Wall clock time and date at job start Tue Mar 31 2020 05:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.40164 * 120.36352 * 2 1 4 4 N 1.31258 * 120.36018 * 179.97438 * 3 2 1 5 5 C 1.33989 * 120.87796 * 359.97438 * 4 3 2 6 6 N 1.32505 * 132.34631 * 180.36879 * 5 4 3 7 7 C 1.33464 * 109.75576 * 180.10795 * 6 5 4 8 8 C 1.48122 * 125.32706 * 179.81929 * 7 6 5 9 9 O 1.21521 * 120.00682 * 179.69060 * 8 7 6 10 10 N 1.34775 * 119.99956 * 359.69313 * 8 7 6 11 11 C 1.46501 * 120.00523 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47226 * 180.02562 * 11 10 8 13 13 H 1.08992 * 112.84988 * 43.80701 * 12 11 10 14 14 C 1.53788 * 113.61080 * 175.00093 * 12 11 10 15 15 C 1.53782 * 87.08008 * 139.98008 * 14 12 11 16 16 H 1.08999 * 113.61144 * 89.19617 * 15 14 12 17 17 N 1.46492 * 113.61530 * 220.01397 * 15 14 12 18 18 C 1.36935 * 120.00376 * 205.00073 * 17 15 14 19 19 H 1.08003 * 119.99724 * 0.02562 * 18 17 15 20 20 C 1.38810 * 120.00063 * 180.02562 * 18 17 15 21 21 N 1.31622 * 119.99887 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00212 * 359.97438 * 20 18 17 23 23 H 1.48506 * 109.47297 * 89.99941 * 22 20 18 24 24 H 1.48503 * 109.47261 * 330.00122 * 22 20 18 25 25 H 1.48500 * 109.47454 * 210.00115 * 22 20 18 26 26 C 1.53773 * 113.61531 * 272.49359 * 12 11 10 27 27 N 1.31991 * 109.35323 * 359.55141 * 7 6 5 28 28 N 1.36870 * 120.22122 * 0.02562 * 5 4 3 29 29 C 1.35682 * 120.36429 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.47147 * 270.02144 * 1 2 3 31 31 H 1.08995 * 109.46822 * 30.02218 * 1 2 3 32 32 H 1.08996 * 109.47016 * 150.02382 * 1 2 3 33 33 H 1.08003 * 119.82305 * 359.97438 * 3 2 1 34 34 H 0.97004 * 119.99648 * 0.02562 * 10 8 7 35 35 H 1.08998 * 109.47108 * 59.99592 * 11 10 8 36 36 H 1.09005 * 109.46764 * 299.99957 * 11 10 8 37 37 H 1.08993 * 113.61548 * 25.42971 * 14 12 11 38 38 H 1.09007 * 113.61090 * 254.52924 * 14 12 11 39 39 H 0.97009 * 119.99477 * 25.00658 * 17 15 14 40 40 H 0.97006 * 119.99732 * 180.02562 * 21 20 18 41 41 H 1.09003 * 113.61146 * 105.47217 * 26 12 11 42 42 H 1.09001 * 113.61852 * 334.57180 * 26 12 11 43 43 H 1.08003 * 120.48250 * 0.03644 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2156 1.2094 0.0000 4 7 3.5282 1.2093 0.0005 5 6 4.2157 0.0593 0.0015 6 7 5.5143 -0.2042 0.0085 7 6 5.7066 -1.5249 0.0038 8 6 7.0259 -2.1984 0.0053 9 8 7.0887 -3.4120 0.0063 10 7 8.1567 -1.4652 0.0056 11 6 9.4616 -2.1311 0.0076 12 6 10.5716 -1.0781 0.0081 13 1 10.3790 -0.2605 0.7026 14 6 11.9845 -1.6725 0.1330 15 6 12.4318 -0.6232 -0.8984 16 1 12.7495 0.3193 -0.4526 17 7 13.3873 -1.1378 -1.8824 18 6 14.2482 -0.2805 -2.5141 19 1 14.2230 0.7750 -2.2866 20 6 15.1532 -0.7680 -3.4469 21 7 15.9810 0.0559 -4.0537 22 14 15.1972 -2.5937 -3.8400 23 1 14.2666 -2.8813 -4.9609 24 1 14.7837 -3.3681 -2.6422 25 1 16.5764 -2.9832 -4.2293 26 6 10.9780 -0.6107 -1.3994 27 7 4.5373 -2.1372 0.0035 28 7 3.5542 -1.1389 0.0016 29 6 2.1929 -1.1707 0.0005 30 1 -0.3634 0.0004 1.0277 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3633 -0.8902 -0.5134 33 1 1.6786 2.1465 -0.0004 34 1 8.1066 -0.4964 0.0052 35 1 9.5525 -2.7550 -0.8816 36 1 9.5508 -2.7529 0.8984 37 1 12.0599 -2.6985 -0.2270 38 1 12.4307 -1.5346 1.1180 39 1 13.4101 -2.0859 -2.0865 40 1 16.6132 -0.2848 -4.7059 41 1 10.6116 0.3844 -1.6516 42 1 10.7783 -1.3464 -2.1785 43 1 1.6668 -2.1139 0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086117049.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:40 Heat of formation + Delta-G solvation = 140.163343 kcal Electronic energy + Delta-G solvation = -26226.662894 eV Core-core repulsion = 22310.921469 eV Total energy + Delta-G solvation = -3915.741425 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.48573 -40.23512 -39.27444 -38.46528 -35.34424 -34.90898 -33.73235 -33.28256 -31.35749 -30.76924 -28.73306 -27.38541 -25.85937 -25.17367 -24.36485 -23.48652 -23.24206 -21.00100 -20.73300 -19.47895 -19.07359 -18.60611 -17.56492 -17.38968 -17.28691 -16.41304 -16.05040 -15.55495 -15.05427 -14.84544 -14.62267 -14.37073 -14.24476 -13.94945 -13.75954 -13.40271 -13.27199 -13.11136 -13.03846 -12.66283 -12.36881 -12.20761 -11.94958 -11.62217 -11.55851 -10.90400 -10.88467 -10.72562 -10.61747 -10.45744 -10.20726 -10.14417 -10.10405 -9.81911 -9.53455 -9.35964 -9.20538 -8.87010 -7.24611 -5.76208 -3.11561 -0.28745 -0.01092 1.14253 1.32062 2.42391 2.59359 2.79501 3.03661 3.39538 3.42757 3.47236 3.47687 3.58832 3.90559 4.01562 4.24892 4.51317 4.60341 4.77341 4.85634 4.87835 4.92427 5.05880 5.12444 5.20581 5.37533 5.40931 5.43336 5.44248 5.50461 5.64987 5.71036 5.81169 5.83665 6.09276 6.20636 6.24593 6.32637 6.55164 6.70234 6.74011 7.00675 7.03716 7.35134 7.84031 8.00609 8.43648 9.21639 9.94390 10.14209 11.42008 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.024574 B = 0.001874 C = 0.001827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.143163 B =14939.207651 C =15321.350252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.183 4.183 3 C 0.214 3.786 4 N -0.443 5.443 5 C 0.439 3.561 6 N -0.496 5.496 7 C 0.243 3.757 8 C 0.607 3.393 9 O -0.509 6.509 10 N -0.694 5.694 11 C 0.131 3.869 12 C -0.128 4.128 13 H 0.095 0.905 14 C -0.144 4.144 15 C 0.172 3.828 16 H 0.085 0.915 17 N -0.737 5.737 18 C -0.248 4.248 19 H 0.091 0.909 20 C 0.004 3.996 21 N -0.933 5.933 22 Si 0.884 3.116 23 H -0.284 1.284 24 H -0.276 1.276 25 H -0.291 1.291 26 C -0.162 4.162 27 N -0.268 5.268 28 N -0.324 5.324 29 C 0.166 3.834 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.194 0.806 34 H 0.415 0.585 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.362 0.638 40 H 0.259 0.741 41 H 0.061 0.939 42 H 0.078 0.922 43 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.431 0.624 11.952 38.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.190 4.190 3 C 0.026 3.974 4 N -0.157 5.157 5 C 0.078 3.922 6 N -0.230 5.230 7 C -0.041 4.041 8 C 0.387 3.613 9 O -0.381 6.381 10 N -0.346 5.346 11 C 0.009 3.991 12 C -0.147 4.147 13 H 0.113 0.887 14 C -0.184 4.184 15 C 0.060 3.940 16 H 0.103 0.897 17 N -0.377 5.377 18 C -0.377 4.377 19 H 0.109 0.891 20 C -0.191 4.191 21 N -0.581 5.581 22 Si 0.714 3.286 23 H -0.211 1.211 24 H -0.203 1.203 25 H -0.217 1.217 26 C -0.203 4.203 27 N -0.102 5.102 28 N -0.104 5.104 29 C 0.029 3.971 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.211 0.789 34 H 0.251 0.749 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.195 0.805 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -35.066 0.005 11.855 37.016 hybrid contribution -0.727 -1.375 -0.438 1.616 sum -35.793 -1.370 11.418 37.595 Atomic orbital electron populations 1.20663 0.86811 1.04493 1.03739 1.20703 0.99519 0.91979 1.06844 1.23680 0.88034 0.99059 0.86611 1.68117 1.08757 1.22230 1.16548 1.22677 0.89317 0.82889 0.97286 1.70839 1.10981 1.13632 1.27573 1.24264 0.95047 0.87740 0.97081 1.16306 0.80835 0.85847 0.78362 1.90867 1.85988 1.12352 1.48877 1.45803 1.04978 1.11346 1.72507 1.21625 0.79400 0.95375 1.02723 1.22664 0.93690 0.98108 1.00230 0.88714 1.23475 0.93720 1.00464 1.00730 1.21508 0.87621 0.95757 0.89093 0.89720 1.42761 1.41237 1.06503 1.47164 1.19149 1.10261 0.92017 1.16318 0.89107 1.24694 0.98212 0.97175 0.99066 1.69708 1.24236 1.33475 1.30652 0.86555 0.77057 0.86732 0.78226 1.21072 1.20256 1.21726 1.23930 1.00721 1.01058 0.94541 1.78964 0.95131 1.06972 1.29091 1.49002 1.07111 1.08782 1.45533 1.22069 0.79220 1.01756 0.94050 0.89881 0.89747 0.90408 0.78924 0.74910 0.90604 0.90959 0.90258 0.91510 0.80457 0.93065 0.92051 0.90383 0.79750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.10 10.03 36.01 0.36 0.46 16 2 C -0.18 -0.48 5.87 -104.81 -0.61 -1.10 16 3 C 0.21 0.84 10.96 -17.07 -0.19 0.66 16 4 N -0.44 -4.08 10.48 -13.79 -0.14 -4.22 16 5 C 0.44 5.20 8.99 -323.04 -2.90 2.30 16 6 N -0.50 -6.82 10.89 -12.23 -0.13 -6.95 16 7 C 0.24 3.45 7.92 -156.79 -1.24 2.21 16 8 C 0.61 8.93 7.84 -12.20 -0.10 8.83 16 9 O -0.51 -8.85 17.07 5.35 0.09 -8.76 16 10 N -0.69 -8.77 5.55 -61.16 -0.34 -9.11 16 11 C 0.13 1.67 5.51 -4.04 -0.02 1.64 16 12 C -0.13 -1.64 3.76 -89.81 -0.34 -1.98 16 13 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 14 C -0.14 -2.14 7.39 -25.91 -0.19 -2.33 16 15 C 0.17 3.20 4.48 -67.12 -0.30 2.90 16 16 H 0.08 1.60 8.10 -51.93 -0.42 1.18 16 17 N -0.74 -17.40 5.20 -52.64 -0.27 -17.68 16 18 C -0.25 -7.01 10.45 -15.06 -0.16 -7.16 16 19 H 0.09 2.74 8.06 -52.48 -0.42 2.31 16 20 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 21 N -0.93 -29.50 13.97 55.49 0.78 -28.73 16 22 Si 0.88 22.36 27.73 -169.99 -4.71 17.65 16 23 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16 25 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 26 C -0.16 -2.59 7.43 -25.92 -0.19 -2.78 16 27 N -0.27 -3.66 12.78 32.02 0.41 -3.25 16 28 N -0.32 -3.39 3.91 -13.80 -0.05 -3.44 16 29 C 0.17 0.87 10.97 -16.54 -0.18 0.68 16 30 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 31 H 0.08 -0.19 8.10 -51.93 -0.42 -0.61 16 32 H 0.08 -0.12 8.09 -51.93 -0.42 -0.54 16 33 H 0.19 -0.09 8.06 -52.48 -0.42 -0.51 16 34 H 0.41 4.74 8.14 -40.82 -0.33 4.41 16 35 H 0.08 1.05 7.84 -51.93 -0.41 0.64 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.08 1.19 8.08 -51.93 -0.42 0.77 16 38 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 39 H 0.36 8.44 5.79 -40.82 -0.24 8.20 16 40 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.08 1.33 7.90 -51.93 -0.41 0.92 16 43 H 0.19 0.39 8.06 -52.48 -0.42 -0.04 16 LS Contribution 370.65 15.07 5.59 5.59 Total: -1.00 -38.19 370.65 -10.58 -48.77 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -5.62 Total: 5.79 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: -6.16 Total: 4.35 kcal Atomic # 7 Polarization: -73.62 SS G_CDS: 0.24 Total: -73.38 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.09 Total: -8.76 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.71 Total: 17.65 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -38.19 -10.58 -48.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086117049.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.929 kcal (2) G-P(sol) polarization free energy of solvation -38.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds