Wall clock time and date at job start Tue Mar 31 2020 05:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35685 * 120.48322 * 2 1 4 4 C 1.40168 * 119.27515 * 180.02562 * 3 2 1 5 5 N 1.31261 * 120.35198 * 0.02562 * 4 3 2 6 6 C 1.33986 * 120.88297 * 359.95858 * 5 4 3 7 7 N 1.32500 * 132.34333 * 180.02562 * 6 5 4 8 8 C 1.33466 * 109.75588 * 180.02562 * 7 6 5 9 9 C 1.48128 * 125.32193 * 179.97438 * 8 7 6 10 10 O 1.21526 * 119.99650 * 179.97438 * 9 8 7 11 11 N 1.34771 * 120.00330 * 359.96862 * 9 8 7 12 12 C 1.46497 * 120.00201 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47355 * 180.02562 * 12 11 9 14 14 H 1.09000 * 112.85188 * 45.33130 * 13 12 11 15 15 C 1.53778 * 113.61886 * 176.52987 * 13 12 11 16 16 C 1.53782 * 87.08463 * 139.97850 * 15 13 12 17 17 H 1.08996 * 113.61097 * 89.19931 * 16 15 13 18 18 N 1.46496 * 113.61378 * 220.02153 * 16 15 13 19 19 C 1.36944 * 119.99507 * 205.00018 * 18 16 15 20 20 H 1.07990 * 120.00074 * 359.97438 * 19 18 16 21 21 C 1.38819 * 119.99602 * 179.97438 * 19 18 16 22 22 N 1.31615 * 119.99842 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 120.00006 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47262 * 89.99915 * 23 21 19 25 25 H 1.48503 * 109.46492 * 209.99876 * 23 21 19 26 26 H 1.48503 * 109.47191 * 329.99475 * 23 21 19 27 27 C 1.53791 * 113.61426 * 274.13978 * 13 12 11 28 28 N 1.31992 * 109.35230 * 359.97438 * 8 7 6 29 29 N 1.36163 * 120.49044 * 180.02562 * 2 1 3 30 30 H 1.08990 * 109.46798 * 90.00285 * 1 2 3 31 31 H 1.08995 * 109.46822 * 210.00192 * 1 2 3 32 32 H 1.09003 * 109.47239 * 329.99955 * 1 2 3 33 33 H 1.08002 * 120.36254 * 359.74157 * 3 2 1 34 34 H 1.07992 * 119.82428 * 179.97438 * 4 3 2 35 35 H 0.97005 * 119.99934 * 0.02562 * 11 9 8 36 36 H 1.08997 * 109.47174 * 300.00119 * 12 11 9 37 37 H 1.08998 * 109.47468 * 60.00258 * 12 11 9 38 38 H 1.08993 * 113.61889 * 254.53136 * 15 13 12 39 39 H 1.09003 * 113.61153 * 25.42960 * 15 13 12 40 40 H 0.97002 * 120.00738 * 25.00278 * 18 16 15 41 41 H 0.96994 * 120.00182 * 180.02562 * 22 21 19 42 42 H 1.09004 * 113.61093 * 334.56527 * 27 13 12 43 43 H 1.08995 * 113.61505 * 105.46417 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.1693 0.0000 4 6 3.5967 1.1397 -0.0005 5 7 4.2360 -0.0067 -0.0016 6 6 3.5666 -1.1674 -0.0013 7 7 3.9691 -2.4297 -0.0016 8 6 2.9094 -3.2411 -0.0016 9 6 2.9641 -4.7214 -0.0025 10 8 1.9348 -5.3674 -0.0019 11 7 4.1553 -5.3517 -0.0041 12 6 4.2094 -6.8157 -0.0055 13 6 5.6697 -7.2721 -0.0065 14 1 6.2847 -6.7251 0.7082 15 6 5.8382 -8.7984 0.0772 16 6 6.9803 -8.6493 -0.9417 17 1 7.9548 -8.4802 -0.4837 18 7 7.0040 -9.7066 -1.9555 19 6 8.1770 -10.0232 -2.5873 20 1 9.0844 -9.4932 -2.3385 21 6 8.1996 -11.0255 -3.5475 22 7 9.3268 -11.3294 -4.1551 23 14 6.6297 -11.9418 -3.9783 24 1 5.9344 -11.2388 -5.0861 25 1 6.9647 -13.3249 -4.4026 26 1 5.7424 -11.9901 -2.7884 27 6 6.2876 -7.3575 -1.4123 28 7 1.8050 -2.5182 -0.0007 29 7 2.1979 -1.1733 -0.0005 30 1 -0.3632 -0.0001 -1.0276 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6692 2.1125 -0.0042 34 1 4.1535 2.0651 -0.0010 35 1 4.9769 -4.8360 -0.0042 36 1 3.7100 -7.1986 0.8844 37 1 3.7087 -7.1969 -0.8955 38 1 6.1685 -9.1482 1.0552 39 1 4.9818 -9.3538 -0.3050 40 1 6.1889 -10.1825 -2.1793 41 1 9.3425 -12.0294 -4.8263 42 1 5.5541 -7.5182 -2.2025 43 1 6.9800 -6.5457 -1.6349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086267107.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:38 Heat of formation + Delta-G solvation = 139.840906 kcal Electronic energy + Delta-G solvation = -26412.051963 eV Core-core repulsion = 22496.296556 eV Total energy + Delta-G solvation = -3915.755407 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.47755 -40.19204 -39.16401 -38.42778 -35.86102 -34.92413 -33.37273 -32.39780 -31.50116 -30.74235 -29.18599 -28.16938 -25.42593 -25.15499 -24.74655 -23.54890 -22.46453 -20.99563 -20.72636 -19.44913 -19.07846 -18.60864 -17.51439 -17.38169 -17.32723 -16.23350 -16.12543 -15.56785 -15.04254 -14.82572 -14.61110 -14.27739 -14.22429 -14.02863 -13.76793 -13.49617 -13.22640 -13.12472 -13.09633 -12.66298 -12.23686 -12.08324 -11.94967 -11.61623 -11.55974 -10.90481 -10.84843 -10.70834 -10.60219 -10.45600 -10.32168 -10.14429 -10.10446 -9.81873 -9.53472 -9.34200 -9.20539 -8.86941 -7.24611 -5.76197 -3.11542 -0.26601 0.04171 1.13843 1.34328 2.44777 2.63653 2.78920 3.05583 3.39465 3.42019 3.42660 3.47236 3.58973 3.98925 4.17811 4.43952 4.57764 4.60064 4.60281 4.67109 4.85647 4.88543 5.04236 5.12218 5.26168 5.40824 5.42070 5.43941 5.46608 5.59914 5.65787 5.70921 5.81031 5.83631 6.09961 6.20726 6.24452 6.32742 6.55135 6.70294 6.78895 7.00700 7.06199 7.36700 7.84514 8.00730 8.43683 9.21661 9.94389 10.14176 11.42039 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.022945 B = 0.001958 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.018955 B =14299.227885 C =14691.554976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.205 3.795 3 C -0.227 4.227 4 C 0.214 3.786 5 N -0.453 5.453 6 C 0.447 3.553 7 N -0.498 5.498 8 C 0.243 3.757 9 C 0.607 3.393 10 O -0.509 6.509 11 N -0.694 5.694 12 C 0.131 3.869 13 C -0.128 4.128 14 H 0.094 0.906 15 C -0.144 4.144 16 C 0.172 3.828 17 H 0.085 0.915 18 N -0.737 5.737 19 C -0.247 4.247 20 H 0.091 0.909 21 C 0.004 3.996 22 N -0.933 5.933 23 Si 0.884 3.116 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.276 1.276 27 C -0.162 4.162 28 N -0.268 5.268 29 N -0.328 5.328 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.177 0.823 34 H 0.195 0.805 35 H 0.415 0.585 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.362 0.638 41 H 0.259 0.741 42 H 0.077 0.923 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.211 30.750 12.213 37.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.087 3.913 3 C -0.252 4.252 4 C 0.028 3.972 5 N -0.168 5.168 6 C 0.086 3.914 7 N -0.233 5.233 8 C -0.041 4.041 9 C 0.387 3.613 10 O -0.381 6.381 11 N -0.346 5.346 12 C 0.009 3.991 13 C -0.147 4.147 14 H 0.113 0.887 15 C -0.184 4.184 16 C 0.061 3.939 17 H 0.103 0.897 18 N -0.377 5.377 19 C -0.377 4.377 20 H 0.109 0.891 21 C -0.192 4.192 22 N -0.581 5.581 23 Si 0.714 3.286 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.203 1.203 27 C -0.203 4.203 28 N -0.102 5.102 29 N -0.109 5.109 30 H 0.117 0.883 31 H 0.110 0.890 32 H 0.118 0.882 33 H 0.194 0.806 34 H 0.211 0.789 35 H 0.251 0.749 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.195 0.805 41 H 0.069 0.931 42 H 0.096 0.904 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.097 29.288 12.110 36.496 hybrid contribution -1.459 0.053 -0.478 1.536 sum -19.556 29.341 11.632 37.130 Atomic orbital electron populations 1.21114 0.86061 1.05803 1.05225 1.20988 0.96883 0.81820 0.91622 1.21875 0.95775 0.97968 1.09571 1.23683 0.91776 0.95835 0.85945 1.68107 1.36106 0.94987 1.17599 1.22725 0.78306 0.93680 0.96647 1.70847 1.28148 0.96411 1.27855 1.24258 0.85951 0.96854 0.97021 1.16309 0.84811 0.81875 0.78337 1.90865 1.33570 1.64789 1.48917 1.45795 1.07753 1.08585 1.72491 1.21614 0.97743 0.77053 1.02700 1.22665 0.93857 0.97966 1.00207 0.88730 1.23464 1.00772 0.93367 1.00759 1.21538 0.95721 0.87792 0.88899 0.89735 1.42763 1.08720 1.41163 1.45008 1.19148 0.88038 1.15388 1.15129 0.89105 1.24701 0.96499 0.99045 0.98955 1.69701 1.24727 1.34094 1.29544 0.86552 0.83987 0.79717 0.78303 1.21077 1.21727 1.20256 1.23959 1.00403 1.01393 0.94539 1.78894 1.19330 0.82950 1.29029 1.49046 1.09222 1.06350 1.46306 0.88295 0.88965 0.88158 0.80595 0.78866 0.74899 0.90974 0.90630 0.91501 0.90265 0.80458 0.93060 0.90403 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.37 10.13 36.01 0.36 0.00 16 2 C 0.20 1.18 6.86 -81.58 -0.56 0.62 16 3 C -0.23 -0.56 9.72 -39.77 -0.39 -0.95 16 4 C 0.21 0.83 11.27 -17.07 -0.19 0.64 16 5 N -0.45 -4.26 10.48 -13.79 -0.14 -4.40 16 6 C 0.45 5.39 8.99 -323.05 -2.90 2.49 16 7 N -0.50 -6.92 10.89 -12.23 -0.13 -7.06 16 8 C 0.24 3.47 7.92 -156.78 -1.24 2.23 16 9 C 0.61 8.93 7.84 -12.20 -0.10 8.83 16 10 O -0.51 -8.82 17.07 5.34 0.09 -8.73 16 11 N -0.69 -8.79 5.55 -61.16 -0.34 -9.13 16 12 C 0.13 1.67 5.50 -4.04 -0.02 1.65 16 13 C -0.13 -1.64 3.75 -89.80 -0.34 -1.98 16 14 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 15 C -0.14 -2.13 7.40 -25.92 -0.19 -2.33 16 16 C 0.17 3.20 4.48 -67.03 -0.30 2.90 16 17 H 0.08 1.60 8.10 -51.93 -0.42 1.18 16 18 N -0.74 -17.40 5.21 -52.55 -0.27 -17.67 16 19 C -0.25 -6.99 10.45 -15.05 -0.16 -7.15 16 20 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 21 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 22 N -0.93 -29.51 13.97 55.49 0.78 -28.74 16 23 Si 0.88 22.37 27.74 -169.99 -4.71 17.65 16 24 H -0.28 -7.18 7.11 56.52 0.40 -6.77 16 25 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 26 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16 27 C -0.16 -2.60 7.45 -25.82 -0.19 -2.79 16 28 N -0.27 -3.65 12.67 32.02 0.41 -3.25 16 29 N -0.33 -3.50 3.91 -10.07 -0.04 -3.53 16 30 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.10 -0.03 8.09 -51.93 -0.42 -0.45 16 33 H 0.18 -0.35 8.06 -52.49 -0.42 -0.77 16 34 H 0.19 -0.14 8.06 -52.49 -0.42 -0.56 16 35 H 0.41 4.78 8.14 -40.82 -0.33 4.45 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.08 1.04 7.88 -51.93 -0.41 0.63 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.08 1.19 8.08 -51.93 -0.42 0.77 16 40 H 0.36 8.44 5.78 -40.82 -0.24 8.20 16 41 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 42 H 0.08 1.33 7.92 -51.93 -0.41 0.92 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 370.78 15.07 5.59 5.59 Total: -1.00 -38.26 370.78 -10.72 -48.98 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -5.62 Total: 6.11 kcal Atomic # 6 Polarization: 10.49 SS G_CDS: -6.31 Total: 4.18 kcal Atomic # 7 Polarization: -74.03 SS G_CDS: 0.25 Total: -73.78 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.09 Total: -8.73 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.71 Total: 17.65 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -38.26 -10.72 -48.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086267107.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.818 kcal (2) G-P(sol) polarization free energy of solvation -38.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds