Wall clock time and date at job start Tue Mar 31 2020 05:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 N 1.28785 * 125.86651 * 2 1 4 4 N 1.28695 * 111.75353 * 179.97438 * 3 2 1 5 5 C 1.34391 * 109.15330 * 0.02562 * 4 3 2 6 6 C 1.37213 * 125.86975 * 179.97438 * 2 1 3 7 7 N 1.32209 * 134.67163 * 0.03930 * 6 2 1 8 8 C 1.31590 * 121.86345 * 180.02562 * 7 6 2 9 9 C 1.38617 * 121.63574 * 359.77057 * 8 7 6 10 10 C 1.39451 * 119.37790 * 0.46906 * 9 8 7 11 11 C 1.47869 * 121.11850 * 179.80992 * 10 9 8 12 12 O 1.21544 * 120.00240 * 179.71672 * 11 10 9 13 13 N 1.34781 * 119.99824 * 359.71188 * 11 10 9 14 14 C 1.46495 * 119.99879 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47130 * 180.02562 * 14 13 11 16 16 H 1.09006 * 112.84896 * 43.80225 * 15 14 13 17 17 C 1.53781 * 113.61655 * 174.99966 * 15 14 13 18 18 C 1.53785 * 87.07933 * 140.06445 * 17 15 14 19 19 H 1.08998 * 113.61615 * 89.20262 * 18 17 15 20 20 N 1.46500 * 113.61099 * 220.01813 * 18 17 15 21 21 C 1.36943 * 119.99878 * 204.99912 * 20 18 17 22 22 H 1.07996 * 119.99698 * 0.02562 * 21 20 18 23 23 C 1.38809 * 119.99902 * 179.97438 * 21 20 18 24 24 N 1.31620 * 120.00319 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00011 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47297 * 59.99967 * 25 23 21 27 27 H 1.48503 * 109.47261 * 300.00148 * 25 23 21 28 28 H 1.48500 * 109.47454 * 180.02562 * 25 23 21 29 29 C 1.53781 * 87.08374 * 334.56649 * 18 17 15 30 30 H 1.09001 * 109.46879 * 90.02492 * 1 2 3 31 31 H 1.08991 * 109.46890 * 210.02882 * 1 2 3 32 32 H 1.08995 * 109.46805 * 330.02986 * 1 2 3 33 33 H 1.07999 * 119.17663 * 179.97438 * 8 7 6 34 34 H 1.07997 * 120.30926 * 180.25035 * 9 8 7 35 35 H 0.97001 * 119.99694 * 359.97438 * 13 11 10 36 36 H 1.09000 * 109.47036 * 60.00316 * 14 13 11 37 37 H 1.09000 * 109.47519 * 300.00102 * 14 13 11 38 38 H 1.09001 * 113.61350 * 25.51624 * 17 15 14 39 39 H 1.08999 * 113.69149 * 254.62332 * 17 15 14 40 40 H 0.97000 * 120.00415 * 24.99861 * 20 18 17 41 41 H 0.97001 * 119.99542 * 359.97438 * 24 23 21 42 42 H 1.08992 * 113.61464 * 139.97892 * 29 18 17 43 43 H 1.08992 * 113.61608 * 270.88538 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2196 1.0437 0.0000 4 7 3.4677 0.7298 0.0005 5 6 3.5858 -0.6089 0.0004 6 6 2.2691 -1.1119 0.0005 7 7 2.0518 -2.4160 0.0004 8 6 3.0400 -3.2849 0.0015 9 6 4.3653 -2.8787 -0.0019 10 6 4.6633 -1.5164 0.0033 11 6 6.0632 -1.0403 0.0040 12 8 6.2998 0.1519 0.0034 13 7 7.0770 -1.9284 0.0056 14 6 8.4640 -1.4568 0.0069 15 6 9.4113 -2.6583 0.0078 16 1 9.1047 -3.4395 -0.6878 17 6 10.8951 -2.2730 -0.1136 18 6 11.1849 -3.3778 0.9162 19 1 11.3647 -4.3554 0.4690 20 7 12.2027 -3.0078 1.9029 21 6 12.9302 -3.9812 2.5342 22 1 12.7539 -5.0216 2.3043 23 6 13.8948 -3.6306 3.4687 24 7 14.1100 -2.3626 3.7485 25 14 14.8877 -4.9584 4.3292 26 1 15.6368 -5.7490 3.3197 27 1 13.9710 -5.8545 5.0788 28 1 15.8443 -4.3275 5.2737 29 6 9.7435 -3.1821 1.4150 30 1 -0.3633 -0.0004 -1.0277 31 1 -0.3633 -0.8897 0.5142 32 1 -0.3633 0.8902 0.5134 33 1 2.8128 -4.3407 0.0018 34 1 5.1597 -3.6103 -0.0050 35 1 6.8883 -2.8799 0.0065 36 1 8.6416 -0.8530 0.8968 37 1 8.6436 -0.8537 -0.8831 38 1 11.1166 -1.2692 0.2489 39 1 11.3199 -2.4711 -1.0976 40 1 12.3612 -2.0733 2.1092 41 1 13.5947 -1.6731 3.3013 42 1 9.2374 -4.1146 1.6645 43 1 9.6502 -2.4268 2.1953 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086178419.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:30 Heat of formation + Delta-G solvation = 136.992486 kcal Electronic energy + Delta-G solvation = -26602.833929 eV Core-core repulsion = 22686.955006 eV Total energy + Delta-G solvation = -3915.878924 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.78022 -40.32321 -39.17675 -38.45493 -35.47383 -34.93055 -33.73283 -32.76893 -31.26607 -30.09437 -28.45590 -27.61604 -25.73685 -25.19927 -24.15277 -23.70447 -22.73061 -21.28181 -20.66619 -19.44071 -19.03037 -18.23260 -17.83435 -17.42386 -17.27747 -16.15796 -15.75530 -15.54038 -15.19606 -15.00781 -14.71959 -14.29043 -14.07221 -13.76529 -13.62017 -13.50559 -13.45571 -13.24950 -13.18461 -12.64925 -12.03988 -11.96390 -11.91732 -11.64859 -11.46700 -11.01052 -10.77521 -10.60964 -10.39710 -10.26866 -10.01122 -9.93055 -9.81969 -9.70880 -9.43880 -9.17385 -9.10372 -8.89086 -7.05476 -6.12471 -3.12672 -0.38935 0.39802 1.44730 1.80304 2.50409 2.74064 3.17971 3.25352 3.50268 3.53737 3.71577 3.74977 3.87456 4.05025 4.12371 4.42642 4.47192 4.65202 4.72720 4.77878 4.86020 4.87412 5.02673 5.08625 5.12128 5.28769 5.38885 5.46218 5.64850 5.72469 5.74397 5.83734 5.87746 5.90279 6.11587 6.18594 6.23777 6.31500 6.48316 6.69404 6.99310 6.99830 7.24429 7.78466 7.81507 7.95870 8.73228 9.20176 10.06563 10.21477 11.35582 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.026231 B = 0.001905 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.171142 B =14691.033337 C =14967.002901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.310 5.310 3 N -0.005 5.005 4 N -0.214 5.214 5 C 0.003 3.997 6 C 0.209 3.791 7 N -0.457 5.457 8 C 0.159 3.841 9 C -0.142 4.142 10 C -0.008 4.008 11 C 0.547 3.453 12 O -0.500 6.500 13 N -0.715 5.715 14 C 0.132 3.868 15 C -0.126 4.126 16 H 0.090 0.910 17 C -0.144 4.144 18 C 0.171 3.829 19 H 0.077 0.923 20 N -0.724 5.724 21 C -0.337 4.337 22 H 0.065 0.935 23 C -0.045 4.045 24 N -0.942 5.942 25 Si 1.080 2.920 26 H -0.295 1.295 27 H -0.295 1.295 28 H -0.285 1.285 29 C -0.161 4.161 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.183 0.817 34 H 0.159 0.841 35 H 0.399 0.601 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.063 0.937 40 H 0.368 0.632 41 H 0.255 0.745 42 H 0.055 0.945 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.420 -2.712 -11.166 31.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.112 5.112 3 N 0.014 4.986 4 N -0.088 5.088 5 C -0.127 4.127 6 C -0.033 4.033 7 N -0.170 5.170 8 C -0.014 4.014 9 C -0.165 4.165 10 C -0.024 4.024 11 C 0.331 3.669 12 O -0.374 6.374 13 N -0.368 5.368 14 C 0.010 3.990 15 C -0.146 4.146 16 H 0.108 0.892 17 C -0.184 4.184 18 C 0.059 3.941 19 H 0.095 0.905 20 N -0.364 5.364 21 C -0.468 4.468 22 H 0.083 0.917 23 C -0.243 4.243 24 N -0.587 5.587 25 Si 0.911 3.089 26 H -0.222 1.222 27 H -0.223 1.223 28 H -0.210 1.210 29 C -0.202 4.202 30 H 0.110 0.890 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.200 0.800 34 H 0.176 0.824 35 H 0.235 0.765 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.202 0.798 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -28.939 -0.952 -10.054 30.651 hybrid contribution -0.856 -0.794 -1.097 1.602 sum -29.796 -1.746 -11.151 31.862 Atomic orbital electron populations 1.22308 0.71238 1.06220 1.05221 1.47067 1.09209 1.01978 1.52910 1.78298 0.97121 1.11005 1.12202 1.75591 1.06443 1.10674 1.16106 1.20127 0.93232 0.92443 1.06855 1.19799 0.88479 0.89471 1.05596 1.66276 1.37817 0.99050 1.13886 1.22840 0.86831 0.99011 0.92694 1.22422 0.99322 0.94571 1.00229 1.19710 0.92744 0.91901 0.98052 1.17898 0.84011 0.86535 0.78421 1.90892 1.84317 1.15243 1.46962 1.45924 1.06472 1.09598 1.74812 1.21512 0.78138 0.96808 1.02572 1.22642 0.95114 0.96906 0.99900 0.89163 1.23465 0.93180 1.01160 1.00550 1.21458 0.87461 0.95781 0.89382 0.90518 1.42423 1.41900 1.05839 1.46191 1.20090 1.16893 0.89086 1.20699 0.91683 1.25806 0.98795 1.01256 0.98435 1.70886 1.43440 0.99204 1.45160 0.83241 0.75960 0.73707 0.75999 1.22238 1.22261 1.21026 1.23951 1.01256 1.00428 0.94594 0.88999 0.87872 0.87666 0.79991 0.82365 0.76533 0.90873 0.91285 0.90222 0.91836 0.79794 0.93334 0.92603 0.90442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.36 11.41 59.85 0.68 1.05 16 2 N -0.31 -2.99 3.80 -67.23 -0.26 -3.24 16 3 N 0.00 -0.06 13.07 60.35 0.79 0.73 16 4 N -0.21 -3.25 11.92 32.23 0.38 -2.87 16 5 C 0.00 0.04 6.97 -84.72 -0.59 -0.55 16 6 C 0.21 2.24 8.08 -156.21 -1.26 0.98 16 7 N -0.46 -3.91 10.35 -12.38 -0.13 -4.03 16 8 C 0.16 0.90 11.14 -17.52 -0.20 0.71 16 9 C -0.14 -0.90 9.61 -38.99 -0.37 -1.27 16 10 C -0.01 -0.08 5.92 -104.51 -0.62 -0.70 16 11 C 0.55 7.22 7.79 -12.32 -0.10 7.13 16 12 O -0.50 -8.87 16.27 5.33 0.09 -8.78 16 13 N -0.72 -7.53 5.51 -61.25 -0.34 -7.87 16 14 C 0.13 1.64 5.51 -4.04 -0.02 1.62 16 15 C -0.13 -1.56 3.75 -89.80 -0.34 -1.90 16 16 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 17 C -0.14 -2.19 7.39 -25.92 -0.19 -2.39 16 18 C 0.17 3.23 4.48 -67.12 -0.30 2.93 16 19 H 0.08 1.45 8.10 -51.93 -0.42 1.03 16 20 N -0.72 -17.82 5.40 -52.64 -0.28 -18.10 16 21 C -0.34 -9.35 9.97 -15.06 -0.15 -9.50 16 22 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 23 C -0.05 -1.31 5.50 -17.43 -0.10 -1.40 16 24 N -0.94 -29.13 13.70 55.49 0.76 -28.37 16 25 Si 1.08 25.69 29.92 -169.99 -5.09 20.60 16 26 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.30 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 29 C -0.16 -2.53 7.43 -25.92 -0.19 -2.72 16 30 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.18 0.25 8.06 -52.49 -0.42 -0.17 16 34 H 0.16 0.43 6.53 -52.49 -0.34 0.09 16 35 H 0.40 2.85 6.62 -40.82 -0.27 2.58 16 36 H 0.07 1.05 7.85 -51.93 -0.41 0.65 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.08 1.28 8.08 -51.93 -0.42 0.86 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.37 9.42 6.76 -40.82 -0.28 9.15 16 41 H 0.26 7.78 6.77 -40.82 -0.28 7.51 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.08 1.36 7.90 -51.93 -0.41 0.95 16 LS Contribution 367.72 15.07 5.54 5.54 Total: -1.00 -38.50 367.72 -7.69 -46.19 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -5.41 Total: 6.22 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -3.75 Total: -6.02 kcal Atomic # 7 Polarization: -64.68 SS G_CDS: 0.93 Total: -63.75 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.09 Total: -8.78 kcal Atomic # 14 Polarization: 25.69 SS G_CDS: -5.09 Total: 20.60 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -38.50 -7.69 -46.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086178419.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.183 kcal (2) G-P(sol) polarization free energy of solvation -38.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds