Wall clock time and date at job start Tue Mar 31 2020 04:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48501 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47102 * 299.99508 * 3 2 1 6 6 H 1.48500 * 109.47389 * 59.99856 * 3 2 1 7 7 C 1.38812 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99612 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.67274 * 31.77236 * 10 9 7 12 12 C 1.54885 * 110.76220 * 268.32842 * 10 9 7 13 13 C 1.54263 * 104.19972 * 203.74728 * 12 10 9 14 14 C 1.53872 * 106.59900 * 23.61133 * 13 12 10 15 15 H 1.09006 * 110.07030 * 240.69410 * 14 13 12 16 16 C 1.52997 * 110.03375 * 119.28633 * 14 13 12 17 17 N 1.46500 * 109.47246 * 67.83286 * 16 14 13 18 18 C 1.34771 * 119.99911 * 180.02562 * 17 16 14 19 19 O 1.21537 * 120.00395 * 359.97438 * 18 17 16 20 20 C 1.47876 * 120.00003 * 180.02562 * 18 17 16 21 21 C 1.39463 * 121.11375 * 359.97438 * 20 18 17 22 22 C 1.38618 * 119.37482 * 180.02562 * 21 20 18 23 23 N 1.31585 * 121.63819 * 0.02562 * 22 21 20 24 24 C 1.32216 * 121.86663 * 359.97438 * 23 22 21 25 25 N 1.37211 * 134.67350 * 180.02562 * 24 23 22 26 26 H 0.96993 * 125.86909 * 359.96659 * 25 24 23 27 27 N 1.28784 * 108.25939 * 179.97438 * 25 24 23 28 28 N 1.28688 * 111.75743 * 359.97438 * 27 25 24 29 29 C 1.34393 * 109.15457 * 359.73344 * 28 27 25 30 30 C 1.54264 * 106.59758 * 359.97438 * 14 13 12 31 31 H 0.97005 * 120.00046 * 0.02562 * 1 2 3 32 32 H 0.96995 * 120.00043 * 359.72565 * 9 7 2 33 33 H 1.08993 * 110.48700 * 322.43021 * 12 10 9 34 34 H 1.09004 * 110.48334 * 85.06845 * 12 10 9 35 35 H 1.09009 * 110.03267 * 264.32650 * 13 12 10 36 36 H 1.08998 * 110.07503 * 142.91787 * 13 12 10 37 37 H 1.08996 * 109.46994 * 187.83456 * 16 14 13 38 38 H 1.08999 * 109.47012 * 307.83081 * 16 14 13 39 39 H 0.97001 * 119.99972 * 0.02562 * 17 16 14 40 40 H 1.07998 * 120.30972 * 359.97438 * 21 20 18 41 41 H 1.08001 * 119.18243 * 179.97438 * 22 21 20 42 42 H 1.09005 * 110.48840 * 217.71210 * 30 14 13 43 43 H 1.08997 * 110.48668 * 95.06883 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6567 0.0005 11 1 3.0013 -3.5564 0.5375 12 6 2.2960 -4.1533 -1.4471 13 6 2.4851 -5.6771 -1.2982 14 6 1.7855 -6.0809 0.0114 15 1 2.5070 -6.5183 0.7015 16 6 0.6658 -7.0821 -0.2797 17 7 1.2478 -8.3463 -0.7373 18 6 0.4456 -9.3815 -1.0549 19 8 -0.7607 -9.2667 -0.9613 20 6 1.0331 -10.6578 -1.5162 21 6 2.4139 -10.8154 -1.6317 22 6 2.9258 -12.0273 -2.0684 23 7 2.1407 -13.0367 -2.3784 24 6 0.8243 -12.9499 -2.2900 25 7 -0.2178 -13.8078 -2.5364 26 1 -0.1392 -14.7215 -2.8523 27 7 -1.3181 -13.1913 -2.2762 28 7 -1.1068 -11.9874 -1.8737 29 6 0.2170 -11.7571 -1.8478 30 6 1.1962 -4.7884 0.6129 31 1 -0.4850 0.8401 -0.0004 32 1 0.3556 -2.3881 0.0042 33 1 1.4301 -3.9357 -2.0722 34 1 3.1934 -3.6965 -1.8644 35 1 3.5469 -5.9180 -1.2440 36 1 2.0275 -6.1950 -2.1410 37 1 0.0884 -7.2556 0.6284 38 1 0.0125 -6.6813 -1.0546 39 1 2.2106 -8.4381 -0.8117 40 1 3.0781 -10.0006 -1.3841 41 1 3.9956 -12.1458 -2.1571 42 1 1.2906 -4.7953 1.6989 43 1 0.1525 -4.6729 0.3206 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086754081.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:41 Heat of formation + Delta-G solvation = 99.260155 kcal Electronic energy + Delta-G solvation = -26735.587601 eV Core-core repulsion = 22818.072480 eV Total energy + Delta-G solvation = -3917.515121 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.88471 -40.37870 -39.17056 -38.11584 -35.08107 -34.66627 -33.52414 -32.45320 -31.32621 -30.70184 -29.06346 -27.41813 -26.08091 -24.54489 -24.39888 -23.29367 -22.99706 -21.39987 -20.01705 -19.53136 -19.18045 -18.86892 -17.91152 -17.12879 -17.09210 -16.39383 -15.85685 -15.78306 -15.28682 -14.95438 -14.89286 -14.17682 -13.89155 -13.80157 -13.43682 -13.34277 -12.91250 -12.80861 -12.77842 -12.23136 -12.12812 -11.96407 -11.86162 -11.19282 -10.91500 -10.80831 -10.66866 -10.60947 -10.55926 -10.29642 -10.13414 -9.99644 -9.84793 -9.82544 -9.66758 -9.61520 -9.22482 -8.88811 -6.94750 -5.76834 -3.05536 -0.47148 0.31478 1.64116 1.72507 2.44097 2.67823 3.18161 3.26295 3.42823 3.48171 3.50705 3.69996 3.90230 3.97994 4.20911 4.56068 4.59203 4.73363 4.89153 4.92225 4.94196 5.01978 5.16067 5.49664 5.51524 5.59756 5.66150 5.70184 5.86561 5.93792 5.97009 6.01594 6.07766 6.16573 6.29049 6.31782 6.43554 6.55158 6.69163 6.85868 6.92327 7.09461 7.18914 7.69195 7.70490 7.90549 8.41983 9.52889 10.11872 10.45595 11.45787 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.033116 B = 0.001908 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.304273 B =14668.699872 C =15220.111411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.721 5.721 10 C 0.177 3.823 11 H 0.056 0.944 12 C -0.144 4.144 13 C -0.121 4.121 14 C -0.101 4.101 15 H 0.075 0.925 16 C 0.126 3.874 17 N -0.717 5.717 18 C 0.547 3.453 19 O -0.498 6.498 20 C -0.006 4.006 21 C -0.142 4.142 22 C 0.162 3.838 23 N -0.459 5.459 24 C 0.214 3.786 25 N -0.405 5.405 26 H 0.458 0.542 27 N 0.004 4.996 28 N -0.208 5.208 29 C 0.003 3.997 30 C -0.123 4.123 31 H 0.255 0.745 32 H 0.384 0.616 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.399 0.601 40 H 0.160 0.840 41 H 0.184 0.816 42 H 0.064 0.936 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.419 -29.593 -4.168 31.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.360 5.360 10 C 0.066 3.934 11 H 0.074 0.926 12 C -0.185 4.185 13 C -0.159 4.159 14 C -0.120 4.120 15 H 0.093 0.907 16 C 0.003 3.997 17 N -0.370 5.370 18 C 0.331 3.669 19 O -0.371 6.371 20 C -0.022 4.022 21 C -0.165 4.165 22 C -0.010 4.010 23 N -0.173 5.173 24 C -0.030 4.030 25 N -0.135 5.135 26 H 0.306 0.694 27 N 0.021 4.979 28 N -0.084 5.084 29 C -0.127 4.127 30 C -0.163 4.163 31 H 0.065 0.935 32 H 0.218 0.782 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.234 0.766 40 H 0.177 0.823 41 H 0.201 0.799 42 H 0.083 0.917 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.323 -30.167 -4.311 31.123 hybrid contribution 1.480 1.001 -0.130 1.792 sum 7.803 -29.167 -4.441 30.517 Atomic orbital electron populations 1.69671 1.05099 1.25558 1.57685 1.24760 0.95521 0.97733 1.03060 0.86134 0.78755 0.84214 0.77177 1.20577 1.21906 1.21896 1.19301 0.91009 0.84160 1.42586 0.91131 1.42401 1.05796 0.99796 1.88041 1.21152 0.94306 0.85616 0.92288 0.92644 1.23075 1.01396 0.92708 1.01335 1.22224 0.99352 0.98180 0.96171 1.21971 0.96456 0.95616 0.97965 0.90701 1.21668 0.96167 0.81574 1.00252 1.45945 1.10076 1.13225 1.67715 1.17874 0.86950 0.82976 0.79122 1.90905 1.13502 1.82139 1.50568 1.19739 0.92332 0.92809 0.97324 1.22442 0.93808 1.00242 1.00046 1.22869 0.99826 0.86587 0.91728 1.66330 1.01222 1.33013 1.16685 1.19881 0.89939 0.90009 1.03144 1.44737 1.02324 1.15674 1.50812 0.69361 1.78297 1.07687 1.01838 1.10091 1.75618 1.13197 1.04920 1.14644 1.20145 0.92100 0.95036 1.05386 1.22616 1.00590 0.93231 0.99816 0.93540 0.78168 0.91818 0.92567 0.92368 0.92351 0.91047 0.90676 0.76565 0.82285 0.79904 0.91681 0.91154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.08 13.06 55.49 0.72 -27.36 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 7 C -0.24 -6.54 9.96 -15.06 -0.15 -6.69 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.72 -17.67 5.23 -51.51 -0.27 -17.93 16 10 C 0.18 3.31 3.56 -65.95 -0.23 3.07 16 11 H 0.06 1.05 8.09 -51.93 -0.42 0.63 16 12 C -0.14 -2.37 6.51 -25.08 -0.16 -2.53 16 13 C -0.12 -1.41 6.18 -25.62 -0.16 -1.57 16 14 C -0.10 -1.13 2.96 -89.51 -0.27 -1.39 16 15 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 16 C 0.13 1.43 4.69 -4.04 -0.02 1.41 16 17 N -0.72 -6.59 5.30 -61.25 -0.32 -6.92 16 18 C 0.55 6.52 7.79 -12.32 -0.10 6.42 16 19 O -0.50 -8.25 16.27 5.33 0.09 -8.17 16 20 C -0.01 -0.05 5.93 -104.50 -0.62 -0.67 16 21 C -0.14 -0.71 9.61 -38.99 -0.37 -1.08 16 22 C 0.16 0.73 11.14 -17.52 -0.20 0.53 16 23 N -0.46 -3.36 10.35 -12.38 -0.13 -3.49 16 24 C 0.21 1.95 8.56 -156.20 -1.34 0.61 16 25 N -0.41 -3.06 7.06 31.11 0.22 -2.84 16 26 H 0.46 1.49 8.96 -190.26 -1.71 -0.22 16 27 N 0.00 0.04 13.29 60.35 0.80 0.84 16 28 N -0.21 -2.84 11.92 32.23 0.38 -2.46 16 29 C 0.00 0.03 6.97 -84.72 -0.59 -0.56 16 30 C -0.12 -1.86 5.98 -25.08 -0.15 -2.01 16 31 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.38 10.09 7.76 -40.82 -0.32 9.78 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 36 H 0.06 0.65 7.61 -51.93 -0.40 0.25 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.40 2.29 6.50 -40.82 -0.27 2.02 16 40 H 0.16 0.21 6.53 -52.49 -0.34 -0.13 16 41 H 0.18 0.06 8.06 -52.49 -0.42 -0.37 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.07 1.13 7.73 -51.93 -0.40 0.73 16 LS Contribution 363.07 15.07 5.47 5.47 Total: -1.00 -36.74 363.07 -9.28 -46.02 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -6.77 Total: 4.62 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -4.45 Total: -4.98 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: 1.41 Total: -60.16 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.09 Total: -8.17 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.74 -9.28 -46.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086754081.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.277 kcal (2) G-P(sol) polarization free energy of solvation -36.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds