Wall clock time and date at job start Tue Mar 31 2020 05:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47153 * 2 1 4 4 H 1.09007 * 109.99917 * 56.18879 * 3 2 1 5 5 C 1.54324 * 109.88449 * 295.09394 * 3 2 1 6 6 H 1.09002 * 110.87596 * 336.82360 * 5 3 2 7 7 N 1.46511 * 110.72047 * 100.02455 * 5 3 2 8 8 C 1.34773 * 119.99733 * 199.97865 * 7 5 3 9 9 O 1.21559 * 120.00630 * 359.97438 * 8 7 5 10 10 C 1.47826 * 119.99753 * 179.97438 * 8 7 5 11 11 C 1.41578 * 120.37273 * 0.02562 * 10 8 7 12 12 C 1.34818 * 120.11589 * 179.97438 * 11 10 8 13 13 N 1.36054 * 120.82517 * 359.95628 * 12 11 10 14 14 N 1.40251 * 133.72745 * 180.02562 * 13 12 11 15 15 N 1.28973 * 107.01810 * 180.02562 * 14 13 12 16 16 N 1.28538 * 110.84668 * 0.02562 * 15 14 13 17 17 C 1.32618 * 110.18461 * 359.97438 * 16 15 14 18 18 C 1.38452 * 120.37503 * 179.97438 * 10 8 7 19 19 C 1.55153 * 102.94329 * 218.38901 * 5 3 2 20 20 C 1.54903 * 101.58351 * 35.49964 * 19 5 3 21 21 N 1.47019 * 109.88684 * 177.28685 * 3 2 1 22 22 C 1.36940 * 125.64449 * 298.39831 * 21 3 2 23 23 H 1.08000 * 120.00403 * 348.06341 * 22 21 3 24 24 C 1.38807 * 119.99948 * 168.06696 * 22 21 3 25 25 N 1.31623 * 120.00132 * 359.97438 * 24 22 21 26 26 Si 1.86808 * 120.00026 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46864 * 89.99834 * 26 24 22 28 28 H 1.48502 * 109.46951 * 209.99829 * 26 24 22 29 29 H 1.48500 * 109.46754 * 329.99847 * 26 24 22 30 30 H 1.08994 * 109.46897 * 185.49012 * 1 2 3 31 31 H 1.09007 * 109.46793 * 305.48585 * 1 2 3 32 32 H 1.08999 * 109.47185 * 65.48604 * 1 2 3 33 33 H 1.09007 * 109.46620 * 240.00614 * 2 1 3 34 34 H 1.08989 * 109.47383 * 119.99947 * 2 1 3 35 35 H 0.96999 * 120.00001 * 19.97793 * 7 5 3 36 36 H 1.08005 * 119.93992 * 359.97438 * 11 10 8 37 37 H 1.08000 * 119.58539 * 179.97438 * 12 11 10 38 38 H 1.08001 * 120.51782 * 0.02562 * 18 10 8 39 39 H 1.08998 * 111.00518 * 153.58112 * 19 5 3 40 40 H 1.09003 * 111.00591 * 277.42102 * 19 5 3 41 41 H 1.09007 * 110.36614 * 81.82942 * 20 19 5 42 42 H 1.08998 * 110.37144 * 204.15263 * 20 19 5 43 43 H 0.97003 * 120.00169 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6269 1.9840 0.8511 5 6 1.6347 2.1425 -1.3143 6 1 1.4541 1.4126 -2.1034 7 7 0.4536 2.9850 -1.1099 8 6 -0.2988 3.3575 -2.1642 9 8 0.0026 2.9950 -3.2846 10 6 -1.4908 4.2071 -1.9579 11 6 -1.8489 4.6344 -0.6565 12 6 -2.9368 5.4096 -0.4745 13 7 -3.7042 5.7932 -1.5305 14 7 -4.8619 6.5751 -1.6542 15 7 -5.1626 6.6086 -2.9080 16 7 -4.3181 5.9294 -3.5992 17 6 -3.3953 5.4029 -2.8054 18 6 -2.2691 4.5949 -3.0354 19 6 2.8779 3.0105 -1.6434 20 6 4.0313 2.1010 -1.1515 21 7 3.5087 1.4536 0.0654 22 6 4.2659 0.9460 1.0873 23 1 3.7972 0.6655 2.0190 24 6 5.6359 0.7919 0.9257 25 7 6.2071 1.1332 -0.2099 26 14 6.6689 0.1000 2.3199 27 1 6.7389 -1.3783 2.1976 28 1 8.0392 0.6680 2.2497 29 1 6.0497 0.4604 3.6207 30 1 -0.3633 -1.0229 0.0983 31 1 -0.3633 0.5966 0.8369 32 1 -0.3633 0.4264 -0.9350 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 0.2133 3.2747 -0.2159 36 1 -1.2495 4.3389 0.1919 37 1 -3.2023 5.7303 0.5220 38 1 -2.0145 4.2810 -4.0369 39 1 2.9542 3.1932 -2.7152 40 1 2.8570 3.9490 -1.0894 41 1 4.2720 1.3520 -1.9061 42 1 4.9115 2.6988 -0.9151 43 1 7.1645 1.0252 -0.3230 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087684070.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:48 Heat of formation + Delta-G solvation = 141.931984 kcal Electronic energy + Delta-G solvation = -27859.478960 eV Core-core repulsion = 23943.814229 eV Total energy + Delta-G solvation = -3915.664731 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.80263 -40.49174 -38.83699 -37.77974 -34.45795 -34.37823 -33.02687 -32.56645 -31.71306 -30.96315 -29.16814 -27.06434 -25.68686 -25.20580 -24.31070 -23.27450 -22.44923 -21.25896 -20.39328 -20.02211 -18.96423 -18.33859 -17.35735 -17.29419 -16.89568 -16.15455 -15.55924 -15.31436 -15.05843 -14.80271 -14.27093 -14.12313 -13.91855 -13.78069 -13.46508 -13.38440 -12.91755 -12.82444 -12.44992 -12.24554 -12.07770 -11.93717 -11.78532 -11.47882 -11.29339 -10.99398 -10.94736 -10.75652 -10.65522 -10.61107 -10.52577 -10.18291 -10.11379 -9.85465 -9.74934 -9.15875 -8.91011 -8.69636 -6.94303 -5.83893 -3.21155 -0.39357 -0.08103 1.22475 1.64102 2.14367 2.65443 3.02431 3.27923 3.32313 3.37645 3.39617 3.59961 3.82529 4.08624 4.35435 4.39338 4.45944 4.79202 4.94995 5.06706 5.14987 5.21843 5.24476 5.34561 5.42493 5.44172 5.58978 5.64907 5.69361 5.79455 5.90382 6.04008 6.07475 6.25576 6.31633 6.39227 6.53482 6.54789 6.79153 6.96301 7.31143 7.41978 7.49774 7.69850 7.91571 7.94128 8.16541 9.07946 9.68962 10.34434 11.26930 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.026865 B = 0.002485 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.014711 B =11263.359374 C =11424.372163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.162 3.838 4 H 0.036 0.964 5 C 0.136 3.864 6 H 0.097 0.903 7 N -0.700 5.700 8 C 0.556 3.444 9 O -0.519 6.519 10 C -0.064 4.064 11 C -0.113 4.113 12 C 0.108 3.892 13 N -0.295 5.295 14 N -0.109 5.109 15 N -0.008 5.008 16 N -0.313 5.313 17 C 0.238 3.762 18 C -0.026 4.026 19 C -0.156 4.156 20 C 0.171 3.829 21 N -0.594 5.594 22 C -0.230 4.230 23 H 0.076 0.924 24 C -0.003 4.003 25 N -0.917 5.917 26 Si 0.911 3.089 27 H -0.288 1.288 28 H -0.290 1.290 29 H -0.281 1.281 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.398 0.602 36 H 0.173 0.827 37 H 0.189 0.811 38 H 0.182 0.818 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.027 0.973 42 H 0.081 0.919 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.849 6.284 0.695 17.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.173 4.173 3 C 0.054 3.946 4 H 0.053 0.947 5 C 0.033 3.967 6 H 0.115 0.885 7 N -0.350 5.350 8 C 0.341 3.659 9 O -0.395 6.395 10 C -0.076 4.076 11 C -0.137 4.137 12 C -0.019 4.019 13 N -0.076 5.076 14 N -0.092 5.092 15 N -0.001 5.001 16 N -0.174 5.174 17 C -0.016 4.016 18 C -0.050 4.050 19 C -0.196 4.196 20 C 0.046 3.954 21 N -0.318 5.318 22 C -0.358 4.358 23 H 0.094 0.906 24 C -0.200 4.200 25 N -0.563 5.563 26 Si 0.741 3.259 27 H -0.215 1.215 28 H -0.216 1.216 29 H -0.206 1.206 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.234 0.766 36 H 0.191 0.809 37 H 0.206 0.794 38 H 0.199 0.801 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.045 0.955 42 H 0.099 0.901 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -16.719 6.867 -0.416 18.079 hybrid contribution 1.173 -0.726 1.632 2.137 sum -15.546 6.141 1.216 16.759 Atomic orbital electron populations 1.21785 0.97264 1.00727 1.00775 1.22039 0.93553 0.99114 1.02622 1.21051 0.87285 0.93376 0.92886 0.94691 1.22262 0.82967 0.92325 0.99189 0.88473 1.46006 1.28085 1.51719 1.09200 1.17704 0.82180 0.80574 0.85467 1.90854 1.70754 1.54854 1.23039 1.20476 0.96350 0.97824 0.92952 1.21266 0.96445 0.97832 0.98165 1.21585 0.90805 0.97417 0.92111 1.49048 1.19060 1.31249 1.08221 1.82822 0.97555 1.15449 1.13418 1.77896 1.16180 1.09402 0.96635 1.75270 1.02990 1.14403 1.24720 1.22778 0.98054 0.98771 0.81961 1.20812 0.88625 0.93188 1.02326 1.23446 0.96454 0.99067 1.00634 1.21510 0.93381 0.93007 0.87487 1.44454 0.98183 1.68378 1.20824 1.18933 0.89092 1.35840 0.91907 0.90589 1.24876 0.97031 1.00954 0.97151 1.69913 1.10224 1.52359 1.23799 0.86148 0.79780 0.78833 0.81133 1.21489 1.21647 1.20646 0.93549 0.93454 0.93355 0.92214 0.91597 0.76641 0.80937 0.79434 0.80085 0.91624 0.91900 0.95531 0.90094 0.93532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.57 37.16 0.36 -1.46 16 2 C -0.13 -2.16 5.41 -26.73 -0.14 -2.31 16 3 C 0.16 2.77 2.94 -66.96 -0.20 2.57 16 4 H 0.04 0.57 7.69 -51.93 -0.40 0.17 16 5 C 0.14 2.05 1.92 -66.09 -0.13 1.92 16 6 H 0.10 1.61 7.34 -51.93 -0.38 1.22 16 7 N -0.70 -7.50 4.89 -52.97 -0.26 -7.76 16 8 C 0.56 6.18 7.78 -12.34 -0.10 6.08 16 9 O -0.52 -7.76 16.09 5.31 0.09 -7.67 16 10 C -0.06 -0.52 5.90 -104.62 -0.62 -1.14 16 11 C -0.11 -0.55 9.48 -39.52 -0.37 -0.93 16 12 C 0.11 0.58 11.19 -16.89 -0.19 0.39 16 13 N -0.30 -2.80 3.94 -12.43 -0.05 -2.84 16 14 N -0.11 -1.29 13.98 60.35 0.84 -0.45 16 15 N -0.01 -0.11 13.35 60.35 0.81 0.70 16 16 N -0.31 -4.05 12.27 31.03 0.38 -3.67 16 17 C 0.24 2.54 8.02 -156.36 -1.25 1.28 16 18 C -0.03 -0.23 9.70 -38.65 -0.37 -0.61 16 19 C -0.16 -2.67 6.77 -24.59 -0.17 -2.84 16 20 C 0.17 3.79 5.46 -2.54 -0.01 3.78 16 21 N -0.59 -13.35 3.13 -162.58 -0.51 -13.86 16 22 C -0.23 -5.79 9.77 -15.06 -0.15 -5.94 16 23 H 0.08 1.85 7.83 -52.49 -0.41 1.44 16 24 C 0.00 -0.08 5.47 -17.43 -0.10 -0.18 16 25 N -0.92 -25.31 10.47 55.49 0.58 -24.73 16 26 Si 0.91 20.79 29.55 -169.99 -5.02 15.76 16 27 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 28 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 29 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 32 H 0.05 0.58 7.38 -51.93 -0.38 0.20 16 33 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 34 H 0.07 1.17 7.91 -51.94 -0.41 0.76 16 35 H 0.40 3.05 6.38 -40.82 -0.26 2.78 16 36 H 0.17 0.30 6.46 -52.48 -0.34 -0.04 16 37 H 0.19 0.34 8.06 -52.49 -0.42 -0.09 16 38 H 0.18 1.58 7.67 -52.49 -0.40 1.18 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.03 0.65 8.11 -51.93 -0.42 0.23 16 42 H 0.08 2.03 6.73 -51.93 -0.35 1.68 16 43 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 358.90 15.07 5.41 5.41 Total: -1.00 -32.07 358.90 -6.60 -38.67 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -5.43 Total: -0.20 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -3.44 Total: 0.63 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: 1.80 Total: -52.61 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: 0.09 Total: -7.67 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.07 -6.60 -38.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087684070.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.603 kcal (2) G-P(sol) polarization free energy of solvation -32.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds