Wall clock time and date at job start Tue Mar 31 2020 05:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28777 * 125.87279 * 2 1 4 4 N 1.28689 * 111.75854 * 180.02562 * 3 2 1 5 5 C 1.34389 * 109.15574 * 359.97438 * 4 3 2 6 6 C 1.37213 * 125.86565 * 179.97438 * 2 1 3 7 7 N 1.32207 * 134.67854 * 0.02562 * 6 2 1 8 8 C 1.31584 * 121.87125 * 180.02562 * 7 6 2 9 9 C 1.38620 * 121.63331 * 359.74093 * 8 7 6 10 10 C 1.39446 * 119.37385 * 0.51389 * 9 8 7 11 11 C 1.47876 * 121.11501 * 179.76356 * 10 9 8 12 12 O 1.21543 * 120.00451 * 179.44733 * 11 10 9 13 13 N 1.34777 * 119.99826 * 359.71628 * 11 10 9 14 14 C 1.46506 * 120.00268 * 180.02562 * 13 11 10 15 15 C 1.52989 * 109.47205 * 180.02562 * 14 13 11 16 16 H 1.09001 * 112.85699 * 43.80370 * 15 14 13 17 17 C 1.53785 * 113.61361 * 174.99686 * 15 14 13 18 18 C 1.53780 * 87.08141 * 139.97808 * 17 15 14 19 19 H 1.09000 * 113.61907 * 219.93478 * 18 17 15 20 20 N 1.46502 * 113.61091 * 89.11829 * 18 17 15 21 21 C 1.36940 * 119.99934 * 155.00396 * 20 18 17 22 22 H 1.07999 * 120.00113 * 359.97438 * 21 20 18 23 23 C 1.38815 * 120.00061 * 179.97438 * 21 20 18 24 24 N 1.31613 * 120.00071 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99971 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47077 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47249 * 120.00004 * 25 23 21 28 28 H 1.48503 * 109.46944 * 239.99800 * 25 23 21 29 29 C 1.53778 * 113.61368 * 272.49273 * 15 14 13 30 30 H 1.08999 * 109.47183 * 89.97797 * 1 2 3 31 31 H 1.09001 * 109.47007 * 209.97603 * 1 2 3 32 32 H 1.09004 * 109.46787 * 329.97557 * 1 2 3 33 33 H 1.08001 * 119.18315 * 180.02562 * 8 7 6 34 34 H 1.08001 * 120.31030 * 180.27753 * 9 8 7 35 35 H 0.96999 * 120.00043 * 0.02562 * 13 11 10 36 36 H 1.09001 * 109.46379 * 300.00178 * 14 13 11 37 37 H 1.08992 * 109.47170 * 59.99739 * 14 13 11 38 38 H 1.08999 * 113.61727 * 254.52748 * 17 15 14 39 39 H 1.09002 * 113.61037 * 25.35176 * 17 15 14 40 40 H 0.96996 * 120.00434 * 334.99441 * 20 18 17 41 41 H 0.96999 * 120.00296 * 179.97438 * 24 23 21 42 42 H 1.08994 * 113.61743 * 334.56944 * 29 15 14 43 43 H 1.09001 * 113.61211 * 105.47227 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2196 1.0435 0.0000 4 7 3.4677 0.7297 -0.0005 5 6 3.5858 -0.6090 -0.0004 6 6 2.2689 -1.1120 0.0005 7 7 2.0517 -2.4161 0.0007 8 6 3.0398 -3.2850 0.0017 9 6 4.3652 -2.8788 -0.0027 10 6 4.6631 -1.5166 0.0026 11 6 6.0631 -1.0405 0.0034 12 8 6.2997 0.1517 -0.0021 13 7 7.0769 -1.9287 0.0048 14 6 8.4640 -1.4571 0.0062 15 6 9.4111 -2.6586 0.0070 16 1 9.1045 -3.4398 -0.6887 17 6 10.8949 -2.2734 -0.1144 18 6 11.1846 -3.3767 0.9170 19 1 11.9425 -3.1010 1.6501 20 7 11.4246 -4.6918 0.3177 21 6 12.1705 -5.6240 0.9884 22 1 12.5822 -5.3896 1.9589 23 6 12.3975 -6.8703 0.4208 24 7 11.8954 -7.1562 -0.7617 25 14 13.4156 -8.1417 1.3354 26 1 13.8621 -7.5770 2.6343 27 1 12.5923 -9.3533 1.5786 28 1 14.6023 -8.5052 0.5200 29 6 9.7429 -3.1805 1.4149 30 1 -0.3633 0.0004 -1.0276 31 1 -0.3633 -0.8902 0.5135 32 1 -0.3633 0.8898 0.5142 33 1 2.8127 -4.3408 0.0013 34 1 5.1595 -3.6105 -0.0063 35 1 6.8881 -2.8801 0.0049 36 1 8.6434 -0.8540 -0.8838 37 1 8.6416 -0.8534 0.8961 38 1 11.3189 -2.4734 -1.0985 39 1 11.1160 -1.2686 0.2455 40 1 11.0551 -4.9023 -0.5541 41 1 12.0543 -8.0270 -1.1585 42 1 9.6493 -2.4242 2.1942 43 1 9.2368 -4.1128 1.6655 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086458170.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:36 Heat of formation + Delta-G solvation = 137.138256 kcal Electronic energy + Delta-G solvation = -26738.019726 eV Core-core repulsion = 22822.147123 eV Total energy + Delta-G solvation = -3915.872603 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.71971 -40.24382 -39.10684 -38.40473 -35.41512 -34.79648 -33.38212 -32.65691 -31.19331 -30.18702 -28.40813 -27.65889 -25.70125 -25.08776 -24.10147 -23.77439 -22.73131 -21.64233 -20.57671 -19.26428 -18.52222 -18.11819 -17.71790 -17.36677 -17.25656 -16.01568 -15.67595 -15.45289 -15.09756 -14.91047 -14.37144 -14.25473 -14.07164 -13.88575 -13.55048 -13.42660 -13.26691 -13.12677 -12.91638 -12.59784 -12.32172 -11.95348 -11.86875 -11.52476 -11.36282 -11.07781 -10.89158 -10.56522 -10.50723 -10.16818 -10.03131 -9.78605 -9.72986 -9.63362 -9.50815 -9.36609 -9.05326 -8.92351 -7.03767 -5.84625 -3.13538 -0.31799 0.47633 1.50394 1.85957 2.57854 2.83621 3.24875 3.32833 3.38830 3.45265 3.47086 3.82162 3.94379 4.14466 4.19097 4.51380 4.51989 4.52876 4.80324 4.84545 4.99657 5.01195 5.11832 5.16809 5.19993 5.37078 5.41949 5.57920 5.67077 5.72760 5.83410 5.91706 5.94740 6.06213 6.18886 6.30580 6.34490 6.55349 6.70504 6.85919 7.00477 7.07055 7.34224 7.66459 7.86949 8.03505 8.34655 9.45568 10.02894 10.37099 11.37815 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.022584 B = 0.002093 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.507345 B =13377.401626 C =14328.164341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.311 5.311 3 N -0.006 5.006 4 N -0.215 5.215 5 C 0.003 3.997 6 C 0.208 3.792 7 N -0.457 5.457 8 C 0.160 3.840 9 C -0.140 4.140 10 C -0.009 4.009 11 C 0.548 3.452 12 O -0.505 6.505 13 N -0.714 5.714 14 C 0.131 3.869 15 C -0.120 4.120 16 H 0.094 0.906 17 C -0.148 4.148 18 C 0.167 3.833 19 H 0.063 0.937 20 N -0.706 5.706 21 C -0.241 4.241 22 H 0.073 0.927 23 C -0.013 4.013 24 N -0.932 5.932 25 Si 0.908 3.092 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.291 1.291 29 C -0.169 4.169 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.184 0.816 34 H 0.161 0.839 35 H 0.402 0.598 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.385 0.615 41 H 0.255 0.745 42 H 0.068 0.932 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.329 10.091 0.888 25.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.112 5.112 3 N 0.012 4.988 4 N -0.089 5.089 5 C -0.127 4.127 6 C -0.034 4.034 7 N -0.171 5.171 8 C -0.012 4.012 9 C -0.164 4.164 10 C -0.025 4.025 11 C 0.332 3.668 12 O -0.379 6.379 13 N -0.367 5.367 14 C 0.008 3.992 15 C -0.139 4.139 16 H 0.112 0.888 17 C -0.187 4.187 18 C 0.055 3.945 19 H 0.081 0.919 20 N -0.344 5.344 21 C -0.373 4.373 22 H 0.091 0.909 23 C -0.209 4.209 24 N -0.580 5.580 25 Si 0.739 3.261 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.218 1.218 29 C -0.210 4.210 30 H 0.110 0.890 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.201 0.799 34 H 0.178 0.822 35 H 0.237 0.763 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.087 0.913 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -23.945 12.228 0.996 26.905 hybrid contribution 0.750 -2.181 0.096 2.309 sum -23.195 10.046 1.091 25.301 Atomic orbital electron populations 1.22299 0.71299 1.06156 1.05205 1.47040 1.09167 1.01996 1.53019 1.78274 0.97136 1.11051 1.12354 1.75566 1.06435 1.10715 1.16168 1.20116 0.93238 0.92402 1.06915 1.19803 0.88470 0.89485 1.05611 1.66279 1.37845 0.99031 1.13957 1.22866 0.86831 0.99048 0.92483 1.22476 0.99420 0.94651 0.99823 1.19711 0.92774 0.91876 0.98173 1.17893 0.84023 0.86505 0.78362 1.90872 1.84376 1.15261 1.47393 1.45962 1.06472 1.09782 1.74440 1.21566 0.78378 0.97035 1.02182 1.22726 0.94755 0.96517 0.99890 0.88778 1.23447 0.94034 0.99736 1.01513 1.21058 0.93463 0.86253 0.93769 0.91931 1.42175 1.61453 1.09510 1.21283 1.19340 1.24295 0.92978 1.00638 0.90928 1.24762 1.01198 0.97964 0.96991 1.69663 1.49540 1.22378 1.16464 0.86104 0.79604 0.81592 0.78802 1.20492 1.21846 1.21842 1.23896 1.02232 1.00384 0.94448 0.89026 0.87890 0.87727 0.79912 0.82188 0.76281 0.91413 0.91169 0.91272 0.90385 0.78120 0.93491 0.91328 0.91453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.40 11.41 59.85 0.68 1.08 16 2 N -0.31 -3.11 3.79 -67.22 -0.26 -3.36 16 3 N -0.01 -0.08 13.07 60.35 0.79 0.71 16 4 N -0.21 -3.30 11.92 32.23 0.38 -2.92 16 5 C 0.00 0.04 6.97 -84.72 -0.59 -0.55 16 6 C 0.21 2.35 8.08 -156.21 -1.26 1.09 16 7 N -0.46 -4.27 10.35 -12.38 -0.13 -4.40 16 8 C 0.16 1.09 11.14 -17.52 -0.20 0.89 16 9 C -0.14 -1.06 9.61 -38.99 -0.37 -1.43 16 10 C -0.01 -0.10 5.92 -104.51 -0.62 -0.72 16 11 C 0.55 7.50 7.79 -12.32 -0.10 7.41 16 12 O -0.50 -8.95 16.27 5.33 0.09 -8.86 16 13 N -0.71 -8.20 5.51 -61.25 -0.34 -8.53 16 14 C 0.13 1.66 5.51 -4.04 -0.02 1.64 16 15 C -0.12 -1.66 3.63 -89.81 -0.33 -1.99 16 16 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 17 C -0.15 -2.25 7.39 -25.92 -0.19 -2.44 16 18 C 0.17 3.11 4.56 -67.12 -0.31 2.80 16 19 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 20 N -0.71 -16.72 5.31 -52.63 -0.28 -17.00 16 21 C -0.24 -6.45 9.97 -15.06 -0.15 -6.60 16 22 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -27.09 13.06 55.49 0.72 -26.37 16 25 Si 0.91 21.71 29.55 -169.99 -5.02 16.68 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 C -0.17 -2.62 7.43 -25.92 -0.19 -2.81 16 30 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.18 0.50 8.06 -52.49 -0.42 0.08 16 34 H 0.16 0.72 6.53 -52.49 -0.34 0.38 16 35 H 0.40 3.60 6.62 -40.82 -0.27 3.33 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.93 7.84 -51.93 -0.41 0.52 16 38 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 40 H 0.38 9.62 7.90 -40.82 -0.32 9.30 16 41 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 42 H 0.07 0.97 7.90 -51.93 -0.41 0.56 16 43 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 369.26 15.07 5.56 5.56 Total: -1.00 -35.87 369.26 -7.74 -43.61 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -5.52 Total: 6.97 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -3.74 Total: -2.10 kcal Atomic # 7 Polarization: -62.77 SS G_CDS: 0.90 Total: -61.87 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.09 Total: -8.86 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.87 -7.74 -43.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086458170.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.744 kcal (2) G-P(sol) polarization free energy of solvation -35.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds