Wall clock time and date at job start Tue Mar 31 2020 05:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46979 * 2 1 4 4 H 1.09004 * 109.99988 * 305.03066 * 3 2 1 5 5 C 1.54334 * 109.99095 * 183.99643 * 3 2 1 6 6 H 1.08998 * 110.66495 * 337.04366 * 5 3 2 7 7 N 1.46496 * 110.85456 * 100.19487 * 5 3 2 8 8 C 1.34772 * 120.00412 * 200.14772 * 7 5 3 9 9 O 1.21569 * 119.99676 * 0.02562 * 8 7 5 10 10 C 1.47721 * 120.00559 * 179.97438 * 8 7 5 11 11 C 1.40121 * 120.34538 * 359.97438 * 10 8 7 12 12 N 1.31264 * 121.14866 * 179.97438 * 11 10 8 13 13 C 1.32720 * 121.79536 * 359.97438 * 12 11 10 14 14 N 1.37123 * 133.40053 * 180.02562 * 13 12 11 15 15 H 0.96999 * 126.59304 * 359.97438 * 14 13 12 16 16 N 1.40197 * 106.81646 * 179.97438 * 14 13 12 17 17 N 1.28662 * 109.50850 * 359.97438 * 16 14 13 18 18 C 1.35331 * 110.00327 * 359.97438 * 17 16 14 19 19 C 1.39426 * 120.35345 * 179.72126 * 10 8 7 20 20 C 1.55153 * 103.02023 * 218.66505 * 5 3 2 21 21 C 1.54912 * 101.58360 * 35.30104 * 20 5 3 22 22 N 1.47015 * 109.88624 * 66.12381 * 3 2 1 23 23 C 1.36933 * 125.64947 * 298.39962 * 22 3 2 24 24 H 1.08001 * 120.00046 * 332.38152 * 23 22 3 25 25 C 1.38814 * 120.00498 * 152.38495 * 23 22 3 26 26 N 1.31620 * 120.00633 * 170.70581 * 25 23 22 27 27 Si 1.86808 * 119.99668 * 350.70266 * 25 23 22 28 28 H 1.48495 * 109.47220 * 185.76839 * 27 25 23 29 29 H 1.48500 * 109.46925 * 305.77227 * 27 25 23 30 30 H 1.48506 * 109.46990 * 65.76643 * 27 25 23 31 31 H 1.09002 * 109.47248 * 292.50042 * 1 2 3 32 32 H 1.09001 * 109.47258 * 52.49654 * 1 2 3 33 33 H 1.08997 * 109.47298 * 172.49588 * 1 2 3 34 34 H 1.09002 * 109.47037 * 239.99793 * 2 1 3 35 35 H 1.08993 * 109.46731 * 119.99702 * 2 1 3 36 36 H 0.97000 * 119.99842 * 20.14592 * 7 5 3 37 37 H 1.08000 * 119.43174 * 359.97438 * 11 10 8 38 38 H 1.07996 * 120.95511 * 0.02562 * 19 10 8 39 39 H 1.09002 * 111.00582 * 277.23180 * 20 5 3 40 40 H 1.08995 * 111.00809 * 153.37892 * 20 5 3 41 41 H 1.08999 * 110.37030 * 204.15360 * 21 20 5 42 42 H 1.09001 * 110.36222 * 81.83137 * 21 20 5 43 43 H 0.97002 * 119.99600 * 5.61489 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6099 1.9900 -0.8387 5 6 3.5799 1.4577 -0.1011 6 1 3.9976 0.5135 0.2482 7 7 4.0097 1.7364 -1.4736 8 6 5.2535 1.4029 -1.8711 9 8 6.0187 0.8703 -1.0908 10 6 5.6868 1.6833 -3.2552 11 6 4.8103 2.2954 -4.1611 12 7 5.1790 2.5523 -5.3944 13 6 6.3914 2.2474 -5.8398 14 7 7.0173 2.4026 -7.0500 15 1 6.6380 2.7975 -7.8506 16 7 8.3107 1.8809 -6.9075 17 7 8.4673 1.4417 -5.7084 18 6 7.3339 1.6324 -4.9939 19 6 6.9738 1.3466 -3.6725 20 6 3.9809 2.6192 0.8463 21 6 2.9165 2.4902 1.9644 22 7 1.6790 2.1005 1.2642 23 6 0.4047 2.3111 1.7189 24 1 -0.4094 2.4126 1.0165 25 6 0.1591 2.3942 3.0826 26 7 -1.0234 2.7763 3.5164 27 14 1.5069 1.9635 4.3022 28 1 0.9562 1.9971 5.6809 29 1 2.0238 0.6027 4.0086 30 1 2.6124 2.9485 4.1866 31 1 -0.3634 0.3933 0.9494 32 1 -0.3634 0.6257 -0.8153 33 1 -0.3634 -1.0188 -0.1342 34 1 1.8933 -0.5139 -0.8900 35 1 1.8932 -0.5138 0.8900 36 1 3.3991 2.1610 -2.0962 37 1 3.8141 2.5604 -3.8390 38 1 7.6723 0.8774 -2.9956 39 1 3.9013 3.5813 0.3403 40 1 4.9849 2.4704 1.2436 41 1 2.7808 3.4457 2.4710 42 1 3.2075 1.7194 2.6780 43 1 -1.7472 2.9213 2.8871 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087604130.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:34 Heat of formation + Delta-G solvation = 94.140957 kcal Electronic energy + Delta-G solvation = -27819.328494 eV Core-core repulsion = 23901.591388 eV Total energy + Delta-G solvation = -3917.737106 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.56902 -41.36072 -39.94636 -39.03975 -35.78082 -35.19522 -34.24963 -33.95665 -32.91064 -32.08650 -30.68779 -28.68503 -26.44952 -25.82370 -25.12772 -23.89296 -23.78969 -22.66544 -21.74728 -21.09996 -19.88386 -19.62881 -19.39832 -18.19720 -17.77769 -17.32315 -17.24402 -16.69862 -16.12251 -15.91404 -15.41790 -15.21888 -15.08518 -14.82893 -14.64156 -14.40026 -14.20219 -14.00724 -13.77227 -13.61240 -13.42902 -13.18411 -13.12326 -12.94776 -12.72416 -12.43013 -12.14517 -11.80737 -11.72825 -11.53440 -11.50417 -11.27224 -11.06417 -10.74012 -10.56188 -10.55591 -10.34401 -9.99540 -9.01887 -8.38274 -5.44816 -0.99392 -0.59046 0.84359 0.87230 1.47980 1.56849 1.61688 1.74171 1.86966 2.48585 2.60777 2.66636 3.02116 3.05937 3.25501 3.33356 3.43360 3.54877 3.69614 3.77567 3.82470 4.12654 4.18636 4.30166 4.43712 4.46567 4.52336 4.62075 4.65357 4.71106 4.91876 4.93256 4.97520 5.05265 5.10303 5.18440 5.22401 5.36762 5.58927 5.63337 5.68808 5.84820 6.27206 6.27683 6.45626 6.55048 6.93321 7.11110 7.54755 8.24174 9.01001 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.026814 B = 0.002608 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.961038 B =10733.310532 C =11141.022936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.121 4.121 3 C 0.154 3.846 4 H 0.057 0.943 5 C 0.149 3.851 6 H 0.092 0.908 7 N -0.695 5.695 8 C 0.577 3.423 9 O -0.564 6.564 10 C -0.200 4.200 11 C 0.228 3.772 12 N -0.491 5.491 13 C 0.289 3.711 14 N -0.465 5.465 15 H 0.469 0.531 16 N 0.012 4.988 17 N -0.212 5.212 18 C -0.088 4.088 19 C 0.084 3.916 20 C -0.128 4.128 21 C 0.099 3.901 22 N -0.618 5.618 23 C -0.275 4.275 24 H 0.051 0.949 25 C -0.075 4.075 26 N -0.971 5.971 27 Si 1.096 2.904 28 H -0.318 1.318 29 H -0.283 1.283 30 H -0.253 1.253 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.049 0.951 34 H 0.078 0.922 35 H 0.041 0.959 36 H 0.415 0.585 37 H 0.213 0.787 38 H 0.168 0.832 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.051 0.949 42 H 0.023 0.977 43 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.900 -1.146 -21.031 25.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.160 4.160 3 C 0.048 3.952 4 H 0.075 0.925 5 C 0.044 3.956 6 H 0.110 0.890 7 N -0.347 5.347 8 C 0.364 3.636 9 O -0.443 6.443 10 C -0.209 4.209 11 C 0.054 3.946 12 N -0.206 5.206 13 C 0.044 3.956 14 N -0.193 5.193 15 H 0.321 0.679 16 N 0.029 4.971 17 N -0.093 5.093 18 C -0.214 4.214 19 C 0.054 3.946 20 C -0.167 4.167 21 C -0.025 4.025 22 N -0.345 5.345 23 C -0.404 4.404 24 H 0.068 0.932 25 C -0.269 4.269 26 N -0.616 5.616 27 Si 0.924 3.076 28 H -0.248 1.248 29 H -0.210 1.210 30 H -0.178 1.178 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.096 0.904 35 H 0.060 0.940 36 H 0.254 0.746 37 H 0.230 0.770 38 H 0.186 0.814 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.069 0.931 42 H 0.041 0.959 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 16.594 -1.422 -20.226 26.201 hybrid contribution -1.846 0.271 -1.106 2.169 sum 14.748 -1.151 -21.332 25.960 Atomic orbital electron populations 1.21788 0.96533 1.00087 1.01921 1.21856 0.96101 0.97167 1.00880 1.21348 0.91493 0.92592 0.89778 0.92520 1.21799 0.93669 0.98820 0.81341 0.88986 1.45659 1.14044 1.61782 1.13216 1.17807 0.81759 0.77820 0.86223 1.90819 1.53854 1.44222 1.55387 1.20564 0.96070 1.08577 0.95708 1.23614 0.99693 0.86421 0.84884 1.66841 1.13701 1.22550 1.17462 1.19770 0.91803 0.95976 0.88043 1.47555 1.10609 1.49694 1.11413 0.67919 1.81705 0.94928 1.09066 1.11439 1.74896 1.21476 1.13892 0.99044 1.20535 0.92724 1.10504 0.97672 1.21163 0.94766 0.87712 0.90984 1.23063 0.98265 0.99209 0.96207 1.22262 0.86981 0.97754 0.95552 1.44818 1.01038 1.67105 1.21534 1.19777 0.84398 1.44583 0.91630 0.93151 1.27041 1.02407 0.99112 0.98339 1.71024 1.03157 1.50182 1.37187 0.83497 0.73474 0.77612 0.72991 1.24756 1.20964 1.17846 0.93516 0.93499 0.93225 0.90374 0.94002 0.74603 0.77041 0.81447 0.89638 0.89793 0.93069 0.95928 0.94300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.11 9.05 71.98 0.65 -4.46 16 2 C -0.12 -3.81 5.47 30.59 0.17 -3.64 16 3 C 0.15 4.91 3.00 45.35 0.14 5.04 16 4 H 0.06 1.67 7.69 -2.38 -0.02 1.65 16 5 C 0.15 3.93 2.76 46.18 0.13 4.05 16 6 H 0.09 2.65 7.40 -2.39 -0.02 2.63 16 7 N -0.70 -12.70 5.16 -439.90 -2.27 -14.97 16 8 C 0.58 11.54 7.77 86.75 0.67 12.22 16 9 O -0.56 -15.68 16.12 -3.93 -0.06 -15.74 16 10 C -0.20 -3.07 5.88 -20.03 -0.12 -3.18 16 11 C 0.23 2.60 10.69 85.23 0.91 3.51 16 12 N -0.49 -7.10 10.37 -191.97 -1.99 -9.09 16 13 C 0.29 4.70 8.49 134.00 1.14 5.83 16 14 N -0.47 -6.01 7.53 -55.37 -0.42 -6.43 16 15 H 0.47 2.64 8.96 -213.26 -1.91 0.73 16 16 N 0.01 0.21 13.82 37.02 0.51 0.72 16 17 N -0.21 -4.37 12.40 -52.15 -0.65 -5.02 16 18 C -0.09 -1.65 7.27 39.63 0.29 -1.36 16 19 C 0.08 1.45 9.75 22.96 0.22 1.67 16 20 C -0.13 -3.65 6.77 31.99 0.22 -3.44 16 21 C 0.10 3.78 4.50 86.86 0.39 4.17 16 22 N -0.62 -26.02 2.89 -668.25 -1.93 -27.95 16 23 C -0.27 -14.23 7.70 84.03 0.65 -13.58 16 24 H 0.05 2.83 7.42 -2.91 -0.02 2.81 16 25 C -0.08 -4.25 5.50 84.86 0.47 -3.78 16 26 N -0.97 -60.19 13.70 21.65 0.30 -59.89 16 27 Si 1.10 52.12 24.68 68.60 1.69 53.82 16 28 H -0.32 -16.01 7.11 99.48 0.71 -15.30 16 29 H -0.28 -12.86 7.03 99.48 0.70 -12.16 16 30 H -0.25 -10.64 5.55 99.48 0.55 -10.09 16 31 H 0.05 2.08 5.49 -2.39 -0.01 2.06 16 32 H 0.05 1.53 8.13 -2.39 -0.02 1.51 16 33 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.42 4.88 6.35 -92.71 -0.59 4.29 16 37 H 0.21 0.88 6.39 -2.91 -0.02 0.86 16 38 H 0.17 2.79 7.71 -2.91 -0.02 2.77 16 39 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.05 2.09 6.48 -2.39 -0.02 2.07 16 42 H 0.02 0.91 5.48 -2.39 -0.01 0.89 16 43 H 0.25 15.37 8.73 -92.71 -0.81 14.56 16 Total: -1.00 -72.38 347.89 -0.50 -72.89 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -1.61 Total: 8.61 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: 5.92 Total: 3.05 kcal Atomic # 7 Polarization: -116.18 SS G_CDS: -6.44 Total: -122.63 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.06 Total: -15.74 kcal Atomic # 14 Polarization: 52.12 SS G_CDS: 1.69 Total: 53.82 kcal Total: -72.38 -0.50 -72.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087604130.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.028 kcal (2) G-P(sol) polarization free energy of solvation -72.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds