Wall clock time and date at job start Tue Mar 31 2020 04:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35685 * 120.48370 * 2 1 4 4 C 1.40176 * 119.27280 * 179.72911 * 3 2 1 5 5 N 1.31257 * 120.35254 * 0.24967 * 4 3 2 6 6 C 1.33984 * 120.88182 * 359.97438 * 5 4 3 7 7 N 1.32503 * 132.33685 * 179.97438 * 6 5 4 8 8 C 1.33468 * 109.75274 * 180.02562 * 7 6 5 9 9 C 1.48123 * 125.32740 * 180.02562 * 8 7 6 10 10 O 1.21525 * 120.00293 * 173.05991 * 9 8 7 11 11 N 1.34786 * 119.99901 * 353.05439 * 9 8 7 12 12 C 1.46503 * 119.99548 * 4.35116 * 11 9 8 13 13 C 1.46501 * 120.00132 * 184.34735 * 11 9 8 14 14 C 1.52998 * 109.46976 * 84.52006 * 13 11 9 15 15 H 1.09004 * 112.96482 * 292.08686 * 14 13 11 16 16 C 1.53943 * 113.77039 * 63.76704 * 14 13 11 17 17 C 1.53948 * 86.28805 * 137.90400 * 16 14 13 18 18 N 1.47576 * 113.76808 * 160.40913 * 14 13 11 19 19 C 1.36942 * 134.48975 * 41.06658 * 18 14 13 20 20 H 1.07999 * 120.00458 * 4.85959 * 19 18 14 21 21 C 1.38815 * 120.00034 * 184.85362 * 19 18 14 22 22 N 1.31621 * 119.99707 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00297 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46958 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47185 * 120.00366 * 23 21 19 26 26 H 1.48502 * 109.47420 * 240.00384 * 23 21 19 27 27 N 1.31990 * 109.35222 * 0.02562 * 8 7 6 28 28 N 1.36167 * 120.48898 * 180.22411 * 2 1 3 29 29 H 1.09001 * 109.47301 * 90.00573 * 1 2 3 30 30 H 1.09008 * 109.47195 * 209.99917 * 1 2 3 31 31 H 1.09000 * 109.47477 * 329.99766 * 1 2 3 32 32 H 1.08000 * 120.36492 * 0.02562 * 3 2 1 33 33 H 1.07996 * 119.82161 * 180.27699 * 4 3 2 34 34 H 1.09000 * 109.47291 * 83.98494 * 12 11 9 35 35 H 1.09001 * 109.46487 * 203.98879 * 12 11 9 36 36 H 1.08999 * 109.47176 * 323.98419 * 12 11 9 37 37 H 1.09001 * 109.46862 * 204.52035 * 13 11 9 38 38 H 1.08996 * 109.46799 * 324.52027 * 13 11 9 39 39 H 1.09000 * 113.74287 * 252.24958 * 16 14 13 40 40 H 1.08998 * 113.74259 * 23.45359 * 16 14 13 41 41 H 1.09005 * 113.76677 * 90.70070 * 17 16 14 42 42 H 1.08998 * 113.76611 * 221.97617 * 17 16 14 43 43 H 0.97006 * 120.00161 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1953 1.1693 0.0000 4 6 3.5967 1.1397 0.0058 5 7 4.2359 -0.0067 0.0062 6 6 3.5665 -1.1673 0.0017 7 7 3.9690 -2.4297 0.0005 8 6 2.9093 -3.2411 -0.0052 9 6 2.9639 -4.7213 -0.0076 10 8 1.9418 -5.3673 0.1143 11 7 4.1473 -5.3518 -0.1450 12 6 5.3889 -4.5760 -0.1962 13 6 4.1918 -6.8129 -0.2431 14 6 3.9534 -7.2341 -1.6945 15 1 2.9391 -7.0274 -2.0362 16 6 5.0457 -6.7542 -2.6673 17 6 4.9532 -8.1530 -3.3035 18 7 4.4174 -8.6011 -2.0010 19 6 4.3704 -9.8007 -1.3423 20 1 3.8401 -9.8818 -0.4050 21 6 5.0044 -10.9127 -1.8794 22 7 5.6511 -10.8139 -3.0215 23 14 4.9398 -12.5494 -0.9813 24 1 4.1558 -12.3964 0.2706 25 1 4.2920 -13.5652 -1.8495 26 1 6.3196 -12.9878 -0.6512 27 7 1.8050 -2.5182 -0.0085 28 7 2.1978 -1.1734 -0.0046 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3634 -0.8901 0.5139 31 1 -0.3634 0.8899 0.5139 32 1 1.6692 2.1125 0.0004 33 1 4.1534 2.0651 0.0104 34 1 5.7234 -4.3582 0.8181 35 1 6.1553 -5.1509 -0.7161 36 1 5.2118 -3.6416 -0.7288 37 1 5.1690 -7.1693 0.0829 38 1 3.4176 -7.2434 0.3921 39 1 4.7226 -5.9494 -3.3276 40 1 6.0028 -6.5511 -2.1869 41 1 4.2327 -8.2179 -4.1189 42 1 5.9213 -8.5856 -3.5560 43 1 6.0944 -11.5908 -3.3967 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085959066.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:39 Heat of formation + Delta-G solvation = 184.108228 kcal Electronic energy + Delta-G solvation = -27757.805327 eV Core-core repulsion = 23843.969495 eV Total energy + Delta-G solvation = -3913.835832 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.32746 -40.06839 -38.89719 -37.67420 -35.76447 -35.20113 -32.35662 -32.01668 -31.32961 -29.05430 -28.77290 -27.79962 -26.63476 -24.99111 -24.62258 -23.26869 -22.63086 -21.75506 -19.77115 -19.11580 -18.76214 -18.19164 -17.22388 -17.06846 -16.57868 -16.00123 -15.84227 -15.42029 -14.71930 -14.69131 -14.30666 -14.04076 -13.93213 -13.61466 -13.52061 -13.26502 -13.09502 -12.99436 -12.68204 -12.35217 -12.28453 -12.03969 -11.89402 -11.36653 -11.00177 -10.83298 -10.65841 -10.50704 -10.39921 -10.33625 -10.14908 -10.04416 -9.75108 -9.65627 -9.50862 -9.17710 -8.71570 -8.32959 -6.79859 -5.68889 -3.02258 -0.12549 0.19770 1.31664 1.56559 2.63365 2.80851 2.94936 3.28903 3.43995 3.49586 3.51980 3.54794 3.72051 4.10302 4.27593 4.51633 4.56140 4.69204 4.73278 4.79080 5.15815 5.23478 5.40147 5.41806 5.50249 5.58579 5.59641 5.66660 5.75002 5.79607 5.90146 6.01193 6.19683 6.30557 6.35480 6.52102 6.65473 6.77060 6.85720 6.95202 7.29358 7.34872 7.46987 7.55941 7.67345 8.06285 8.13891 9.12020 9.78382 10.68229 11.47369 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.028843 B = 0.002465 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.529882 B =11356.933390 C =11695.741255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.206 3.794 3 C -0.230 4.230 4 C 0.211 3.789 5 N -0.454 5.454 6 C 0.440 3.560 7 N -0.492 5.492 8 C 0.251 3.749 9 C 0.600 3.400 10 O -0.507 6.507 11 N -0.577 5.577 12 C 0.068 3.932 13 C 0.118 3.882 14 C 0.129 3.871 15 H 0.048 0.952 16 C -0.157 4.157 17 C 0.156 3.844 18 N -0.601 5.601 19 C -0.220 4.220 20 H 0.079 0.921 21 C -0.008 4.008 22 N -0.920 5.920 23 Si 0.910 3.090 24 H -0.279 1.279 25 H -0.291 1.291 26 H -0.290 1.290 27 N -0.269 5.269 28 N -0.328 5.328 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.175 0.825 33 H 0.193 0.807 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.047 0.953 40 H 0.074 0.926 41 H 0.023 0.977 42 H 0.078 0.922 43 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.495 30.814 5.897 31.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.088 3.912 3 C -0.255 4.255 4 C 0.025 3.975 5 N -0.169 5.169 6 C 0.081 3.919 7 N -0.227 5.227 8 C -0.032 4.032 9 C 0.380 3.620 10 O -0.380 6.380 11 N -0.309 5.309 12 C -0.074 4.074 13 C -0.005 4.005 14 C 0.021 3.979 15 H 0.066 0.934 16 C -0.196 4.196 17 C 0.031 3.969 18 N -0.328 5.328 19 C -0.347 4.347 20 H 0.097 0.903 21 C -0.205 4.205 22 N -0.568 5.568 23 Si 0.741 3.259 24 H -0.204 1.204 25 H -0.219 1.219 26 H -0.217 1.217 27 N -0.103 5.103 28 N -0.110 5.110 29 H 0.117 0.883 30 H 0.111 0.889 31 H 0.117 0.883 32 H 0.192 0.808 33 H 0.209 0.791 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.120 0.880 37 H 0.111 0.889 38 H 0.097 0.903 39 H 0.065 0.935 40 H 0.093 0.907 41 H 0.040 0.960 42 H 0.097 0.903 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.381 29.179 6.013 30.274 hybrid contribution -0.867 -0.516 0.335 1.063 sum -6.249 28.663 6.348 30.015 Atomic orbital electron populations 1.21110 0.86178 1.05747 1.05188 1.20976 0.96844 0.81943 0.91455 1.21835 0.95773 0.97904 1.10000 1.23637 0.91755 0.95827 0.86238 1.68086 1.36165 0.95018 1.17653 1.23055 0.78339 0.93981 0.96574 1.71244 1.27332 0.95930 1.28221 1.24395 0.85715 0.96952 0.96151 1.16423 0.84646 0.81764 0.79126 1.90863 1.33516 1.64573 1.49001 1.47644 1.05782 1.08195 1.69258 1.22377 0.85109 0.97339 1.02616 1.21984 1.03689 0.75535 0.99267 1.22547 0.96224 0.86941 0.92235 0.93433 1.23758 0.98682 0.98220 0.98911 1.22306 0.98817 0.87722 0.88081 1.46056 1.67304 1.02664 1.16732 1.19083 1.27567 0.85276 1.02805 0.90284 1.24774 1.00305 0.97945 0.97445 1.69837 1.38705 1.29056 1.19198 0.86070 0.77224 0.83896 0.78749 1.20430 1.21855 1.21748 1.78926 1.19330 0.82784 1.29231 1.49101 1.09222 1.06398 1.46231 0.88328 0.88938 0.88276 0.80768 0.79056 0.92496 0.90657 0.88004 0.88901 0.90275 0.93451 0.90703 0.95959 0.90347 0.93810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.53 10.13 36.00 0.36 -0.16 16 2 C 0.21 1.44 6.86 -81.58 -0.56 0.88 16 3 C -0.23 -0.79 9.72 -39.77 -0.39 -1.18 16 4 C 0.21 0.99 11.27 -17.07 -0.19 0.80 16 5 N -0.45 -4.57 10.48 -13.79 -0.14 -4.72 16 6 C 0.44 5.73 8.98 -323.05 -2.90 2.83 16 7 N -0.49 -7.42 7.64 -12.24 -0.09 -7.51 16 8 C 0.25 4.14 7.64 -156.79 -1.20 2.94 16 9 C 0.60 10.98 7.65 -12.20 -0.09 10.89 16 10 O -0.51 -10.80 16.72 5.34 0.09 -10.72 16 11 N -0.58 -9.81 2.76 -182.58 -0.50 -10.32 16 12 C 0.07 0.96 9.29 59.85 0.56 1.51 16 13 C 0.12 2.28 5.28 -4.04 -0.02 2.26 16 14 C 0.13 2.82 4.55 -66.87 -0.30 2.51 16 15 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 16 C -0.16 -3.14 7.28 -25.79 -0.19 -3.33 16 17 C 0.16 3.82 7.65 -2.85 -0.02 3.80 16 18 N -0.60 -15.85 3.58 -169.75 -0.61 -16.46 16 19 C -0.22 -6.28 10.51 -15.06 -0.16 -6.44 16 20 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 21 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 22 N -0.92 -27.80 11.32 55.49 0.63 -27.18 16 23 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 25 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 N -0.27 -4.18 12.68 32.02 0.41 -3.78 16 28 N -0.33 -3.94 3.91 -10.07 -0.04 -3.98 16 29 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.09 0.59 8.14 -51.92 -0.42 0.16 16 31 H 0.10 0.09 8.09 -51.93 -0.42 -0.33 16 32 H 0.17 -0.18 8.06 -52.49 -0.42 -0.60 16 33 H 0.19 0.00 8.06 -52.49 -0.42 -0.42 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 1.01 6.58 -51.93 -0.34 0.66 16 36 H 0.10 1.46 5.25 -51.93 -0.27 1.18 16 37 H 0.09 1.77 8.03 -51.93 -0.42 1.35 16 38 H 0.08 1.63 7.53 -51.93 -0.39 1.24 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 1.40 6.81 -51.93 -0.35 1.05 16 41 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 2.09 6.97 -51.93 -0.36 1.73 16 43 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 362.63 15.07 5.46 5.46 Total: -1.00 -37.82 362.63 -10.51 -48.34 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: -5.49 Total: -3.79 kcal Atomic # 6 Polarization: 22.17 SS G_CDS: -5.20 Total: 16.97 kcal Atomic # 7 Polarization: -73.57 SS G_CDS: -0.35 Total: -73.93 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.09 Total: -10.72 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -37.82 -10.51 -48.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085959066.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 232.444 kcal (2) G-P(sol) polarization free energy of solvation -37.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 194.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 184.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds