Wall clock time and date at job start Tue Mar 31 2020 04:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86805 * 119.99652 * 2 1 4 4 H 1.48497 * 109.47147 * 269.99674 * 3 2 1 5 5 H 1.48499 * 109.47517 * 30.00141 * 3 2 1 6 6 H 1.48503 * 109.47218 * 150.00121 * 3 2 1 7 7 C 1.38810 * 120.00447 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99443 * 0.02562 * 7 2 1 9 9 N 1.36935 * 120.00426 * 180.02562 * 7 2 1 10 10 C 1.46497 * 120.00275 * 179.97438 * 9 7 2 11 11 H 1.08995 * 110.01476 * 33.60720 * 10 9 7 12 12 C 1.54262 * 110.03307 * 272.16527 * 10 9 7 13 13 C 1.54883 * 104.19963 * 264.32714 * 12 10 9 14 14 C 1.54888 * 102.74559 * 322.05603 * 13 12 10 15 15 H 1.08996 * 110.60389 * 279.20683 * 14 13 12 16 16 C 1.52999 * 110.48605 * 156.62197 * 14 13 12 17 17 N 1.46501 * 109.47219 * 70.22574 * 16 14 13 18 18 C 1.34778 * 119.99739 * 180.02562 * 17 16 14 19 19 O 1.21565 * 120.00207 * 359.97438 * 18 17 16 20 20 C 1.47725 * 119.99599 * 180.02562 * 18 17 16 21 21 C 1.40117 * 120.35477 * 359.97351 * 20 18 17 22 22 N 1.31248 * 121.15282 * 180.02562 * 21 20 18 23 23 C 1.32726 * 121.80115 * 0.02562 * 22 21 20 24 24 N 1.37114 * 133.40401 * 180.02562 * 23 22 21 25 25 H 0.97003 * 126.59478 * 359.97438 * 24 23 22 26 26 N 1.40189 * 106.81637 * 179.97438 * 24 23 22 27 27 N 1.28661 * 109.51165 * 0.02598 * 26 24 23 28 28 C 1.35331 * 110.00233 * 359.97438 * 27 26 24 29 29 C 1.39435 * 120.35021 * 180.02562 * 20 18 17 30 30 C 1.53876 * 110.03372 * 154.99922 * 10 9 7 31 31 H 0.97005 * 120.00106 * 0.02562 * 1 2 3 32 32 H 0.97005 * 120.00022 * 359.97438 * 9 7 2 33 33 H 1.08999 * 110.48846 * 23.00402 * 12 10 9 34 34 H 1.08999 * 110.48628 * 145.51019 * 12 10 9 35 35 H 1.09003 * 110.75847 * 203.74557 * 13 12 10 36 36 H 1.08994 * 110.75969 * 80.37107 * 13 12 10 37 37 H 1.09003 * 109.47512 * 310.22502 * 16 14 13 38 38 H 1.09008 * 109.47236 * 190.22596 * 16 14 13 39 39 H 0.96992 * 119.99806 * 0.02562 * 17 16 14 40 40 H 1.08005 * 119.42004 * 0.02562 * 21 20 18 41 41 H 1.08004 * 120.94914 * 359.70070 * 29 20 18 42 42 H 1.09005 * 110.02908 * 0.02562 * 30 10 9 43 43 H 1.08994 * 110.03265 * 238.57104 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6528 0.7000 6 1 3.5477 1.4404 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1122 -2.4707 0.0000 11 1 3.5603 -3.2202 -0.5672 12 6 4.3284 -2.9561 1.4482 13 6 5.7461 -2.4488 1.8112 14 6 6.5278 -2.6434 0.4883 15 1 6.8453 -3.6804 0.3794 16 6 7.7365 -1.7067 0.4378 17 7 8.7398 -2.1513 1.4084 18 6 9.8964 -1.4723 1.5409 19 8 10.1074 -0.4913 0.8547 20 6 10.9083 -1.9210 2.5193 21 6 10.6730 -3.0510 3.3136 22 7 11.5608 -3.4631 4.1879 23 6 12.7163 -2.8335 4.3613 24 7 13.7918 -3.0479 5.1843 25 1 13.8899 -3.7618 5.8337 26 7 14.7227 -2.0370 4.9068 27 7 14.2574 -1.2645 3.9892 28 6 13.0314 -1.6891 3.6043 29 6 12.1072 -1.2237 2.6628 30 6 5.5106 -2.2719 -0.6104 31 1 -0.4850 0.8401 -0.0004 32 1 3.8647 -0.3620 0.0004 33 1 3.5844 -2.5170 2.1129 34 1 4.2865 -4.0442 1.4962 35 1 6.1800 -3.0523 2.6086 36 1 5.7194 -1.3962 2.0929 37 1 7.4205 -0.6922 0.6808 38 1 8.1673 -1.7231 -0.5634 39 1 8.5715 -2.9343 1.9556 40 1 9.7448 -3.5923 3.2043 41 1 12.3180 -0.3516 2.0616 42 1 5.6444 -1.2314 -0.9062 43 1 5.6377 -2.9255 -1.4733 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086717613.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:18 Heat of formation + Delta-G solvation = 97.600364 kcal Electronic energy + Delta-G solvation = -26697.848637 eV Core-core repulsion = 22780.261543 eV Total energy + Delta-G solvation = -3917.587094 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.98045 -40.47299 -38.89794 -38.20283 -35.26171 -34.59818 -33.47039 -32.32737 -31.59255 -30.85214 -29.17596 -27.73353 -25.72365 -25.16274 -23.83429 -23.29120 -22.84467 -21.37014 -20.19156 -19.44445 -19.30940 -18.87280 -17.62023 -17.54771 -17.03611 -16.73274 -16.16495 -15.60718 -15.17372 -14.85132 -14.55248 -14.31378 -13.95704 -13.88752 -13.78347 -13.38492 -13.13375 -13.11241 -12.76361 -12.56716 -12.43258 -12.12056 -11.90812 -11.41096 -11.03298 -10.82726 -10.74974 -10.63838 -10.50863 -10.40458 -10.39139 -10.10709 -9.97744 -9.96630 -9.72512 -9.59243 -9.31155 -8.91840 -7.26276 -5.77883 -3.13065 -0.42137 0.00042 1.38106 1.44866 2.29390 2.63374 3.10575 3.22669 3.37449 3.40566 3.45877 3.59340 3.63942 3.96541 4.04420 4.36213 4.58531 4.62199 4.72030 4.78518 4.90889 5.07502 5.16705 5.35994 5.42274 5.45942 5.53362 5.59940 5.65935 5.81498 5.89385 5.95817 6.01931 6.03027 6.15054 6.17696 6.25987 6.48191 6.60102 6.76760 6.81161 6.96375 7.09794 7.14732 7.79605 7.99910 8.41756 9.20809 9.93560 10.13153 11.40442 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.024170 B = 0.002076 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.182973 B =13486.139552 C =13887.710763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.243 4.243 8 H 0.090 0.910 9 N -0.745 5.745 10 C 0.179 3.821 11 H 0.058 0.942 12 C -0.146 4.146 13 C -0.116 4.116 14 C -0.105 4.105 15 H 0.079 0.921 16 C 0.125 3.875 17 N -0.718 5.718 18 C 0.567 3.433 19 O -0.528 6.528 20 C -0.206 4.206 21 C 0.214 3.786 22 N -0.487 5.487 23 C 0.294 3.706 24 N -0.482 5.482 25 H 0.455 0.545 26 N 0.021 4.979 27 N -0.190 5.190 28 C -0.074 4.074 29 C 0.085 3.915 30 C -0.124 4.124 31 H 0.259 0.741 32 H 0.360 0.640 33 H 0.074 0.926 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.399 0.601 40 H 0.180 0.820 41 H 0.168 0.832 42 H 0.069 0.931 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.033 -10.119 8.426 30.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.373 4.373 8 H 0.108 0.892 9 N -0.388 5.388 10 C 0.069 3.931 11 H 0.076 0.924 12 C -0.187 4.187 13 C -0.153 4.153 14 C -0.124 4.124 15 H 0.097 0.903 16 C 0.003 3.997 17 N -0.369 5.369 18 C 0.352 3.648 19 O -0.405 6.405 20 C -0.215 4.215 21 C 0.041 3.959 22 N -0.200 5.200 23 C 0.049 3.951 24 N -0.207 5.207 25 H 0.303 0.697 26 N 0.038 4.962 27 N -0.071 5.071 28 C -0.200 4.200 29 C 0.055 3.945 30 C -0.163 4.163 31 H 0.069 0.931 32 H 0.193 0.807 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.234 0.766 40 H 0.196 0.804 41 H 0.185 0.815 42 H 0.088 0.912 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 28.213 -9.563 8.766 31.053 hybrid contribution -0.262 0.600 0.175 0.678 sum 27.951 -8.963 8.941 30.685 Atomic orbital electron populations 1.69700 1.05123 1.25803 1.57575 1.24678 0.95225 0.97211 1.02099 0.86572 0.79223 0.85030 0.77813 1.21090 1.21838 1.20280 1.19084 0.80724 0.94635 1.42874 0.89241 1.42905 1.03938 1.01909 1.90016 1.20772 0.90118 0.89199 0.92997 0.92426 1.23087 0.95923 0.99098 1.00545 1.22543 0.96260 1.01315 0.95225 1.22275 0.93861 0.98747 0.97553 0.90250 1.21623 0.87278 0.98901 0.91942 1.45914 1.17537 1.31629 1.41832 1.17674 0.81467 0.83293 0.82362 1.90840 1.78183 1.26027 1.45481 1.20798 0.97373 1.00199 1.03118 1.23089 0.95963 0.90703 0.86180 1.66692 1.00241 1.31773 1.21333 1.19603 0.89990 0.93206 0.92296 1.47574 1.12226 1.27302 1.33627 0.69651 1.81774 1.10209 0.93953 1.10292 1.74925 1.07365 1.18985 1.05835 1.20409 0.95838 0.99159 1.04546 1.21115 0.87670 0.96181 0.89574 1.22492 0.94797 1.02007 0.96964 0.93091 0.80664 0.90691 0.92830 0.92647 0.91440 0.90728 0.91049 0.76552 0.80353 0.81456 0.91193 0.91517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.98 13.97 55.49 0.78 -28.20 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 3 Si 0.88 21.85 27.74 -169.99 -4.71 17.14 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 7 C -0.24 -6.63 10.44 -15.06 -0.16 -6.79 16 8 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 9 N -0.74 -16.65 4.88 -52.35 -0.26 -16.90 16 10 C 0.18 3.10 3.55 -66.82 -0.24 2.87 16 11 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 12 C -0.15 -2.21 6.54 -25.08 -0.16 -2.37 16 13 C -0.12 -1.35 6.19 -24.74 -0.15 -1.51 16 14 C -0.11 -1.07 2.89 -88.96 -0.26 -1.33 16 15 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 16 C 0.13 1.26 4.96 -4.04 -0.02 1.24 16 17 N -0.72 -5.65 5.40 -61.28 -0.33 -5.98 16 18 C 0.57 5.47 7.77 -12.38 -0.10 5.38 16 19 O -0.53 -7.20 16.39 5.31 0.09 -7.11 16 20 C -0.21 -1.57 5.88 -104.87 -0.62 -2.19 16 21 C 0.21 1.28 10.69 -17.10 -0.18 1.09 16 22 N -0.49 -3.64 10.37 -12.03 -0.12 -3.76 16 23 C 0.29 2.41 8.49 -155.92 -1.32 1.08 16 24 N -0.48 -3.16 7.52 31.15 0.23 -2.92 16 25 H 0.46 1.38 8.96 -182.53 -1.64 -0.26 16 26 N 0.02 0.18 13.82 60.35 0.83 1.02 16 27 N -0.19 -1.90 12.40 32.17 0.40 -1.50 16 28 C -0.07 -0.68 7.27 -84.74 -0.62 -1.29 16 29 C 0.09 0.71 9.75 -38.52 -0.38 0.34 16 30 C -0.12 -1.65 6.14 -25.61 -0.16 -1.80 16 31 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 32 H 0.36 8.00 5.38 -40.82 -0.22 7.78 16 33 H 0.07 1.36 8.04 -51.93 -0.42 0.94 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.91 7.96 -51.93 -0.41 0.49 16 37 H 0.07 0.89 8.02 -51.93 -0.42 0.48 16 38 H 0.07 0.74 8.14 -51.92 -0.42 0.31 16 39 H 0.40 1.93 6.48 -40.82 -0.26 1.66 16 40 H 0.18 0.44 6.39 -52.48 -0.34 0.10 16 41 H 0.17 1.32 7.71 -52.48 -0.40 0.91 16 42 H 0.07 1.00 7.31 -51.93 -0.38 0.63 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 360.72 15.07 5.44 5.44 Total: -1.00 -34.79 360.72 -8.73 -43.51 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -6.61 Total: 4.55 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -4.45 Total: -5.28 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: 1.53 Total: -58.25 kcal Atomic # 8 Polarization: -7.20 SS G_CDS: 0.09 Total: -7.11 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.14 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.79 -8.73 -43.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086717613.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.114 kcal (2) G-P(sol) polarization free energy of solvation -34.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds