Wall clock time and date at job start Tue Mar 31 2020 05:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28777 * 125.87279 * 2 1 4 4 N 1.28689 * 111.75854 * 180.02562 * 3 2 1 5 5 C 1.34389 * 109.15574 * 359.97438 * 4 3 2 6 6 C 1.37213 * 125.86565 * 179.97438 * 2 1 3 7 7 N 1.32207 * 134.67854 * 0.02562 * 6 2 1 8 8 C 1.31584 * 121.87125 * 180.02562 * 7 6 2 9 9 C 1.38620 * 121.63331 * 359.74093 * 8 7 6 10 10 C 1.39446 * 119.37385 * 0.51389 * 9 8 7 11 11 C 1.47876 * 121.11501 * 179.76356 * 10 9 8 12 12 O 1.21543 * 120.00451 * 179.44733 * 11 10 9 13 13 N 1.34777 * 119.99826 * 359.71628 * 11 10 9 14 14 C 1.46506 * 120.00268 * 180.02562 * 13 11 10 15 15 C 1.52989 * 109.47205 * 180.02562 * 14 13 11 16 16 H 1.09001 * 112.85699 * 43.80370 * 15 14 13 17 17 C 1.53785 * 113.61361 * 174.99686 * 15 14 13 18 18 C 1.53780 * 87.08141 * 139.97808 * 17 15 14 19 19 H 1.09000 * 113.61907 * 219.93478 * 18 17 15 20 20 N 1.46502 * 113.61091 * 89.11829 * 18 17 15 21 21 C 1.36940 * 119.99934 * 155.00396 * 20 18 17 22 22 H 1.07999 * 120.00113 * 359.97438 * 21 20 18 23 23 C 1.38815 * 120.00061 * 179.97438 * 21 20 18 24 24 N 1.31613 * 120.00071 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99971 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47077 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47249 * 120.00004 * 25 23 21 28 28 H 1.48503 * 109.46944 * 239.99800 * 25 23 21 29 29 C 1.53778 * 113.61368 * 272.49273 * 15 14 13 30 30 H 1.08999 * 109.47183 * 89.97797 * 1 2 3 31 31 H 1.09001 * 109.47007 * 209.97603 * 1 2 3 32 32 H 1.09004 * 109.46787 * 329.97557 * 1 2 3 33 33 H 1.08001 * 119.18315 * 180.02562 * 8 7 6 34 34 H 1.08001 * 120.31030 * 180.27753 * 9 8 7 35 35 H 0.96999 * 120.00043 * 0.02562 * 13 11 10 36 36 H 1.09001 * 109.46379 * 300.00178 * 14 13 11 37 37 H 1.08992 * 109.47170 * 59.99739 * 14 13 11 38 38 H 1.08999 * 113.61727 * 254.52748 * 17 15 14 39 39 H 1.09002 * 113.61037 * 25.35176 * 17 15 14 40 40 H 0.96996 * 120.00434 * 334.99441 * 20 18 17 41 41 H 0.96999 * 120.00296 * 179.97438 * 24 23 21 42 42 H 1.08994 * 113.61743 * 334.56944 * 29 15 14 43 43 H 1.09001 * 113.61211 * 105.47227 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2196 1.0435 0.0000 4 7 3.4677 0.7297 -0.0005 5 6 3.5858 -0.6090 -0.0004 6 6 2.2689 -1.1120 0.0005 7 7 2.0517 -2.4161 0.0007 8 6 3.0398 -3.2850 0.0017 9 6 4.3652 -2.8788 -0.0027 10 6 4.6631 -1.5166 0.0026 11 6 6.0631 -1.0405 0.0034 12 8 6.2997 0.1517 -0.0021 13 7 7.0769 -1.9287 0.0048 14 6 8.4640 -1.4571 0.0062 15 6 9.4111 -2.6586 0.0070 16 1 9.1045 -3.4398 -0.6887 17 6 10.8949 -2.2734 -0.1144 18 6 11.1846 -3.3767 0.9170 19 1 11.9425 -3.1010 1.6501 20 7 11.4246 -4.6918 0.3177 21 6 12.1705 -5.6240 0.9884 22 1 12.5822 -5.3896 1.9589 23 6 12.3975 -6.8703 0.4208 24 7 11.8954 -7.1562 -0.7617 25 14 13.4156 -8.1417 1.3354 26 1 13.8621 -7.5770 2.6343 27 1 12.5923 -9.3533 1.5786 28 1 14.6023 -8.5052 0.5200 29 6 9.7429 -3.1805 1.4149 30 1 -0.3633 0.0004 -1.0276 31 1 -0.3633 -0.8902 0.5135 32 1 -0.3633 0.8898 0.5142 33 1 2.8127 -4.3408 0.0013 34 1 5.1595 -3.6105 -0.0063 35 1 6.8881 -2.8801 0.0049 36 1 8.6434 -0.8540 -0.8838 37 1 8.6416 -0.8534 0.8961 38 1 11.3189 -2.4734 -1.0985 39 1 11.1160 -1.2686 0.2455 40 1 11.0551 -4.9023 -0.5541 41 1 12.0543 -8.0270 -1.1585 42 1 9.6493 -2.4242 2.1942 43 1 9.2368 -4.1128 1.6655 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086458170.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:35 Heat of formation + Delta-G solvation = 110.259120 kcal Electronic energy + Delta-G solvation = -26739.185293 eV Core-core repulsion = 22822.147123 eV Total energy + Delta-G solvation = -3917.038170 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.50491 -41.20728 -40.11997 -39.52898 -36.19367 -36.02001 -35.04318 -33.52517 -32.01869 -31.88533 -29.04775 -28.79902 -26.59638 -26.38852 -25.62015 -24.77913 -23.77905 -22.82194 -21.48034 -20.12064 -19.70790 -19.34393 -18.84979 -18.52156 -18.12261 -17.04643 -16.65001 -16.49020 -16.46000 -15.80456 -15.71931 -15.54309 -14.99237 -14.89687 -14.62908 -14.48548 -14.15612 -14.08225 -13.76173 -13.67678 -13.43356 -13.25430 -12.92689 -12.89126 -12.64143 -12.61796 -12.16349 -12.09629 -12.02598 -11.66089 -11.45318 -11.31922 -10.92354 -10.81007 -10.60679 -10.35974 -10.25478 -9.99449 -8.95683 -7.92329 -5.19803 -1.08964 -0.20914 0.89032 0.97241 1.50385 1.51555 1.60857 1.70976 1.89845 2.52535 2.57398 2.58495 3.13638 3.19076 3.38007 3.41152 3.61864 3.75240 3.81706 3.88716 4.01032 4.19957 4.23134 4.24534 4.35902 4.37358 4.44282 4.54843 4.57792 4.72194 4.76339 4.81441 4.97999 5.04099 5.08102 5.14411 5.25893 5.35481 5.39207 5.49731 5.57697 5.70337 6.31857 6.39336 6.42273 7.03424 7.07680 7.37278 8.14504 8.37099 9.30914 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.022584 B = 0.002093 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.507345 B =13377.401626 C =14328.164341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.298 5.298 3 N -0.025 5.025 4 N -0.269 5.269 5 C -0.026 4.026 6 C 0.196 3.804 7 N -0.458 5.458 8 C 0.172 3.828 9 C -0.109 4.109 10 C -0.042 4.042 11 C 0.549 3.451 12 O -0.556 6.556 13 N -0.701 5.701 14 C 0.139 3.861 15 C -0.100 4.100 16 H 0.090 0.910 17 C -0.137 4.137 18 C 0.143 3.857 19 H 0.057 0.943 20 N -0.718 5.718 21 C -0.239 4.239 22 H 0.075 0.925 23 C -0.074 4.074 24 N -0.967 5.967 25 Si 0.969 3.031 26 H -0.268 1.268 27 H -0.293 1.293 28 H -0.297 1.297 29 C -0.152 4.152 30 H 0.110 0.890 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.234 0.766 34 H 0.196 0.804 35 H 0.416 0.584 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.102 0.898 40 H 0.376 0.624 41 H 0.251 0.749 42 H 0.089 0.911 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.760 8.649 1.655 26.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.100 5.100 3 N -0.006 5.006 4 N -0.142 5.142 5 C -0.157 4.157 6 C -0.046 4.046 7 N -0.172 5.172 8 C -0.001 4.001 9 C -0.133 4.133 10 C -0.058 4.058 11 C 0.335 3.665 12 O -0.434 6.434 13 N -0.354 5.354 14 C 0.016 3.984 15 C -0.119 4.119 16 H 0.108 0.892 17 C -0.176 4.176 18 C 0.033 3.967 19 H 0.075 0.925 20 N -0.357 5.357 21 C -0.371 4.371 22 H 0.093 0.907 23 C -0.266 4.266 24 N -0.618 5.618 25 Si 0.799 3.201 26 H -0.192 1.192 27 H -0.220 1.220 28 H -0.224 1.224 29 C -0.193 4.193 30 H 0.128 0.872 31 H 0.137 0.863 32 H 0.140 0.860 33 H 0.250 0.750 34 H 0.213 0.787 35 H 0.254 0.746 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.120 0.880 40 H 0.208 0.792 41 H 0.060 0.940 42 H 0.107 0.893 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -25.406 10.832 1.798 27.677 hybrid contribution 1.129 -1.779 -0.115 2.110 sum -24.277 9.053 1.683 25.965 Atomic orbital electron populations 1.22788 0.68407 1.07890 1.06954 1.47478 1.10609 1.01215 1.50725 1.78145 0.96997 1.12097 1.13353 1.75461 1.07702 1.12459 1.18565 1.20501 0.94989 0.92141 1.08036 1.19980 0.87867 0.90359 1.06391 1.66454 1.38623 0.98082 1.14002 1.23800 0.85919 1.00697 0.89731 1.22953 1.01025 0.93243 0.96058 1.19698 0.91181 0.93431 1.01498 1.18213 0.85099 0.85948 0.77225 1.90840 1.85199 1.17383 1.49940 1.45801 1.05664 1.10330 1.73564 1.21383 0.78713 0.96219 1.02060 1.22503 0.94233 0.96547 0.98570 0.89206 1.23361 0.94705 0.99639 0.99918 1.21379 0.95121 0.85173 0.95039 0.92476 1.42282 1.61428 1.10932 1.21008 1.19687 1.23374 0.93498 1.00569 0.90690 1.25494 1.03118 1.00002 0.98013 1.69798 1.51435 1.22549 1.17971 0.85128 0.77797 0.79157 0.78001 1.19245 1.21995 1.22420 1.23705 0.99189 1.00489 0.95878 0.87188 0.86256 0.85954 0.74970 0.78733 0.74627 0.91716 0.91286 0.92340 0.87956 0.79207 0.94050 0.89272 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.56 11.41 127.77 1.46 2.02 16 2 N -0.30 -5.85 3.79 -366.60 -1.39 -7.24 16 3 N -0.02 -0.65 13.07 37.02 0.48 -0.17 16 4 N -0.27 -8.75 11.92 -51.93 -0.62 -9.37 16 5 C -0.03 -0.71 6.97 40.06 0.28 -0.43 16 6 C 0.20 4.26 8.08 134.17 1.08 5.34 16 7 N -0.46 -7.31 10.35 -193.09 -2.00 -9.31 16 8 C 0.17 1.62 11.14 84.82 0.94 2.57 16 9 C -0.11 -1.30 9.61 22.65 0.22 -1.08 16 10 C -0.04 -0.95 5.92 -19.79 -0.12 -1.07 16 11 C 0.55 14.92 7.79 86.80 0.68 15.60 16 12 O -0.56 -20.40 16.27 -3.85 -0.06 -20.46 16 13 N -0.70 -14.96 5.51 -465.96 -2.57 -17.53 16 14 C 0.14 3.32 5.51 86.37 0.48 3.79 16 15 C -0.10 -2.58 3.63 -10.27 -0.04 -2.62 16 16 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 17 C -0.14 -3.97 7.39 31.12 0.23 -3.74 16 18 C 0.14 5.17 4.56 45.52 0.21 5.38 16 19 H 0.06 2.11 8.10 -2.39 -0.02 2.09 16 20 N -0.72 -33.86 5.31 -320.44 -1.70 -35.56 16 21 C -0.24 -12.71 9.97 84.03 0.84 -11.87 16 22 H 0.08 3.86 7.83 -2.91 -0.02 3.83 16 23 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 24 N -0.97 -56.63 13.06 21.65 0.28 -56.35 16 25 Si 0.97 44.58 29.55 68.60 2.03 46.60 16 26 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 27 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 28 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 29 C -0.15 -4.43 7.43 31.12 0.23 -4.20 16 30 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.12 0.44 8.14 -2.38 -0.02 0.43 16 33 H 0.23 -0.17 8.06 -2.91 -0.02 -0.19 16 34 H 0.20 0.83 6.53 -2.91 -0.02 0.81 16 35 H 0.42 6.30 6.62 -92.71 -0.61 5.69 16 36 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.07 1.71 7.84 -2.39 -0.02 1.69 16 38 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.10 2.49 8.10 -2.39 -0.02 2.47 16 40 H 0.38 18.87 7.90 -92.71 -0.73 18.14 16 41 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 42 H 0.09 2.27 7.90 -2.39 -0.02 2.25 16 43 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -81.93 369.26 1.13 -80.80 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: -0.27 Total: 22.50 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: 6.95 Total: 6.09 kcal Atomic # 7 Polarization: -128.01 SS G_CDS: -7.51 Total: -135.52 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -0.06 Total: -20.46 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -81.93 1.13 -80.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086458170.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.059 kcal (2) G-P(sol) polarization free energy of solvation -81.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds