Wall clock time and date at job start Tue Mar 31 2020 05:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47344 * 2 1 4 4 H 1.08997 * 110.00169 * 304.62618 * 3 2 1 5 5 C 1.54337 * 109.99349 * 183.58576 * 3 2 1 6 6 H 1.09009 * 110.51408 * 336.98171 * 5 3 2 7 7 N 1.46497 * 110.84860 * 100.19673 * 5 3 2 8 8 C 1.34773 * 119.99897 * 200.14385 * 7 5 3 9 9 O 1.21546 * 120.00138 * 0.02562 * 8 7 5 10 10 C 1.47875 * 119.99873 * 180.02562 * 8 7 5 11 11 C 1.39450 * 121.11567 * 359.72768 * 10 8 7 12 12 C 1.38621 * 119.37723 * 179.73012 * 11 10 8 13 13 N 1.31593 * 121.63206 * 0.55538 * 12 11 10 14 14 C 1.32199 * 121.86646 * 359.72193 * 13 12 11 15 15 N 1.37216 * 134.67569 * 180.02562 * 14 13 12 16 16 H 0.97004 * 125.86212 * 0.02562 * 15 14 13 17 17 N 1.28774 * 108.26602 * 179.97438 * 15 14 13 18 18 N 1.28694 * 111.75851 * 0.02562 * 17 15 14 19 19 C 1.34394 * 109.14922 * 359.97438 * 18 17 15 20 20 C 1.55156 * 103.02194 * 218.66980 * 5 3 2 21 21 C 1.54910 * 101.58094 * 35.30826 * 20 5 3 22 22 N 1.47029 * 109.87840 * 65.71935 * 3 2 1 23 23 C 1.36929 * 125.64715 * 298.39367 * 22 3 2 24 24 H 1.07995 * 120.00262 * 333.70687 * 23 22 3 25 25 C 1.38817 * 119.99616 * 153.71303 * 23 22 3 26 26 N 1.31623 * 119.99847 * 334.82944 * 25 23 22 27 27 Si 1.86801 * 120.00106 * 154.83543 * 25 23 22 28 28 H 1.48500 * 109.46938 * 359.97438 * 27 25 23 29 29 H 1.48501 * 109.47159 * 239.99924 * 27 25 23 30 30 H 1.48497 * 109.47066 * 119.99285 * 27 25 23 31 31 H 1.09003 * 109.46659 * 291.79177 * 1 2 3 32 32 H 1.09001 * 109.47173 * 51.78393 * 1 2 3 33 33 H 1.09000 * 109.47494 * 171.78859 * 1 2 3 34 34 H 1.09002 * 109.46507 * 240.00312 * 2 1 3 35 35 H 1.08995 * 109.47359 * 120.00506 * 2 1 3 36 36 H 0.97003 * 119.99677 * 20.15469 * 7 5 3 37 37 H 1.08001 * 120.31608 * 359.96787 * 11 10 8 38 38 H 1.07997 * 119.18850 * 180.27866 * 12 11 10 39 39 H 1.09000 * 111.00497 * 277.23103 * 20 5 3 40 40 H 1.08995 * 111.00085 * 153.37724 * 20 5 3 41 41 H 1.08998 * 110.36323 * 204.15638 * 21 20 5 42 42 H 1.08998 * 110.37052 * 81.82802 * 21 20 5 43 43 H 0.96994 * 120.00061 * 353.73735 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6156 1.9880 -0.8428 5 6 3.5807 1.4574 -0.0907 6 1 3.9935 0.5134 0.2652 7 7 4.0196 1.7329 -1.4610 8 6 5.2661 1.3984 -1.8493 9 8 6.0259 0.8679 -1.0628 10 6 5.7094 1.6770 -3.2323 11 6 4.8552 2.2795 -4.1552 12 6 5.3101 2.5292 -5.4407 13 7 6.5276 2.2018 -5.8177 14 6 7.3823 1.6235 -4.9914 15 7 8.6770 1.1813 -5.0966 16 1 9.2320 1.2317 -5.8906 17 7 9.0289 0.6891 -3.9599 18 7 8.0793 0.7610 -3.0942 19 6 7.0067 1.3370 -3.6633 20 6 3.9754 2.6210 0.8567 21 6 2.9035 2.4946 1.9679 22 7 1.6707 2.1033 1.2604 23 6 0.3933 2.3150 1.7059 24 1 -0.4192 2.3937 0.9989 25 6 0.1428 2.4287 3.0666 26 7 0.9579 1.8681 3.9349 27 14 -1.3511 3.3769 3.6653 28 1 -2.1014 3.9067 2.4984 29 1 -0.9097 4.5057 4.5233 30 1 -2.2296 2.4726 4.4499 31 1 -0.3633 0.3815 0.9543 32 1 -0.3633 0.6357 -0.8074 33 1 -0.3634 -1.0171 -0.1468 34 1 1.8932 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 3.4132 2.1561 -2.0887 37 1 3.8499 2.5526 -3.8702 38 1 4.6474 3.0001 -6.1517 39 1 3.8993 3.5820 0.3479 40 1 4.9767 2.4730 1.2611 41 1 2.7645 3.4512 2.4714 42 1 3.1896 1.7254 2.6852 43 1 1.6809 1.3006 3.6250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087651619.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:51 Heat of formation + Delta-G solvation = 119.449026 kcal Electronic energy + Delta-G solvation = -28092.658774 eV Core-core repulsion = 24176.019108 eV Total energy + Delta-G solvation = -3916.639665 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.76587 -40.25324 -39.10646 -37.86630 -34.53445 -34.41427 -32.74013 -32.48382 -31.62679 -31.18411 -28.67184 -27.09657 -25.84695 -24.47135 -24.26981 -23.36731 -21.93337 -21.32727 -20.39640 -19.87303 -19.03635 -18.71766 -17.76885 -17.35260 -16.97000 -16.23739 -15.79097 -15.25257 -14.90675 -14.65294 -14.25562 -13.91298 -13.64418 -13.62019 -13.29545 -13.12832 -12.92196 -12.66819 -12.43723 -12.21440 -12.02193 -11.85708 -11.66008 -11.11290 -10.94812 -10.77460 -10.54484 -10.43482 -10.23878 -10.14347 -10.09162 -9.88532 -9.75271 -9.71551 -9.47819 -9.45245 -8.83892 -8.41212 -6.93130 -6.06979 -3.24405 -0.33660 0.44412 1.75116 1.84591 2.60586 2.87606 3.34520 3.39209 3.49038 3.52015 3.64318 3.82943 4.03120 4.14232 4.35007 4.55182 4.72653 4.98103 5.06376 5.13855 5.29206 5.29798 5.33978 5.39531 5.66566 5.73383 5.89718 5.94072 6.01112 6.12713 6.18856 6.24913 6.33295 6.47270 6.54573 6.62536 6.73853 6.92789 7.02107 7.04205 7.07922 7.31104 7.46507 7.80717 7.85161 8.14494 8.47594 8.99749 9.77134 10.35414 11.20824 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.024906 B = 0.002695 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.938236 B =10388.378386 C =10718.560767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.157 3.843 4 H 0.037 0.963 5 C 0.135 3.865 6 H 0.096 0.904 7 N -0.705 5.705 8 C 0.548 3.452 9 O -0.499 6.499 10 C -0.003 4.003 11 C -0.143 4.143 12 C 0.163 3.837 13 N -0.461 5.461 14 C 0.214 3.786 15 N -0.407 5.407 16 H 0.457 0.543 17 N 0.001 4.999 18 N -0.207 5.207 19 C 0.002 3.998 20 C -0.144 4.144 21 C 0.143 3.857 22 N -0.589 5.589 23 C -0.326 4.326 24 H 0.064 0.936 25 C -0.024 4.024 26 N -0.913 5.913 27 Si 1.068 2.932 28 H -0.292 1.292 29 H -0.290 1.290 30 H -0.294 1.294 31 H 0.092 0.908 32 H 0.038 0.962 33 H 0.029 0.971 34 H 0.039 0.961 35 H 0.056 0.944 36 H 0.398 0.602 37 H 0.160 0.840 38 H 0.184 0.816 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.051 0.949 42 H 0.031 0.969 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.708 1.622 -21.322 23.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C 0.050 3.950 4 H 0.055 0.945 5 C 0.031 3.969 6 H 0.114 0.886 7 N -0.357 5.357 8 C 0.332 3.668 9 O -0.373 6.373 10 C -0.019 4.019 11 C -0.166 4.166 12 C -0.009 4.009 13 N -0.175 5.175 14 C -0.030 4.030 15 N -0.137 5.137 16 H 0.306 0.694 17 N 0.018 4.982 18 N -0.083 5.083 19 C -0.127 4.127 20 C -0.184 4.184 21 C 0.018 3.982 22 N -0.316 5.316 23 C -0.454 4.454 24 H 0.082 0.918 25 C -0.227 4.227 26 N -0.553 5.553 27 Si 0.899 3.101 28 H -0.218 1.218 29 H -0.217 1.217 30 H -0.222 1.222 31 H 0.111 0.889 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.233 0.767 37 H 0.178 0.822 38 H 0.201 0.799 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.048 0.952 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.839 1.248 -19.281 21.683 hybrid contribution -0.178 -0.079 -2.111 2.120 sum 9.662 1.169 -21.393 23.502 Atomic orbital electron populations 1.21890 0.95595 0.98876 1.04225 1.21893 0.97115 0.97542 0.99757 1.21190 0.89365 0.92390 0.92053 0.94531 1.22178 0.95766 0.99397 0.79538 0.88632 1.45941 1.13439 1.61856 1.14484 1.17853 0.82684 0.80122 0.86143 1.90886 1.52816 1.40575 1.53008 1.19789 0.90415 0.96446 0.95278 1.22464 1.01188 0.98909 0.94059 1.22861 0.89807 0.93722 0.94539 1.66324 1.03186 1.11993 1.35950 1.19869 0.88602 1.02097 0.92408 1.44715 1.09658 1.45487 1.13810 0.69447 1.78282 1.20959 1.10876 0.88033 1.75616 0.96610 1.15155 1.20879 1.20139 0.95823 1.04018 0.92687 1.23200 0.99583 0.97618 0.97973 1.21556 0.85219 0.98708 0.92768 1.44528 1.01938 1.65321 1.19769 1.19633 0.83742 1.49381 0.92650 0.91838 1.25834 1.03943 1.00517 0.92369 1.70698 1.19013 1.29087 1.36473 0.83479 0.75077 0.76397 0.75192 1.21795 1.21724 1.22154 0.88942 0.94291 0.95209 0.94278 0.92499 0.76692 0.82247 0.79939 0.91545 0.91382 0.93052 0.95165 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 8.98 37.16 0.33 -2.46 16 2 C -0.12 -2.29 5.47 -26.73 -0.15 -2.43 16 3 C 0.16 2.95 3.00 -66.94 -0.20 2.75 16 4 H 0.04 0.66 7.69 -51.93 -0.40 0.26 16 5 C 0.14 2.30 2.76 -66.09 -0.18 2.12 16 6 H 0.10 1.79 7.40 -51.92 -0.38 1.41 16 7 N -0.71 -9.40 5.16 -52.96 -0.27 -9.68 16 8 C 0.55 8.09 7.79 -12.32 -0.10 7.99 16 9 O -0.50 -9.52 16.00 5.33 0.09 -9.43 16 10 C 0.00 -0.03 5.92 -104.51 -0.62 -0.65 16 11 C -0.14 -1.04 9.61 -38.99 -0.37 -1.41 16 12 C 0.16 1.02 11.14 -17.51 -0.20 0.83 16 13 N -0.46 -4.07 10.35 -12.38 -0.13 -4.20 16 14 C 0.21 2.27 8.56 -156.21 -1.34 0.93 16 15 N -0.41 -3.59 7.06 31.11 0.22 -3.37 16 16 H 0.46 2.02 8.96 -190.25 -1.71 0.31 16 17 N 0.00 0.02 13.29 60.35 0.80 0.82 16 18 N -0.21 -3.14 11.92 32.23 0.38 -2.76 16 19 C 0.00 0.03 6.97 -84.72 -0.59 -0.56 16 20 C -0.14 -2.61 6.77 -24.58 -0.17 -2.78 16 21 C 0.14 3.19 5.56 -2.53 -0.01 3.18 16 22 N -0.59 -13.60 2.92 -162.56 -0.47 -14.08 16 23 C -0.33 -8.36 7.22 -15.06 -0.11 -8.47 16 24 H 0.06 1.63 7.24 -52.49 -0.38 1.25 16 25 C -0.02 -0.63 5.18 -17.43 -0.09 -0.72 16 26 N -0.91 -26.51 13.05 55.49 0.72 -25.78 16 27 Si 1.07 24.42 29.99 -169.99 -5.10 19.32 16 28 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 29 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 30 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 31 H 0.09 2.06 5.52 -51.93 -0.29 1.78 16 32 H 0.04 0.68 8.13 -51.93 -0.42 0.25 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.40 3.99 6.46 -40.82 -0.26 3.72 16 37 H 0.16 0.65 6.53 -52.49 -0.34 0.31 16 38 H 0.18 0.37 8.06 -52.49 -0.42 -0.05 16 39 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.03 0.74 6.73 -51.93 -0.35 0.39 16 43 H 0.27 7.94 6.20 -40.82 -0.25 7.68 16 LS Contribution 353.77 15.07 5.33 5.33 Total: -1.00 -34.60 353.77 -8.76 -43.35 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -6.54 Total: 2.16 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -3.79 Total: -1.69 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: 1.25 Total: -59.05 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.09 Total: -9.43 kcal Atomic # 14 Polarization: 24.42 SS G_CDS: -5.10 Total: 19.32 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.60 -8.76 -43.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087651619.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.804 kcal (2) G-P(sol) polarization free energy of solvation -34.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds