Wall clock time and date at job start Tue Mar 31 2020 05:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40183 * 126.58930 * 2 1 4 4 N 1.28663 * 109.51150 * 179.97438 * 3 2 1 5 5 C 1.35335 * 109.99901 * 359.97438 * 4 3 2 6 6 C 1.39908 * 133.27053 * 179.97438 * 5 4 3 7 7 C 1.39435 * 118.09358 * 179.68900 * 6 5 4 8 8 C 1.47719 * 120.34782 * 180.27264 * 7 6 5 9 9 O 1.21571 * 120.00423 * 0.28509 * 8 7 6 10 10 N 1.34782 * 119.99960 * 180.29061 * 8 7 6 11 11 C 1.46494 * 119.99990 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.46947 * 179.97438 * 11 10 8 13 13 H 1.08999 * 112.85012 * 316.19255 * 12 11 10 14 14 C 1.53779 * 113.61820 * 87.50113 * 12 11 10 15 15 C 1.53779 * 87.08562 * 139.97932 * 14 12 11 16 16 H 1.09005 * 113.68573 * 89.12663 * 15 14 12 17 17 N 1.46497 * 113.61856 * 220.01995 * 15 14 12 18 18 C 1.36937 * 120.00044 * 252.49736 * 17 15 14 19 19 H 1.08005 * 119.99998 * 0.02562 * 18 17 15 20 20 C 1.38812 * 119.99917 * 179.97438 * 18 17 15 21 21 N 1.31621 * 119.99926 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99846 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47137 * 90.00112 * 22 20 18 24 24 H 1.48499 * 109.46914 * 209.99820 * 22 20 18 25 25 H 1.48493 * 109.47007 * 329.99886 * 22 20 18 26 26 C 1.53783 * 113.61668 * 185.00098 * 12 11 10 27 27 C 1.40114 * 119.29801 * 0.55700 * 7 6 5 28 28 N 1.31265 * 121.14834 * 359.45848 * 27 7 6 29 29 C 1.32713 * 121.80105 * 0.25627 * 28 27 7 30 30 H 1.09004 * 109.47252 * 269.99968 * 1 2 3 31 31 H 1.09004 * 109.47285 * 30.00096 * 1 2 3 32 32 H 1.09002 * 109.47347 * 149.99963 * 1 2 3 33 33 H 1.08001 * 120.95085 * 0.02562 * 6 5 4 34 34 H 0.97001 * 119.99623 * 359.97438 * 10 8 7 35 35 H 1.08995 * 109.47202 * 299.99246 * 11 10 8 36 36 H 1.08999 * 109.47270 * 59.99715 * 11 10 8 37 37 H 1.08997 * 113.61686 * 254.53316 * 14 12 11 38 38 H 1.09008 * 113.61313 * 25.43208 * 14 12 11 39 39 H 0.96999 * 119.99726 * 72.49856 * 17 15 14 40 40 H 0.96996 * 120.00068 * 179.97438 * 21 20 18 41 41 H 1.09004 * 113.60815 * 334.56483 * 26 12 11 42 42 H 1.08995 * 113.61784 * 105.38250 * 26 12 11 43 43 H 1.08002 * 119.42781 * 179.74233 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3006 1.1256 0.0000 4 7 3.5305 0.7477 0.0005 5 6 3.5995 -0.6039 0.0015 6 6 4.6657 -1.5097 0.0019 7 6 4.3698 -2.8722 0.0096 8 6 5.4571 -3.8722 0.0165 9 8 6.6172 -3.5087 0.0207 10 7 5.1630 -5.1875 0.0180 11 6 6.2413 -6.1791 0.0242 12 6 5.6402 -7.5861 0.0254 13 1 4.8048 -7.6889 0.7180 14 6 5.3467 -8.1319 -1.3820 15 6 5.8630 -9.4898 -0.8777 16 1 5.0886 -10.1149 -0.4329 17 7 6.6802 -10.2081 -1.8586 18 6 6.1775 -11.3144 -2.4899 19 1 5.1783 -11.6572 -2.2649 20 6 6.9517 -11.9947 -3.4198 21 7 8.1688 -11.5761 -3.6951 22 14 6.2656 -13.5035 -4.2814 23 1 5.5746 -13.0896 -5.5290 24 1 7.3764 -14.4308 -4.6151 25 1 5.3005 -14.1893 -3.3851 26 6 6.6885 -8.7038 0.1547 27 6 3.0302 -3.2829 0.0047 28 7 2.0517 -2.4079 0.0037 29 6 2.2823 -1.1010 0.0021 30 1 -0.3634 0.0000 1.0277 31 1 -0.3634 0.8900 -0.5139 32 1 -0.3634 -0.8900 -0.5138 33 1 5.6887 -1.1634 0.0019 34 1 4.2373 -5.4775 0.0150 35 1 6.8599 -6.0488 -0.8636 36 1 6.8531 -6.0450 0.9163 37 1 4.2870 -8.1349 -1.6370 38 1 5.9690 -7.6899 -2.1602 39 1 7.5775 -9.9000 -2.0609 40 1 8.7100 -12.0517 -4.3445 41 1 7.6776 -8.4181 -0.2034 42 1 6.7130 -9.1676 1.1407 43 1 2.7985 -4.3378 0.0065 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086150905.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:27 Heat of formation + Delta-G solvation = 128.100540 kcal Electronic energy + Delta-G solvation = -26259.961737 eV Core-core repulsion = 22343.697229 eV Total energy + Delta-G solvation = -3916.264508 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.84816 -40.35823 -38.90381 -38.26395 -35.40836 -34.90550 -33.38154 -32.68356 -31.39192 -30.23061 -28.32272 -27.54627 -25.27539 -25.13164 -24.62396 -23.72581 -21.98609 -21.31314 -21.15982 -19.36387 -18.81495 -18.36353 -17.49199 -17.07213 -16.97989 -16.52828 -15.87447 -15.53630 -14.96059 -14.74548 -14.50791 -14.24759 -14.11046 -13.79841 -13.60994 -13.58298 -13.50861 -13.24218 -12.99285 -12.93485 -12.20007 -11.96711 -11.86817 -11.51105 -11.42583 -11.27605 -10.86555 -10.70366 -10.50870 -10.23172 -10.14664 -9.93945 -9.87312 -9.80370 -9.55055 -9.47110 -9.14209 -8.89481 -6.98973 -5.80602 -3.09608 -0.30204 0.11954 1.24830 1.56289 2.40952 2.75442 3.21959 3.22658 3.40986 3.46134 3.48021 3.59788 3.75970 4.01111 4.09023 4.35479 4.53611 4.55920 4.67694 4.83406 4.85192 4.90273 4.95008 5.16302 5.21101 5.30467 5.43398 5.44927 5.55424 5.75826 5.78393 5.81901 5.88437 6.05994 6.13248 6.25834 6.30982 6.36617 6.55059 6.77846 6.92252 7.07283 7.22624 7.29079 7.66638 7.91645 8.37915 9.49013 10.07196 10.41080 11.41667 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.023062 B = 0.001839 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.809463 B =15223.837306 C =15814.787350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.385 5.385 3 N 0.012 4.988 4 N -0.195 5.195 5 C -0.074 4.074 6 C 0.084 3.916 7 C -0.206 4.206 8 C 0.566 3.434 9 O -0.531 6.531 10 N -0.717 5.717 11 C 0.132 3.868 12 C -0.128 4.128 13 H 0.089 0.911 14 C -0.162 4.162 15 C 0.165 3.835 16 H 0.075 0.925 17 N -0.713 5.713 18 C -0.245 4.245 19 H 0.071 0.929 20 C -0.013 4.013 21 N -0.931 5.931 22 Si 0.907 3.093 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C -0.142 4.142 27 C 0.212 3.788 28 N -0.485 5.485 29 C 0.287 3.713 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.167 0.833 34 H 0.399 0.601 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.079 0.921 39 H 0.385 0.615 40 H 0.256 0.744 41 H 0.081 0.919 42 H 0.062 0.938 43 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.461 21.973 10.896 28.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.180 5.180 3 N 0.030 4.970 4 N -0.075 5.075 5 C -0.200 4.200 6 C 0.053 3.947 7 C -0.215 4.215 8 C 0.352 3.648 9 O -0.408 6.408 10 N -0.368 5.368 11 C 0.009 3.991 12 C -0.148 4.148 13 H 0.108 0.892 14 C -0.203 4.203 15 C 0.053 3.947 16 H 0.093 0.907 17 N -0.350 5.350 18 C -0.376 4.376 19 H 0.089 0.911 20 C -0.209 4.209 21 N -0.579 5.579 22 Si 0.738 3.262 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C -0.182 4.182 27 C 0.038 3.962 28 N -0.199 5.199 29 C 0.043 3.957 30 H 0.104 0.896 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.184 0.816 34 H 0.234 0.766 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.219 0.781 40 H 0.066 0.934 41 H 0.099 0.901 42 H 0.081 0.919 43 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -15.654 23.393 10.809 30.151 hybrid contribution -0.032 -1.544 -0.630 1.667 sum -15.685 21.849 10.180 28.759 Atomic orbital electron populations 1.22127 0.71708 1.05673 1.04554 1.50027 1.08356 1.02395 1.57259 1.81788 0.94001 1.06240 1.14944 1.74897 1.11191 1.09972 1.11487 1.20386 0.94274 0.91450 1.13885 1.21096 0.99294 0.89534 0.84747 1.20790 0.95311 0.94333 1.11097 1.17689 0.87811 0.82277 0.77063 1.90830 1.20090 1.80257 1.49620 1.45939 1.10966 1.05270 1.74595 1.21534 0.88896 0.86074 1.02594 1.22660 0.99941 0.92168 0.99995 0.89239 1.23969 1.00781 1.00977 0.94565 1.21518 0.93352 0.90104 0.89695 0.90658 1.42412 1.15987 1.31157 1.45491 1.19296 0.98517 1.03052 1.16740 0.91095 1.24777 0.96314 0.99670 1.00176 1.69658 1.09082 1.41904 1.37290 0.86190 0.77676 0.82670 0.79641 1.21711 1.21764 1.20743 1.23453 0.98385 0.95908 1.00446 1.23080 0.86399 0.98925 0.87792 1.66641 1.36799 0.98510 1.17967 1.19555 0.88961 0.89007 0.98128 0.89625 0.88211 0.88210 0.81578 0.76566 0.90755 0.91299 0.92705 0.90266 0.78051 0.93432 0.90052 0.91947 0.80394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.39 11.54 59.85 0.69 1.08 16 2 N -0.38 -3.29 4.10 -67.18 -0.28 -3.56 16 3 N 0.01 0.12 13.71 60.35 0.83 0.95 16 4 N -0.20 -2.23 12.40 32.17 0.40 -1.83 16 5 C -0.07 -0.78 7.27 -84.73 -0.62 -1.40 16 6 C 0.08 0.80 9.75 -38.51 -0.38 0.43 16 7 C -0.21 -1.82 5.88 -104.87 -0.62 -2.44 16 8 C 0.57 6.11 7.77 -12.38 -0.10 6.01 16 9 O -0.53 -7.76 16.39 5.30 0.09 -7.68 16 10 N -0.72 -6.53 5.51 -61.29 -0.34 -6.87 16 11 C 0.13 1.48 5.51 -4.04 -0.02 1.46 16 12 C -0.13 -1.49 3.75 -89.81 -0.34 -1.83 16 13 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 14 C -0.16 -2.43 7.43 -25.92 -0.19 -2.62 16 15 C 0.17 3.01 4.48 -67.12 -0.30 2.71 16 16 H 0.08 1.36 8.10 -51.93 -0.42 0.94 16 17 N -0.71 -17.19 5.40 -52.64 -0.28 -17.47 16 18 C -0.24 -6.61 9.97 -15.06 -0.15 -6.76 16 19 H 0.07 1.85 7.83 -52.48 -0.41 1.43 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -27.73 13.06 55.49 0.72 -27.01 16 22 Si 0.91 21.97 29.55 -169.99 -5.02 16.94 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 C -0.14 -2.08 7.39 -25.92 -0.19 -2.27 16 27 C 0.21 1.51 10.69 -17.09 -0.18 1.33 16 28 N -0.49 -4.23 10.37 -12.03 -0.12 -4.36 16 29 C 0.29 2.81 8.05 -155.93 -1.26 1.55 16 30 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.17 1.49 7.71 -52.49 -0.40 1.09 16 34 H 0.40 2.44 6.51 -40.82 -0.27 2.18 16 35 H 0.07 0.98 7.84 -51.93 -0.41 0.57 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.08 1.34 7.90 -51.92 -0.41 0.93 16 39 H 0.39 9.95 7.92 -40.82 -0.32 9.63 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.08 1.26 8.08 -51.93 -0.42 0.85 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.18 0.65 6.39 -52.49 -0.34 0.32 16 LS Contribution 370.40 15.07 5.58 5.58 Total: -1.00 -34.41 370.40 -7.66 -42.07 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -5.49 Total: 6.46 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -3.74 Total: -3.22 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: 0.93 Total: -60.16 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: 0.09 Total: -7.68 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.41 -7.66 -42.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086150905.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.166 kcal (2) G-P(sol) polarization free energy of solvation -34.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds