 0.4288 34 1 3.8584 0.2094 -1.8023 35 1 2.5683 0.3082 -3.0784 36 1 4.8882 2.0589 -3.0393 37 1 3.2949 2.5492 -3.7633 38 1 6.0943 4.9454 -2.9528 39 1 -0.3485 -1.6291 1.0104 40 1 -1.5259 -3.7853 1.0829 41 1 1.2071 -7.3700 -2.0258 42 1 2.6143 -7.8015 -1.0249 43 1 1.0326 -7.5149 -0.2604 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085786350.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:31 Heat of formation + Delta-G solvation = 163.856675 kcal Electronic energy + Delta-G solvation = -28229.304628 eV Core-core repulsion = 24314.590623 eV Total energy + Delta-G solvation = -3914.714005 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.46839 -41.46319 -39.97909 -39.21517 -36.68218 -36.10516 -34.29470 -33.52920 -31.94169 -29.91468 -29.82792 -28.88840 -28.04067 -26.22557 -25.28773 -24.84816 -24.34822 -22.85394 -20.91757 -20.44946 -20.12489 -18.70598 -18.66396 -18.18704 -18.02281 -17.23176 -17.03854 -16.54685 -16.35488 -15.85186 -15.70726 -15.34031 -14.96019 -14.62476 -14.38081 -14.16290 -14.07364 -13.99648 -13.90241 -13.57772 -13.39232 -13.33624 -12.92932 -12.84231 -12.58667 -12.50382 -12.35982 -12.30200 -12.03627 -11.82730 -11.62658 -11.33637 -11.23866 -10.83540 -10.51587 -10.23892 -10.03606 -9.65807 -8.88158 -7.87927 -5.21439 -0.99685 -0.14862 0.93639 1.02577 1.44316 1.49689 1.54975 1.67647 1.86742 2.49592 2.53671 2.60401 3.13368 3.20386 3.31949 3.37929 3.46096 3.67141 3.90123 4.02535 4.13155 4.23308 4.25991 4.30109 4.36174 4.41081 4.48361 4.55956 4.62353 4.67409 4.77628 4.80712 4.85097 4.97744 5.01706 5.09567 5.13337 5.22753 5.40754 5.48260 5.53422 5.73852 5.94185 6.35058 6.45578 6.91824 7.08128 7.11715 7.63338 8.60051 9.30462 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.022529 B = 0.002874 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.556004 B = 9741.735159 C =10435.336656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.593 5.593 3 C 0.131 3.869 4 C 0.138 3.862 5 H 0.067 0.933 6 C -0.138 4.138 7 C 0.161 3.839 8 N -0.627 5.627 9 C -0.228 4.228 10 H 0.092 0.908 11 C -0.076 4.076 12 N -0.960 5.960 13 Si 0.981 3.019 14 H -0.278 1.278 15 H -0.298 1.298 16 H -0.269 1.269 17 C 0.542 3.458 18 O -0.556 6.556 19 C -0.039 4.039 20 C -0.125 4.125 21 C 0.174 3.826 22 N -0.459 5.459 23 C 0.198 3.802 24 C -0.029 4.029 25 N -0.278 5.278 26 N -0.029 5.029 27 N -0.299 5.299 28 C 0.078 3.922 29 H 0.107 0.893 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.025 0.975 37 H 0.021 0.979 38 H 0.246 0.754 39 H 0.217 0.783 40 H 0.243 0.757 41 H 0.110 0.890 42 H 0.119 0.881 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.808 -22.702 8.640 33.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.325 5.325 3 C 0.007 3.993 4 C 0.031 3.969 5 H 0.084 0.916 6 C -0.176 4.176 7 C 0.035 3.965 8 N -0.353 5.353 9 C -0.356 4.356 10 H 0.110 0.890 11 C -0.268 4.268 12 N -0.609 5.609 13 Si 0.809 3.191 14 H -0.204 1.204 15 H -0.225 1.225 16 H -0.195 1.195 17 C 0.330 3.670 18 O -0.434 6.434 19 C -0.055 4.055 20 C -0.147 4.147 21 C 0.001 3.999 22 N -0.172 5.172 23 C -0.044 4.044 24 C -0.160 4.160 25 N -0.151 5.151 26 N -0.010 5.010 27 N -0.101 5.101 28 C -0.060 4.060 29 H 0.125 0.875 30 H 0.102 0.898 31 H 0.122 0.878 32 H 0.117 0.883 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.044 0.956 37 H 0.039 0.961 38 H 0.055 0.945 39 H 0.233 0.767 40 H 0.258 0.742 41 H 0.128 0.872 42 H 0.137 0.863 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -20.945 -23.589 7.975 32.538 hybrid contribution 0.908 1.796 0.080 2.014 sum -20.037 -21.793 8.055 30.681 Atomic orbital electron populations 1.22970 0.76367 1.05630 1.04776 1.47683 1.08910 1.04128 1.71797 1.21448 0.97031 0.84100 0.96742 1.22669 0.92050 0.87436 0.94711 0.91601 1.23553 0.99211 0.95976 0.98877 1.21992 0.97214 0.88783 0.88512 1.46247 1.34273 1.33163 1.21658 1.19431 1.15237 1.02335 0.98570 0.89002 1.25733 1.00558 1.02438 0.98062 1.70051 1.30550 1.41327 1.19011 0.85117 0.77639 0.79004 0.77386 1.20418 1.22494 1.19508 1.18474 0.86936 0.84207 0.77367 1.90862 1.15656 1.87221 1.49615 1.19614 0.95891 0.90170 0.99820 1.23724 0.91042 1.03421 0.96554 1.23972 1.00917 0.84171 0.90890 1.66462 1.06645 1.33574 1.10556 1.19925 0.93874 0.87464 1.03093 1.20557 0.93989 0.96143 1.05315 1.75477 1.19691 1.03584 1.16314 1.78158 1.05278 1.03035 1.14557 1.47501 1.10007 1.11528 1.41073 1.22773 1.05464 0.71013 1.06713 0.87542 0.89773 0.87762 0.88321 0.92835 0.91721 0.91841 0.95631 0.96071 0.94495 0.76721 0.74153 0.87162 0.86298 0.86011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 8.76 127.77 1.12 1.63 16 2 N -0.59 -15.65 2.77 -850.16 -2.36 -18.01 16 3 C 0.13 4.57 5.43 86.38 0.47 5.04 16 4 C 0.14 5.72 4.59 45.09 0.21 5.93 16 5 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 6 C -0.14 -6.25 7.20 31.25 0.22 -6.02 16 7 C 0.16 8.69 7.39 86.48 0.64 9.32 16 8 N -0.63 -34.01 3.57 -694.20 -2.48 -36.49 16 9 C -0.23 -13.15 10.51 84.03 0.88 -12.26 16 10 H 0.09 4.89 7.83 -2.91 -0.02 4.87 16 11 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 12 N -0.96 -61.90 11.53 21.65 0.25 -61.65 16 13 Si 0.98 47.58 29.55 68.60 2.03 49.61 16 14 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 15 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 16 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 17 C 0.54 17.80 7.10 86.79 0.62 18.42 16 18 O -0.56 -25.17 14.28 -3.86 -0.06 -25.23 16 19 C -0.04 -0.98 5.57 -19.79 -0.11 -1.09 16 20 C -0.12 -1.37 7.62 22.65 0.17 -1.20 16 21 C 0.17 1.31 11.14 84.82 0.94 2.26 16 22 N -0.46 -7.15 10.35 -193.09 -2.00 -9.15 16 23 C 0.20 4.60 8.08 134.17 1.08 5.68 16 24 C -0.03 -0.89 6.97 40.06 0.28 -0.61 16 25 N -0.28 -10.36 12.16 -51.93 -0.63 -10.99 16 26 N -0.03 -0.89 13.07 37.02 0.48 -0.41 16 27 N -0.30 -6.60 3.80 -366.61 -1.39 -7.99 16 28 C 0.08 0.71 11.41 127.77 1.46 2.17 16 29 H 0.11 0.45 7.32 -2.39 -0.02 0.43 16 30 H 0.08 0.97 8.12 -2.39 -0.02 0.95 16 31 H 0.10 0.82 4.87 -2.39 -0.01 0.81 16 32 H 0.10 2.90 8.11 -2.39 -0.02 2.88 16 33 H 0.05 2.35 7.31 -2.39 -0.02 2.33 16 34 H 0.06 3.31 6.31 -2.39 -0.02 3.29 16 35 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.03 1.55 7.41 -2.38 -0.02 1.54 16 37 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.25 15.46 8.31 -92.72 -0.77 14.68 16 39 H 0.22 0.51 4.50 -2.91 -0.01 0.50 16 40 H 0.24 -1.11 8.06 -2.91 -0.02 -1.13 16 41 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -97.20 356.67 3.36 -93.84 By element: Atomic # 1 Polarization: 0.21 SS G_CDS: 1.06 Total: 1.27 kcal Atomic # 6 Polarization: 16.74 SS G_CDS: 8.45 Total: 25.20 kcal Atomic # 7 Polarization: -136.56 SS G_CDS: -8.13 Total: -144.69 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.06 Total: -25.23 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 2.03 Total: 49.61 kcal Total: -97.20 3.36 -93.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085786350.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 257.697 kcal (2) G-P(sol) polarization free energy of solvation -97.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds