Wall clock time and date at job start Tue Mar 31 2020 05:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46979 * 2 1 4 4 H 1.09004 * 109.99988 * 305.03066 * 3 2 1 5 5 C 1.54334 * 109.99095 * 183.99643 * 3 2 1 6 6 H 1.08998 * 110.66495 * 337.04366 * 5 3 2 7 7 N 1.46496 * 110.85456 * 100.19487 * 5 3 2 8 8 C 1.34772 * 120.00412 * 200.14772 * 7 5 3 9 9 O 1.21569 * 119.99676 * 0.02562 * 8 7 5 10 10 C 1.47721 * 120.00559 * 179.97438 * 8 7 5 11 11 C 1.40121 * 120.34538 * 359.97438 * 10 8 7 12 12 N 1.31264 * 121.14866 * 179.97438 * 11 10 8 13 13 C 1.32720 * 121.79536 * 359.97438 * 12 11 10 14 14 N 1.37123 * 133.40053 * 180.02562 * 13 12 11 15 15 H 0.96999 * 126.59304 * 359.97438 * 14 13 12 16 16 N 1.40197 * 106.81646 * 179.97438 * 14 13 12 17 17 N 1.28662 * 109.50850 * 359.97438 * 16 14 13 18 18 C 1.35331 * 110.00327 * 359.97438 * 17 16 14 19 19 C 1.39426 * 120.35345 * 179.72126 * 10 8 7 20 20 C 1.55153 * 103.02023 * 218.66505 * 5 3 2 21 21 C 1.54912 * 101.58360 * 35.30104 * 20 5 3 22 22 N 1.47015 * 109.88624 * 66.12381 * 3 2 1 23 23 C 1.36933 * 125.64947 * 298.39962 * 22 3 2 24 24 H 1.08001 * 120.00046 * 332.38152 * 23 22 3 25 25 C 1.38814 * 120.00498 * 152.38495 * 23 22 3 26 26 N 1.31620 * 120.00633 * 170.70581 * 25 23 22 27 27 Si 1.86808 * 119.99668 * 350.70266 * 25 23 22 28 28 H 1.48495 * 109.47220 * 185.76839 * 27 25 23 29 29 H 1.48500 * 109.46925 * 305.77227 * 27 25 23 30 30 H 1.48506 * 109.46990 * 65.76643 * 27 25 23 31 31 H 1.09002 * 109.47248 * 292.50042 * 1 2 3 32 32 H 1.09001 * 109.47258 * 52.49654 * 1 2 3 33 33 H 1.08997 * 109.47298 * 172.49588 * 1 2 3 34 34 H 1.09002 * 109.47037 * 239.99793 * 2 1 3 35 35 H 1.08993 * 109.46731 * 119.99702 * 2 1 3 36 36 H 0.97000 * 119.99842 * 20.14592 * 7 5 3 37 37 H 1.08000 * 119.43174 * 359.97438 * 11 10 8 38 38 H 1.07996 * 120.95511 * 0.02562 * 19 10 8 39 39 H 1.09002 * 111.00582 * 277.23180 * 20 5 3 40 40 H 1.08995 * 111.00809 * 153.37892 * 20 5 3 41 41 H 1.08999 * 110.37030 * 204.15360 * 21 20 5 42 42 H 1.09001 * 110.36222 * 81.83137 * 21 20 5 43 43 H 0.97002 * 119.99600 * 5.61489 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6099 1.9900 -0.8387 5 6 3.5799 1.4577 -0.1011 6 1 3.9976 0.5135 0.2482 7 7 4.0097 1.7364 -1.4736 8 6 5.2535 1.4029 -1.8711 9 8 6.0187 0.8703 -1.0908 10 6 5.6868 1.6833 -3.2552 11 6 4.8103 2.2954 -4.1611 12 7 5.1790 2.5523 -5.3944 13 6 6.3914 2.2474 -5.8398 14 7 7.0173 2.4026 -7.0500 15 1 6.6380 2.7975 -7.8506 16 7 8.3107 1.8809 -6.9075 17 7 8.4673 1.4417 -5.7084 18 6 7.3339 1.6324 -4.9939 19 6 6.9738 1.3466 -3.6725 20 6 3.9809 2.6192 0.8463 21 6 2.9165 2.4902 1.9644 22 7 1.6790 2.1005 1.2642 23 6 0.4047 2.3111 1.7189 24 1 -0.4094 2.4126 1.0165 25 6 0.1591 2.3942 3.0826 26 7 -1.0234 2.7763 3.5164 27 14 1.5069 1.9635 4.3022 28 1 0.9562 1.9971 5.6809 29 1 2.0238 0.6027 4.0086 30 1 2.6124 2.9485 4.1866 31 1 -0.3634 0.3933 0.9494 32 1 -0.3634 0.6257 -0.8153 33 1 -0.3634 -1.0188 -0.1342 34 1 1.8933 -0.5139 -0.8900 35 1 1.8932 -0.5138 0.8900 36 1 3.3991 2.1610 -2.0962 37 1 3.8141 2.5604 -3.8390 38 1 7.6723 0.8774 -2.9956 39 1 3.9013 3.5813 0.3403 40 1 4.9849 2.4704 1.2436 41 1 2.7808 3.4457 2.4710 42 1 3.2075 1.7194 2.6780 43 1 -1.7472 2.9213 2.8871 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087604130.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:35 Heat of formation + Delta-G solvation = 118.705746 kcal Electronic energy + Delta-G solvation = -27818.263284 eV Core-core repulsion = 23901.591388 eV Total energy + Delta-G solvation = -3916.671896 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.87350 -40.38551 -38.89866 -37.91906 -34.54919 -34.43453 -32.59846 -32.43224 -32.17242 -31.14768 -29.19184 -27.28930 -25.46786 -24.94867 -23.76854 -23.18847 -22.13602 -21.58345 -20.60550 -19.73663 -19.19890 -18.62330 -17.58341 -17.30195 -16.92639 -16.62135 -16.09884 -15.13608 -15.04186 -14.73139 -14.39244 -13.91651 -13.75495 -13.58892 -13.45063 -13.27439 -13.14540 -13.03268 -12.53283 -12.45436 -12.24897 -12.01395 -11.81230 -11.51104 -11.32277 -10.94845 -10.60507 -10.55177 -10.35040 -10.16702 -10.02169 -9.95088 -9.86665 -9.58822 -9.51299 -9.06123 -8.98198 -8.57595 -7.11243 -6.28823 -3.39504 -0.31517 0.12832 1.47982 1.54983 2.44503 2.80370 3.25121 3.34855 3.40307 3.49893 3.67374 3.71076 3.75180 4.09726 4.17950 4.50272 4.56224 4.77450 4.91710 5.08920 5.16157 5.18754 5.29609 5.32645 5.52980 5.59762 5.73217 5.81971 5.86703 6.02444 6.08689 6.12923 6.21390 6.32465 6.46901 6.54236 6.56691 6.66097 6.69121 6.92776 6.95089 7.23701 7.26950 7.35229 7.78836 8.01164 8.30057 8.97143 9.48102 10.20282 11.12239 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.026814 B = 0.002608 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.961038 B =10733.310532 C =11141.022936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C 0.157 3.843 4 H 0.042 0.958 5 C 0.133 3.867 6 H 0.099 0.901 7 N -0.707 5.707 8 C 0.568 3.432 9 O -0.529 6.529 10 C -0.203 4.203 11 C 0.215 3.785 12 N -0.487 5.487 13 C 0.294 3.706 14 N -0.483 5.483 15 H 0.455 0.545 16 N 0.019 4.981 17 N -0.190 5.190 18 C -0.075 4.075 19 C 0.084 3.916 20 C -0.140 4.140 21 C 0.109 3.891 22 N -0.600 5.600 23 C -0.313 4.313 24 H 0.075 0.925 25 C -0.016 4.016 26 N -0.926 5.926 27 Si 1.066 2.934 28 H -0.300 1.300 29 H -0.291 1.291 30 H -0.284 1.284 31 H 0.092 0.908 32 H 0.038 0.962 33 H 0.030 0.970 34 H 0.042 0.958 35 H 0.058 0.942 36 H 0.398 0.602 37 H 0.181 0.819 38 H 0.168 0.832 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.027 0.973 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.271 -1.103 -18.628 22.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C 0.050 3.950 4 H 0.059 0.941 5 C 0.029 3.971 6 H 0.117 0.883 7 N -0.358 5.358 8 C 0.354 3.646 9 O -0.406 6.406 10 C -0.212 4.212 11 C 0.041 3.959 12 N -0.201 5.201 13 C 0.049 3.951 14 N -0.208 5.208 15 H 0.303 0.697 16 N 0.036 4.964 17 N -0.072 5.072 18 C -0.200 4.200 19 C 0.053 3.947 20 C -0.180 4.180 21 C -0.016 4.016 22 N -0.327 5.327 23 C -0.440 4.440 24 H 0.092 0.908 25 C -0.217 4.217 26 N -0.566 5.566 27 Si 0.898 3.102 28 H -0.228 1.228 29 H -0.218 1.218 30 H -0.212 1.212 31 H 0.111 0.889 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.234 0.766 37 H 0.197 0.803 38 H 0.185 0.815 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.045 0.955 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 14.923 -1.394 -17.722 23.210 hybrid contribution -1.338 0.282 -1.676 2.163 sum 13.585 -1.111 -19.398 23.708 Atomic orbital electron populations 1.21907 0.95484 0.99104 1.04325 1.21888 0.97192 0.97258 0.99985 1.21201 0.89488 0.92662 0.91690 0.94089 1.22206 0.95844 0.99418 0.79626 0.88323 1.45935 1.13711 1.61769 1.14390 1.17643 0.82333 0.78877 0.85790 1.90820 1.52885 1.42668 1.54218 1.20835 0.95906 1.07622 0.96815 1.23137 0.98930 0.88050 0.85736 1.66710 1.14150 1.22211 1.17066 1.19607 0.91667 0.96133 0.87729 1.47556 1.11365 1.50729 1.11186 0.69717 1.81757 0.94092 1.08860 1.11728 1.74909 1.20747 1.12977 0.98529 1.20406 0.92553 1.09768 0.97267 1.21104 0.94463 0.87996 0.91089 1.23151 0.99234 0.98105 0.97503 1.22205 0.86508 0.98764 0.94155 1.44742 1.01795 1.66045 1.20115 1.19976 0.83179 1.48443 0.92444 0.90779 1.26109 1.01571 0.97883 0.96099 1.70932 1.02295 1.45974 1.37362 0.83857 0.74218 0.76618 0.75513 1.22796 1.21844 1.21155 0.88895 0.94285 0.95044 0.93938 0.92338 0.76608 0.80274 0.81467 0.91000 0.91046 0.91594 0.95534 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.05 37.16 0.34 -2.41 16 2 C -0.12 -2.11 5.47 -26.73 -0.15 -2.26 16 3 C 0.16 2.72 3.00 -66.95 -0.20 2.52 16 4 H 0.04 0.69 7.69 -51.93 -0.40 0.29 16 5 C 0.13 1.99 2.76 -66.09 -0.18 1.81 16 6 H 0.10 1.59 7.40 -51.93 -0.38 1.20 16 7 N -0.71 -7.96 5.16 -53.01 -0.27 -8.24 16 8 C 0.57 6.67 7.77 -12.39 -0.10 6.58 16 9 O -0.53 -8.06 16.12 5.30 0.09 -7.97 16 10 C -0.20 -1.88 5.88 -104.87 -0.62 -2.50 16 11 C 0.22 1.66 10.69 -17.09 -0.18 1.48 16 12 N -0.49 -4.35 10.37 -12.03 -0.12 -4.48 16 13 C 0.29 2.75 8.49 -155.92 -1.32 1.43 16 14 N -0.48 -3.64 7.53 31.15 0.23 -3.41 16 15 H 0.45 1.82 8.96 -182.52 -1.64 0.18 16 16 N 0.02 0.18 13.82 60.35 0.83 1.01 16 17 N -0.19 -2.07 12.40 32.17 0.40 -1.67 16 18 C -0.07 -0.76 7.27 -84.74 -0.62 -1.38 16 19 C 0.08 0.81 9.75 -38.52 -0.38 0.43 16 20 C -0.14 -2.24 6.77 -24.58 -0.17 -2.40 16 21 C 0.11 2.18 4.50 -2.53 -0.01 2.17 16 22 N -0.60 -13.02 2.89 -162.57 -0.47 -13.49 16 23 C -0.31 -8.02 7.70 -15.06 -0.12 -8.13 16 24 H 0.07 2.02 7.42 -52.49 -0.39 1.63 16 25 C -0.02 -0.43 5.50 -17.43 -0.10 -0.52 16 26 N -0.93 -27.55 13.70 55.49 0.76 -26.79 16 27 Si 1.07 25.51 24.68 -169.99 -4.19 21.32 16 28 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 29 H -0.29 -6.77 7.03 56.52 0.40 -6.38 16 30 H -0.28 -6.24 5.55 56.52 0.31 -5.92 16 31 H 0.09 2.05 5.49 -51.93 -0.28 1.77 16 32 H 0.04 0.67 8.13 -51.93 -0.42 0.25 16 33 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.40 3.36 6.35 -40.82 -0.26 3.10 16 37 H 0.18 0.85 6.39 -52.49 -0.34 0.52 16 38 H 0.17 1.50 7.71 -52.49 -0.40 1.10 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.07 1.40 6.48 -51.93 -0.34 1.06 16 42 H 0.03 0.56 5.48 -51.93 -0.28 0.27 16 43 H 0.26 7.71 8.73 -40.82 -0.36 7.35 16 LS Contribution 347.89 15.07 5.24 5.24 Total: -1.00 -32.26 347.89 -7.80 -40.05 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -6.49 Total: 1.62 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -3.79 Total: -3.20 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: 1.36 Total: -57.06 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: 0.09 Total: -7.97 kcal Atomic # 14 Polarization: 25.51 SS G_CDS: -4.19 Total: 21.32 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.26 -7.80 -40.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087604130.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.758 kcal (2) G-P(sol) polarization free energy of solvation -32.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds