Wall clock time and date at job start Tue Mar 31 2020 05:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 110.00210 * 2 1 4 4 C 1.54332 * 109.88120 * 238.90563 * 2 1 3 5 5 H 1.09001 * 110.71523 * 336.92979 * 4 2 1 6 6 N 1.46497 * 110.71836 * 100.02737 * 4 2 1 7 7 C 1.34777 * 119.99978 * 205.00044 * 6 4 2 8 8 O 1.21574 * 119.99773 * 0.02562 * 7 6 4 9 9 C 1.47713 * 120.00496 * 179.97438 * 7 6 4 10 10 C 1.40123 * 120.34835 * 0.02562 * 9 7 6 11 11 N 1.31265 * 121.14723 * 180.02562 * 10 9 7 12 12 C 1.32711 * 121.80454 * 0.02562 * 11 10 9 13 13 C 1.40786 * 120.68121 * 359.97438 * 12 11 10 14 14 C 1.39429 * 120.35679 * 180.02562 * 9 7 6 15 15 N 1.35327 * 107.76246 * 180.02562 * 13 12 11 16 16 N 1.28669 * 109.99593 * 359.71281 * 15 13 12 17 17 N 1.37120 * 133.40793 * 179.97438 * 12 11 10 18 18 C 1.46499 * 126.59063 * 359.97438 * 17 12 11 19 19 C 1.55156 * 102.94129 * 218.38999 * 4 2 1 20 20 C 1.54907 * 101.58398 * 35.50061 * 19 4 2 21 21 N 1.47020 * 109.88447 * 121.09920 * 2 1 3 22 22 C 1.36940 * 125.64873 * 298.32227 * 21 2 1 23 23 H 1.07996 * 119.99756 * 359.97438 * 22 21 2 24 24 C 1.38808 * 120.00217 * 180.02562 * 22 21 2 25 25 N 1.31624 * 119.99980 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00401 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47065 * 59.99261 * 26 24 22 28 28 H 1.48495 * 109.47587 * 179.97438 * 26 24 22 29 29 H 1.48508 * 109.46982 * 299.99939 * 26 24 22 30 30 H 1.09006 * 109.47383 * 181.09529 * 1 2 3 31 31 H 1.09006 * 109.46873 * 301.09338 * 1 2 3 32 32 H 1.09000 * 109.47368 * 61.09375 * 1 2 3 33 33 H 0.96994 * 120.00480 * 25.00249 * 6 4 2 34 34 H 1.07992 * 119.42313 * 0.04517 * 10 9 7 35 35 H 1.07999 * 120.95274 * 0.02562 * 14 9 7 36 36 H 1.09002 * 109.47391 * 89.99676 * 18 17 12 37 37 H 1.09001 * 109.46813 * 329.99732 * 18 17 12 38 38 H 1.09004 * 109.47041 * 209.99859 * 18 17 12 39 39 H 1.08999 * 111.00339 * 153.57837 * 19 4 2 40 40 H 1.09004 * 111.00419 * 277.42678 * 19 4 2 41 41 H 1.08997 * 110.37092 * 204.15091 * 20 19 4 42 42 H 1.09004 * 110.36478 * 81.82655 * 20 19 4 43 43 H 0.96996 * 120.00304 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7495 -1.2428 5 1 1.3038 -1.4437 -1.6201 6 7 2.4554 0.1961 -2.2875 7 6 2.4581 -0.1883 -3.5793 8 8 2.1276 -1.3195 -3.8776 9 6 2.8615 0.7653 -4.6329 10 6 3.2432 2.0711 -4.2974 11 7 3.6040 2.9314 -5.2209 12 6 3.6241 2.6086 -6.5080 13 6 3.2552 1.3173 -6.9306 14 6 2.8664 0.3757 -5.9716 15 7 3.3706 1.2753 -8.2783 16 7 3.7681 2.4159 -8.7216 17 7 3.9508 3.2980 -7.6474 18 6 4.3989 4.6905 -7.7273 19 6 3.2875 -1.5143 -0.6925 20 6 2.8145 -1.8795 0.7367 21 7 2.0300 -0.7141 1.1838 22 6 1.8050 -0.3557 2.4862 23 1 1.2149 0.5204 2.7109 24 6 2.3362 -1.1180 3.5175 25 7 3.0558 -2.1855 3.2437 26 14 2.0299 -0.6288 5.2941 27 1 0.5694 -0.6294 5.5629 28 1 2.6994 -1.5989 6.1972 29 1 2.5768 0.7309 5.5344 30 1 -0.3634 -1.0275 0.0196 31 1 -0.3633 0.5308 0.8801 32 1 -0.3634 0.4967 -0.8996 33 1 2.7188 1.0988 -2.0496 34 1 3.2408 2.3749 -3.2611 35 1 2.5768 -0.6239 -6.2603 36 1 5.4858 4.7272 -7.6541 37 1 3.9601 5.2609 -6.9086 38 1 4.0841 5.1194 -8.6787 39 1 3.4851 -2.4110 -1.2798 40 1 4.1654 -0.8689 -0.6605 41 1 3.6716 -2.0339 1.3921 42 1 2.1886 -2.7715 0.7127 43 1 3.4267 -2.7184 3.9643 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088751641.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:59 Heat of formation + Delta-G solvation = 128.188921 kcal Electronic energy + Delta-G solvation = -27413.945916 eV Core-core repulsion = 23497.685241 eV Total energy + Delta-G solvation = -3916.260675 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.73612 -40.21488 -38.66018 -37.51937 -35.29111 -34.23740 -32.60100 -32.18905 -31.01480 -30.39020 -28.68242 -28.11177 -25.73403 -24.83355 -24.08964 -23.88837 -21.87237 -21.19023 -20.31862 -19.91182 -18.75015 -18.24769 -17.22810 -16.87697 -16.76764 -16.41357 -15.73999 -14.94911 -14.76393 -14.43815 -14.16500 -14.07428 -13.95466 -13.60472 -13.54769 -13.38211 -13.29825 -12.88216 -12.82777 -12.18098 -12.09322 -12.04027 -11.61082 -11.37635 -11.18731 -10.89476 -10.87654 -10.64343 -10.56486 -10.28385 -10.15331 -9.81339 -9.76551 -9.68736 -9.60206 -9.33336 -8.76763 -8.67114 -6.91695 -5.68866 -3.12062 -0.19041 0.25748 1.34743 1.66916 2.58076 2.95247 3.35554 3.37781 3.38564 3.42578 3.43732 3.70824 3.88277 4.13170 4.23359 4.44146 4.53133 4.61383 4.81640 4.91931 4.95566 5.21881 5.32818 5.37886 5.44540 5.48815 5.56891 5.68246 5.76683 5.92430 6.06977 6.16944 6.24746 6.29039 6.46180 6.53878 6.66222 6.81276 7.03516 7.04467 7.38683 7.46129 7.54120 7.58537 7.81627 8.16364 8.31684 9.16929 9.77860 10.41069 11.34338 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.027096 B = 0.002313 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.128682 B =12102.520808 C =12549.402788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.155 3.845 3 H 0.037 0.963 4 C 0.134 3.866 5 H 0.098 0.902 6 N -0.707 5.707 7 C 0.567 3.433 8 O -0.531 6.531 9 C -0.203 4.203 10 C 0.213 3.787 11 N -0.486 5.486 12 C 0.286 3.714 13 C -0.074 4.074 14 C 0.083 3.917 15 N -0.196 5.196 16 N 0.009 4.991 17 N -0.386 5.386 18 C 0.101 3.899 19 C -0.153 4.153 20 C 0.152 3.848 21 N -0.595 5.595 22 C -0.222 4.222 23 H 0.077 0.923 24 C -0.009 4.009 25 N -0.921 5.921 26 Si 0.914 3.086 27 H -0.286 1.286 28 H -0.290 1.290 29 H -0.285 1.285 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.038 0.962 33 H 0.397 0.603 34 H 0.180 0.820 35 H 0.167 0.833 36 H 0.085 0.915 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.110 0.890 42 H 0.015 0.985 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.149 12.402 -19.246 22.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.047 3.953 3 H 0.054 0.946 4 C 0.030 3.970 5 H 0.116 0.884 6 N -0.357 5.357 7 C 0.353 3.647 8 O -0.408 6.408 9 C -0.212 4.212 10 C 0.039 3.961 11 N -0.200 5.200 12 C 0.043 3.957 13 C -0.200 4.200 14 C 0.052 3.948 15 N -0.076 5.076 16 N 0.028 4.972 17 N -0.182 5.182 18 C -0.040 4.040 19 C -0.193 4.193 20 C 0.027 3.973 21 N -0.320 5.320 22 C -0.350 4.350 23 H 0.095 0.905 24 C -0.205 4.205 25 N -0.569 5.569 26 Si 0.745 3.255 27 H -0.212 1.212 28 H -0.216 1.216 29 H -0.212 1.212 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.232 0.768 34 H 0.197 0.803 35 H 0.184 0.816 36 H 0.103 0.897 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.127 0.873 42 H 0.033 0.967 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.359 12.312 -20.625 24.136 hybrid contribution -0.292 0.255 1.796 1.838 sum 2.067 12.567 -18.829 22.731 Atomic orbital electron populations 1.22250 0.97803 1.01537 0.99964 1.20999 0.92667 0.94789 0.86870 0.94590 1.22258 0.97916 0.90687 0.86122 0.88420 1.45968 1.67612 1.16364 1.05766 1.17643 0.78150 0.86726 0.82231 1.90814 1.48081 1.19791 1.82164 1.20846 1.09104 0.96649 0.94567 1.23116 0.87351 0.87343 0.98322 1.66647 1.19215 1.36654 0.97506 1.19555 0.97119 0.90222 0.88809 1.20382 1.12085 0.95660 0.91873 1.21090 0.86079 0.98782 0.88883 1.74882 1.10860 1.13465 1.08383 1.81772 1.13803 0.93547 1.08065 1.50002 1.52460 1.13053 1.02655 1.22107 1.01439 0.74951 1.05496 1.23416 0.96646 0.99405 0.99838 1.21965 0.97433 0.88421 0.89474 1.44477 1.59257 1.28235 1.00032 1.18964 1.27330 1.08210 0.80484 0.90490 1.24787 1.00309 0.97357 0.98058 1.69776 1.38989 1.17778 1.30348 0.86164 0.77659 0.77423 0.84285 1.21224 1.21599 1.21176 0.92858 0.92679 0.94291 0.76776 0.80329 0.81597 0.89665 0.88274 0.88303 0.91849 0.91847 0.87265 0.96681 0.93602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 9.13 37.16 0.34 -2.38 16 2 C 0.15 2.87 3.48 -66.95 -0.23 2.64 16 3 H 0.04 0.64 7.72 -51.93 -0.40 0.24 16 4 C 0.13 2.22 2.85 -66.09 -0.19 2.04 16 5 H 0.10 1.75 7.25 -51.93 -0.38 1.38 16 6 N -0.71 -8.96 5.13 -53.01 -0.27 -9.23 16 7 C 0.57 7.47 7.77 -12.39 -0.10 7.37 16 8 O -0.53 -8.91 16.04 5.30 0.09 -8.83 16 9 C -0.20 -2.14 5.88 -104.88 -0.62 -2.76 16 10 C 0.21 1.88 10.69 -17.09 -0.18 1.70 16 11 N -0.49 -4.89 10.37 -12.03 -0.12 -5.02 16 12 C 0.29 3.13 8.05 -155.93 -1.26 1.87 16 13 C -0.07 -0.87 7.27 -84.74 -0.62 -1.48 16 14 C 0.08 0.90 9.75 -38.51 -0.38 0.53 16 15 N -0.20 -2.42 12.40 32.17 0.40 -2.02 16 16 N 0.01 0.11 13.71 60.35 0.83 0.93 16 17 N -0.39 -3.66 4.10 -67.18 -0.28 -3.94 16 18 C 0.10 0.48 11.54 59.85 0.69 1.17 16 19 C -0.15 -2.82 6.77 -24.58 -0.17 -2.99 16 20 C 0.15 3.53 5.89 -2.53 -0.01 3.52 16 21 N -0.59 -14.08 3.13 -162.58 -0.51 -14.59 16 22 C -0.22 -5.80 9.89 -15.06 -0.15 -5.95 16 23 H 0.08 1.94 7.83 -52.49 -0.41 1.53 16 24 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 25 N -0.92 -25.93 10.09 55.49 0.56 -25.37 16 26 Si 0.91 21.34 29.55 -169.99 -5.02 16.31 16 27 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 29 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.05 1.00 8.05 -51.93 -0.42 0.58 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.40 3.86 6.40 -40.82 -0.26 3.60 16 34 H 0.18 1.03 6.39 -52.49 -0.34 0.70 16 35 H 0.17 1.72 7.71 -52.49 -0.40 1.31 16 36 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.11 2.87 5.87 -51.93 -0.30 2.56 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 360.96 15.07 5.44 5.44 Total: -1.00 -32.64 360.96 -7.28 -39.92 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -5.43 Total: 1.47 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: -2.96 Total: 4.92 kcal Atomic # 7 Polarization: -59.84 SS G_CDS: 0.61 Total: -59.24 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.09 Total: -8.83 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.64 -7.28 -39.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088751641.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.112 kcal (2) G-P(sol) polarization free energy of solvation -32.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds