Wall clock time and date at job start Tue Mar 31 2020 05:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47153 * 2 1 4 4 H 1.09007 * 109.99917 * 56.18879 * 3 2 1 5 5 C 1.54324 * 109.88449 * 295.09394 * 3 2 1 6 6 H 1.09002 * 110.87596 * 336.82360 * 5 3 2 7 7 N 1.46511 * 110.72047 * 100.02455 * 5 3 2 8 8 C 1.34773 * 119.99733 * 199.97865 * 7 5 3 9 9 O 1.21559 * 120.00630 * 359.97438 * 8 7 5 10 10 C 1.47826 * 119.99753 * 179.97438 * 8 7 5 11 11 C 1.41578 * 120.37273 * 0.02562 * 10 8 7 12 12 C 1.34818 * 120.11589 * 179.97438 * 11 10 8 13 13 N 1.36054 * 120.82517 * 359.95628 * 12 11 10 14 14 N 1.40251 * 133.72745 * 180.02562 * 13 12 11 15 15 N 1.28973 * 107.01810 * 180.02562 * 14 13 12 16 16 N 1.28538 * 110.84668 * 0.02562 * 15 14 13 17 17 C 1.32618 * 110.18461 * 359.97438 * 16 15 14 18 18 C 1.38452 * 120.37503 * 179.97438 * 10 8 7 19 19 C 1.55153 * 102.94329 * 218.38901 * 5 3 2 20 20 C 1.54903 * 101.58351 * 35.49964 * 19 5 3 21 21 N 1.47019 * 109.88684 * 177.28685 * 3 2 1 22 22 C 1.36940 * 125.64449 * 298.39831 * 21 3 2 23 23 H 1.08000 * 120.00403 * 348.06341 * 22 21 3 24 24 C 1.38807 * 119.99948 * 168.06696 * 22 21 3 25 25 N 1.31623 * 120.00132 * 359.97438 * 24 22 21 26 26 Si 1.86808 * 120.00026 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46864 * 89.99834 * 26 24 22 28 28 H 1.48502 * 109.46951 * 209.99829 * 26 24 22 29 29 H 1.48500 * 109.46754 * 329.99847 * 26 24 22 30 30 H 1.08994 * 109.46897 * 185.49012 * 1 2 3 31 31 H 1.09007 * 109.46793 * 305.48585 * 1 2 3 32 32 H 1.08999 * 109.47185 * 65.48604 * 1 2 3 33 33 H 1.09007 * 109.46620 * 240.00614 * 2 1 3 34 34 H 1.08989 * 109.47383 * 119.99947 * 2 1 3 35 35 H 0.96999 * 120.00001 * 19.97793 * 7 5 3 36 36 H 1.08005 * 119.93992 * 359.97438 * 11 10 8 37 37 H 1.08000 * 119.58539 * 179.97438 * 12 11 10 38 38 H 1.08001 * 120.51782 * 0.02562 * 18 10 8 39 39 H 1.08998 * 111.00518 * 153.58112 * 19 5 3 40 40 H 1.09003 * 111.00591 * 277.42102 * 19 5 3 41 41 H 1.09007 * 110.36614 * 81.82942 * 20 19 5 42 42 H 1.08998 * 110.37144 * 204.15263 * 20 19 5 43 43 H 0.97003 * 120.00169 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6269 1.9840 0.8511 5 6 1.6347 2.1425 -1.3143 6 1 1.4541 1.4126 -2.1034 7 7 0.4536 2.9850 -1.1099 8 6 -0.2988 3.3575 -2.1642 9 8 0.0026 2.9950 -3.2846 10 6 -1.4908 4.2071 -1.9579 11 6 -1.8489 4.6344 -0.6565 12 6 -2.9368 5.4096 -0.4745 13 7 -3.7042 5.7932 -1.5305 14 7 -4.8619 6.5751 -1.6542 15 7 -5.1626 6.6086 -2.9080 16 7 -4.3181 5.9294 -3.5992 17 6 -3.3953 5.4029 -2.8054 18 6 -2.2691 4.5949 -3.0354 19 6 2.8779 3.0105 -1.6434 20 6 4.0313 2.1010 -1.1515 21 7 3.5087 1.4536 0.0654 22 6 4.2659 0.9460 1.0873 23 1 3.7972 0.6655 2.0190 24 6 5.6359 0.7919 0.9257 25 7 6.2071 1.1332 -0.2099 26 14 6.6689 0.1000 2.3199 27 1 6.7389 -1.3783 2.1976 28 1 8.0392 0.6680 2.2497 29 1 6.0497 0.4604 3.6207 30 1 -0.3633 -1.0229 0.0983 31 1 -0.3633 0.5966 0.8369 32 1 -0.3633 0.4264 -0.9350 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 0.2133 3.2747 -0.2159 36 1 -1.2495 4.3389 0.1919 37 1 -3.2023 5.7303 0.5220 38 1 -2.0145 4.2810 -4.0369 39 1 2.9542 3.1932 -2.7152 40 1 2.8570 3.9490 -1.0894 41 1 4.2720 1.3520 -1.9061 42 1 4.9115 2.6988 -0.9151 43 1 7.1645 1.0252 -0.3230 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087684070.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:47 Heat of formation + Delta-G solvation = 120.152837 kcal Electronic energy + Delta-G solvation = -27860.423375 eV Core-core repulsion = 23943.814229 eV Total energy + Delta-G solvation = -3916.609146 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.56140 -41.45798 -39.83700 -38.95030 -35.75362 -35.16747 -34.36593 -33.61930 -33.06333 -31.64660 -30.79887 -28.31153 -26.88318 -25.91099 -25.81365 -23.97359 -23.65490 -22.44282 -21.79486 -21.33813 -19.79125 -19.18402 -18.69635 -18.06691 -18.04286 -17.25435 -16.67334 -16.26621 -16.16341 -15.98523 -15.68104 -15.36596 -15.17792 -14.65359 -14.43287 -14.28345 -14.20632 -13.77014 -13.68308 -13.48775 -13.19287 -13.08987 -12.84518 -12.75240 -12.70359 -12.53297 -12.27973 -12.16478 -12.00967 -11.92652 -11.88120 -11.51466 -11.34885 -11.31527 -11.19452 -10.64954 -10.08623 -9.78025 -8.80129 -7.80714 -5.17959 -1.07919 -0.72765 0.59643 0.90756 1.35867 1.50190 1.51362 1.59275 1.73245 2.24962 2.51597 2.58394 2.88755 3.23035 3.39117 3.45536 3.62493 3.74897 3.85617 3.94530 3.96789 4.07729 4.24825 4.34059 4.43702 4.47831 4.52879 4.65789 4.69679 4.72472 4.80608 4.85406 4.89945 5.09601 5.17037 5.23625 5.29172 5.33660 5.51592 5.55404 5.62842 5.69588 5.79502 6.28222 6.42993 7.07068 7.10392 7.13568 7.82224 8.47037 9.29342 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.026865 B = 0.002485 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.014711 B =11263.359374 C =11424.372163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.159 3.841 4 H 0.064 0.936 5 C 0.157 3.843 6 H 0.082 0.918 7 N -0.684 5.684 8 C 0.563 3.437 9 O -0.558 6.558 10 C -0.051 4.051 11 C -0.093 4.093 12 C 0.114 3.886 13 N -0.293 5.293 14 N -0.122 5.122 15 N -0.032 5.032 16 N -0.344 5.344 17 C 0.228 3.772 18 C -0.034 4.034 19 C -0.141 4.141 20 C 0.177 3.823 21 N -0.613 5.613 22 C -0.225 4.225 23 H 0.086 0.914 24 C -0.065 4.065 25 N -0.951 5.951 26 Si 0.970 3.030 27 H -0.292 1.292 28 H -0.300 1.300 29 H -0.264 1.264 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.032 0.968 34 H 0.048 0.952 35 H 0.419 0.581 36 H 0.217 0.783 37 H 0.232 0.768 38 H 0.176 0.824 39 H 0.066 0.934 40 H 0.079 0.921 41 H -0.011 1.011 42 H 0.045 0.955 43 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.784 6.764 3.638 19.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.169 4.169 3 C 0.053 3.947 4 H 0.082 0.918 5 C 0.051 3.949 6 H 0.100 0.900 7 N -0.336 5.336 8 C 0.349 3.651 9 O -0.437 6.437 10 C -0.063 4.063 11 C -0.116 4.116 12 C -0.012 4.012 13 N -0.073 5.073 14 N -0.105 5.105 15 N -0.025 5.025 16 N -0.206 5.206 17 C -0.025 4.025 18 C -0.058 4.058 19 C -0.181 4.181 20 C 0.051 3.949 21 N -0.338 5.338 22 C -0.354 4.354 23 H 0.104 0.896 24 C -0.258 4.258 25 N -0.600 5.600 26 Si 0.800 3.200 27 H -0.219 1.219 28 H -0.227 1.227 29 H -0.189 1.189 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.258 0.742 36 H 0.234 0.766 37 H 0.249 0.751 38 H 0.194 0.806 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.007 0.993 42 H 0.063 0.937 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -18.723 7.361 2.572 20.282 hybrid contribution 1.813 -0.931 0.769 2.178 sum -16.910 6.430 3.341 18.397 Atomic orbital electron populations 1.21685 0.93550 1.02007 1.02161 1.21937 0.96721 0.97738 1.00492 1.21281 0.84204 0.94504 0.94744 0.91814 1.21729 0.83666 0.91853 0.97619 0.89979 1.45644 1.26557 1.51000 1.10403 1.17973 0.82445 0.80011 0.84628 1.90861 1.71804 1.56231 1.24790 1.20217 0.94692 0.97113 0.94311 1.21700 0.96104 0.96197 0.97598 1.22494 0.89747 0.96194 0.92759 1.49213 1.18670 1.30565 1.08822 1.82695 0.98631 1.16302 1.12904 1.77854 1.17014 1.10314 0.97284 1.75148 1.03994 1.15477 1.26016 1.22747 0.98116 0.99211 0.82394 1.20751 0.88672 0.93639 1.02775 1.23240 0.95341 0.98816 1.00708 1.21203 0.94323 0.92447 0.86914 1.44691 1.00712 1.68312 1.20077 1.19316 0.89407 1.33846 0.92821 0.89592 1.25630 0.98513 1.02465 0.99227 1.70134 1.09654 1.54474 1.25736 0.85195 0.77826 0.77598 0.79428 1.21913 1.22732 1.18887 0.92790 0.90662 0.92913 0.94886 0.93335 0.74158 0.76615 0.75117 0.80632 0.91511 0.90270 0.99307 0.93680 0.94578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.57 71.98 0.69 -2.12 16 2 C -0.13 -3.95 5.41 30.59 0.17 -3.78 16 3 C 0.16 5.06 2.94 45.34 0.13 5.19 16 4 H 0.06 1.72 7.69 -2.38 -0.02 1.71 16 5 C 0.16 4.36 1.92 46.18 0.09 4.45 16 6 H 0.08 2.62 7.34 -2.39 -0.02 2.60 16 7 N -0.68 -11.73 4.89 -439.78 -2.15 -13.88 16 8 C 0.56 10.66 7.78 86.78 0.67 11.33 16 9 O -0.56 -15.82 16.09 -3.90 -0.06 -15.88 16 10 C -0.05 -0.64 5.90 -19.87 -0.12 -0.76 16 11 C -0.09 -0.36 9.48 22.31 0.21 -0.15 16 12 C 0.11 0.63 11.19 83.25 0.93 1.56 16 13 N -0.29 -4.75 3.94 -193.23 -0.76 -5.51 16 14 N -0.12 -2.71 13.98 37.02 0.52 -2.19 16 15 N -0.03 -0.85 13.35 37.02 0.49 -0.35 16 16 N -0.34 -8.95 12.27 -55.73 -0.68 -9.63 16 17 C 0.23 4.56 8.02 134.05 1.07 5.63 16 18 C -0.03 -0.56 9.70 22.87 0.22 -0.34 16 19 C -0.14 -4.70 6.77 31.98 0.22 -4.48 16 20 C 0.18 8.06 5.46 86.85 0.47 8.53 16 21 N -0.61 -27.41 3.13 -668.29 -2.09 -29.50 16 22 C -0.22 -11.26 9.77 84.03 0.82 -10.44 16 23 H 0.09 4.05 7.83 -2.91 -0.02 4.03 16 24 C -0.07 -3.48 5.47 84.86 0.46 -3.01 16 25 N -0.95 -54.67 10.47 21.65 0.23 -54.45 16 26 Si 0.97 43.14 29.55 68.60 2.03 45.17 16 27 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 28 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 29 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 30 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.05 1.06 7.38 -2.39 -0.02 1.04 16 33 H 0.03 1.16 8.08 -2.38 -0.02 1.14 16 34 H 0.05 1.64 7.91 -2.39 -0.02 1.62 16 35 H 0.42 3.74 6.38 -92.71 -0.59 3.15 16 36 H 0.22 -1.01 6.46 -2.91 -0.02 -1.03 16 37 H 0.23 -0.74 8.06 -2.91 -0.02 -0.77 16 38 H 0.18 3.02 7.67 -2.91 -0.02 3.00 16 39 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 41 H -0.01 -0.58 8.11 -2.38 -0.02 -0.60 16 42 H 0.04 2.36 6.73 -2.39 -0.02 2.34 16 43 H 0.24 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -76.06 358.90 4.03 -72.03 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: 0.47 Total: 2.59 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: 6.05 Total: 11.60 kcal Atomic # 7 Polarization: -111.06 SS G_CDS: -4.45 Total: -115.51 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.06 Total: -15.88 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -76.06 4.03 -72.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087684070.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.182 kcal (2) G-P(sol) polarization free energy of solvation -76.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds