Wall clock time and date at job start Tue Mar 31 2020 05:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.40166 * 120.36354 * 2 1 4 4 N 1.31255 * 120.35816 * 180.02562 * 3 2 1 5 5 C 1.33993 * 120.88022 * 359.97438 * 4 3 2 6 6 N 1.32492 * 132.34458 * 179.97438 * 5 4 3 7 7 C 1.33466 * 109.75825 * 180.02562 * 6 5 4 8 8 C 1.48133 * 125.32754 * 180.02562 * 7 6 5 9 9 O 1.21522 * 119.99516 * 180.02562 * 8 7 6 10 10 N 1.34766 * 119.99803 * 0.02562 * 8 7 6 11 11 C 1.46500 * 119.99811 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.47022 * 180.02562 * 11 10 8 13 13 H 1.08993 * 112.84968 * 316.19374 * 12 11 10 14 14 C 1.53779 * 113.61667 * 87.50053 * 12 11 10 15 15 C 1.53783 * 87.08227 * 139.97732 * 14 12 11 16 16 H 1.08994 * 113.69301 * 220.00804 * 15 14 12 17 17 N 1.46504 * 113.60943 * 89.11573 * 15 14 12 18 18 C 1.36934 * 119.99567 * 107.50634 * 17 15 14 19 19 H 1.08001 * 120.00537 * 359.97438 * 18 17 15 20 20 C 1.38811 * 119.99798 * 179.97438 * 18 17 15 21 21 N 1.31624 * 120.00134 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00229 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47228 * 179.97438 * 22 20 18 24 24 H 1.48501 * 109.46793 * 299.99987 * 22 20 18 25 25 H 1.48500 * 109.47000 * 60.00079 * 22 20 18 26 26 C 1.53780 * 87.08054 * 334.56847 * 15 14 12 27 27 N 1.31999 * 109.34797 * 0.26299 * 7 6 5 28 28 N 1.36875 * 120.22290 * 359.97438 * 5 4 3 29 29 C 1.35678 * 120.36278 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.46860 * 90.00550 * 1 2 3 31 31 H 1.08998 * 109.47184 * 209.99916 * 1 2 3 32 32 H 1.08996 * 109.47026 * 330.00493 * 1 2 3 33 33 H 1.07996 * 119.82154 * 0.02562 * 3 2 1 34 34 H 0.97001 * 120.00479 * 0.02562 * 10 8 7 35 35 H 1.09000 * 109.47457 * 60.00229 * 11 10 8 36 36 H 1.09005 * 109.47164 * 299.99514 * 11 10 8 37 37 H 1.09009 * 113.61131 * 25.43422 * 14 12 11 38 38 H 1.08995 * 113.61898 * 254.53003 * 14 12 11 39 39 H 0.97000 * 119.99825 * 287.49814 * 17 15 14 40 40 H 0.97005 * 119.99717 * 0.02562 * 21 20 18 41 41 H 1.09004 * 113.61472 * 139.97729 * 26 15 14 42 42 H 1.08997 * 113.61665 * 270.79238 * 26 15 14 43 43 H 1.07998 * 120.49136 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2156 1.2094 0.0000 4 7 3.5281 1.2093 -0.0005 5 6 4.2157 0.0592 -0.0005 6 7 5.5142 -0.2042 -0.0014 7 6 5.7066 -1.5250 -0.0015 8 6 7.0260 -2.1984 -0.0019 9 8 7.0887 -3.4120 -0.0024 10 7 8.1567 -1.4651 -0.0016 11 6 9.4616 -2.1311 -0.0025 12 6 10.5716 -1.0781 -0.0013 13 1 10.3797 -0.2600 -0.6955 14 6 10.9764 -0.6112 1.4069 15 6 12.4308 -0.6236 0.9075 16 1 13.1420 -1.0063 1.6394 17 7 12.8566 0.6443 0.3095 18 6 13.7295 1.4586 0.9805 19 1 14.1036 1.1665 1.9506 20 6 14.1334 2.6597 0.4138 21 7 13.6778 3.0156 -0.7687 22 14 15.3235 3.7710 1.3292 23 1 15.5948 4.9830 0.5154 24 1 14.7274 4.1703 2.6294 25 1 16.5950 3.0426 1.5705 26 6 11.9846 -1.6724 -0.1249 27 7 4.5372 -2.1372 -0.0064 28 7 3.5542 -1.1390 0.0005 29 6 2.1929 -1.1707 -0.0005 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5137 33 1 1.6786 2.1464 0.0004 34 1 8.1067 -0.4964 -0.0008 35 1 9.5515 -2.7532 -0.8930 36 1 9.5519 -2.7546 0.8870 37 1 10.7758 -1.3474 2.1854 38 1 10.6098 0.3837 1.6593 39 1 12.5204 0.9068 -0.5616 40 1 13.0595 2.4387 -1.2440 41 1 12.4319 -1.5340 -1.1092 42 1 12.0611 -2.6986 0.2342 43 1 1.6669 -2.1139 -0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086396673.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:43 Heat of formation + Delta-G solvation = 137.750731 kcal Electronic energy + Delta-G solvation = -26413.000998 eV Core-core repulsion = 22497.154954 eV Total energy + Delta-G solvation = -3915.846044 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.42803 -40.18231 -39.23277 -38.46039 -35.28745 -34.87892 -33.72211 -33.41142 -31.29976 -30.08212 -28.47972 -27.19962 -25.78056 -25.11889 -24.17229 -23.42564 -23.27837 -21.77879 -20.68495 -19.26402 -18.55778 -18.54506 -17.67572 -17.23553 -17.16099 -16.36260 -15.96438 -15.50588 -14.96495 -14.82266 -14.65432 -14.35302 -13.90540 -13.83428 -13.71177 -13.53692 -13.27642 -13.21734 -13.06511 -12.98683 -12.35664 -12.18563 -12.00742 -11.49208 -10.92964 -10.81957 -10.76512 -10.65066 -10.54966 -10.31076 -10.14959 -9.96302 -9.94303 -9.68921 -9.30433 -9.19502 -9.10394 -8.86598 -7.04570 -6.10386 -3.10695 -0.22945 0.04413 1.19814 1.37485 2.48842 2.65069 2.85744 3.09122 3.53107 3.53181 3.56772 3.63901 3.74201 3.95996 4.07517 4.30025 4.56428 4.66845 4.81637 4.97079 4.97475 4.98027 5.10725 5.15525 5.25430 5.43216 5.48543 5.49461 5.53747 5.56439 5.59291 5.78486 5.89005 5.97218 6.15733 6.21437 6.30454 6.52281 6.70155 6.79594 6.80814 6.97786 7.10453 7.41488 7.83259 7.89022 8.75203 9.22301 10.08467 10.22884 11.37611 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.015909 B = 0.002115 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.534829 B =13232.762236 C =14707.989684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.183 4.183 3 C 0.213 3.787 4 N -0.442 5.442 5 C 0.439 3.561 6 N -0.494 5.494 7 C 0.242 3.758 8 C 0.608 3.392 9 O -0.512 6.512 10 N -0.693 5.693 11 C 0.131 3.869 12 C -0.121 4.121 13 H 0.094 0.906 14 C -0.169 4.169 15 C 0.172 3.828 16 H 0.064 0.936 17 N -0.717 5.717 18 C -0.334 4.334 19 H 0.066 0.934 20 C -0.045 4.045 21 N -0.942 5.942 22 Si 1.081 2.919 23 H -0.285 1.285 24 H -0.295 1.295 25 H -0.295 1.295 26 C -0.147 4.147 27 N -0.269 5.269 28 N -0.324 5.324 29 C 0.165 3.835 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.194 0.806 34 H 0.416 0.584 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.368 0.632 40 H 0.255 0.745 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.275 -8.104 1.203 31.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.190 4.190 3 C 0.026 3.974 4 N -0.155 5.155 5 C 0.079 3.921 6 N -0.228 5.228 7 C -0.042 4.042 8 C 0.387 3.613 9 O -0.384 6.384 10 N -0.345 5.345 11 C 0.008 3.992 12 C -0.139 4.139 13 H 0.112 0.888 14 C -0.210 4.210 15 C 0.060 3.940 16 H 0.082 0.918 17 N -0.357 5.357 18 C -0.465 4.465 19 H 0.084 0.916 20 C -0.242 4.242 21 N -0.587 5.587 22 Si 0.912 3.088 23 H -0.210 1.210 24 H -0.222 1.222 25 H -0.222 1.222 26 C -0.187 4.187 27 N -0.103 5.103 28 N -0.105 5.105 29 C 0.028 3.972 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.211 0.789 34 H 0.253 0.747 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.202 0.798 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.098 0.902 43 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -28.130 -7.493 1.334 29.141 hybrid contribution -1.879 -1.499 -0.171 2.410 sum -30.009 -8.992 1.162 31.348 Atomic orbital electron populations 1.20659 0.86829 1.04448 1.03735 1.20702 0.99500 0.91994 1.06844 1.23683 0.88029 0.99058 0.86679 1.68126 1.08762 1.22232 1.16378 1.22680 0.89293 0.82880 0.97294 1.70863 1.11000 1.13632 1.27336 1.24267 0.95041 0.87751 0.97116 1.16308 0.80839 0.85826 0.78327 1.90851 1.86044 1.12328 1.49200 1.45838 1.04972 1.11505 1.72214 1.21664 0.79627 0.95449 1.02428 1.22736 0.93348 0.97764 1.00097 0.88806 1.23902 1.01679 1.00972 0.94408 1.20982 0.92546 0.86763 0.93689 0.91772 1.42172 1.53901 1.18746 1.20845 1.20080 1.21743 1.02195 1.02433 0.91582 1.25808 1.03005 0.97112 0.98320 1.70892 1.34310 1.39845 1.13681 0.83229 0.75118 0.76057 0.74434 1.21044 1.22228 1.22240 1.23462 0.94415 0.99389 1.01421 1.78942 0.95118 1.06986 1.29211 1.49013 1.07098 1.08786 1.45556 1.22055 0.79223 1.01716 0.94187 0.89886 0.90439 0.89758 0.78925 0.74748 0.91043 0.90798 0.91164 0.91376 0.79833 0.93394 0.91379 0.90183 0.79781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.04 10.03 36.01 0.36 0.40 16 2 C -0.18 -0.63 5.87 -104.81 -0.61 -1.24 16 3 C 0.21 1.06 10.96 -17.07 -0.19 0.87 16 4 N -0.44 -4.62 10.48 -13.79 -0.14 -4.77 16 5 C 0.44 5.73 8.99 -323.04 -2.90 2.83 16 6 N -0.49 -7.52 10.89 -12.23 -0.13 -7.65 16 7 C 0.24 3.70 7.92 -156.78 -1.24 2.46 16 8 C 0.61 9.52 7.84 -12.20 -0.10 9.43 16 9 O -0.51 -9.16 17.07 5.35 0.09 -9.07 16 10 N -0.69 -9.82 5.55 -61.16 -0.34 -10.16 16 11 C 0.13 1.80 5.51 -4.04 -0.02 1.78 16 12 C -0.12 -1.85 3.63 -89.81 -0.33 -2.17 16 13 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 14 C -0.17 -2.90 7.43 -25.92 -0.19 -3.09 16 15 C 0.17 3.44 4.56 -67.12 -0.31 3.13 16 16 H 0.06 1.30 8.10 -51.93 -0.42 0.88 16 17 N -0.72 -17.91 5.31 -52.64 -0.28 -18.19 16 18 C -0.33 -9.42 9.97 -15.06 -0.15 -9.57 16 19 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 20 C -0.04 -1.31 5.50 -17.43 -0.10 -1.41 16 21 N -0.94 -29.26 13.70 55.49 0.76 -28.50 16 22 Si 1.08 26.09 29.92 -169.99 -5.09 21.00 16 23 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 C -0.15 -2.37 7.39 -25.92 -0.19 -2.56 16 27 N -0.27 -3.88 12.78 32.03 0.41 -3.47 16 28 N -0.32 -3.67 3.91 -13.80 -0.05 -3.72 16 29 C 0.16 0.98 10.97 -16.54 -0.18 0.80 16 30 H 0.08 -0.08 8.14 -51.93 -0.42 -0.50 16 31 H 0.08 -0.08 8.09 -51.93 -0.42 -0.50 16 32 H 0.08 -0.13 8.10 -51.93 -0.42 -0.55 16 33 H 0.19 0.11 8.06 -52.49 -0.42 -0.31 16 34 H 0.42 5.74 8.14 -40.82 -0.33 5.41 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.01 7.84 -51.93 -0.41 0.60 16 37 H 0.07 1.08 7.90 -51.92 -0.41 0.67 16 38 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.37 9.45 6.73 -40.82 -0.27 9.18 16 40 H 0.25 7.78 6.77 -40.82 -0.28 7.51 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 43 H 0.19 0.49 8.06 -52.49 -0.42 0.07 16 LS Contribution 371.92 15.07 5.60 5.60 Total: -1.00 -37.97 371.92 -10.87 -48.84 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -5.55 Total: 8.43 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: -6.15 Total: 1.65 kcal Atomic # 7 Polarization: -76.68 SS G_CDS: 0.22 Total: -76.46 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.09 Total: -9.07 kcal Atomic # 14 Polarization: 26.09 SS G_CDS: -5.09 Total: 21.00 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -37.97 -10.87 -48.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086396673.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.590 kcal (2) G-P(sol) polarization free energy of solvation -37.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds