Wall clock time and date at job start Tue Mar 31 2020 05:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 110.00210 * 2 1 4 4 C 1.54332 * 109.88120 * 238.90563 * 2 1 3 5 5 H 1.09001 * 110.71523 * 336.92979 * 4 2 1 6 6 N 1.46497 * 110.71836 * 100.02737 * 4 2 1 7 7 C 1.34777 * 119.99978 * 205.00044 * 6 4 2 8 8 O 1.21574 * 119.99773 * 0.02562 * 7 6 4 9 9 C 1.47713 * 120.00496 * 179.97438 * 7 6 4 10 10 C 1.40123 * 120.34835 * 0.02562 * 9 7 6 11 11 N 1.31265 * 121.14723 * 180.02562 * 10 9 7 12 12 C 1.32711 * 121.80454 * 0.02562 * 11 10 9 13 13 C 1.40786 * 120.68121 * 359.97438 * 12 11 10 14 14 C 1.39429 * 120.35679 * 180.02562 * 9 7 6 15 15 N 1.35327 * 107.76246 * 180.02562 * 13 12 11 16 16 N 1.28669 * 109.99593 * 359.71281 * 15 13 12 17 17 N 1.37120 * 133.40793 * 179.97438 * 12 11 10 18 18 C 1.46499 * 126.59063 * 359.97438 * 17 12 11 19 19 C 1.55156 * 102.94129 * 218.38999 * 4 2 1 20 20 C 1.54907 * 101.58398 * 35.50061 * 19 4 2 21 21 N 1.47020 * 109.88447 * 121.09920 * 2 1 3 22 22 C 1.36940 * 125.64873 * 298.32227 * 21 2 1 23 23 H 1.07996 * 119.99756 * 359.97438 * 22 21 2 24 24 C 1.38808 * 120.00217 * 180.02562 * 22 21 2 25 25 N 1.31624 * 119.99980 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00401 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47065 * 59.99261 * 26 24 22 28 28 H 1.48495 * 109.47587 * 179.97438 * 26 24 22 29 29 H 1.48508 * 109.46982 * 299.99939 * 26 24 22 30 30 H 1.09006 * 109.47383 * 181.09529 * 1 2 3 31 31 H 1.09006 * 109.46873 * 301.09338 * 1 2 3 32 32 H 1.09000 * 109.47368 * 61.09375 * 1 2 3 33 33 H 0.96994 * 120.00480 * 25.00249 * 6 4 2 34 34 H 1.07992 * 119.42313 * 0.04517 * 10 9 7 35 35 H 1.07999 * 120.95274 * 0.02562 * 14 9 7 36 36 H 1.09002 * 109.47391 * 89.99676 * 18 17 12 37 37 H 1.09001 * 109.46813 * 329.99732 * 18 17 12 38 38 H 1.09004 * 109.47041 * 209.99859 * 18 17 12 39 39 H 1.08999 * 111.00339 * 153.57837 * 19 4 2 40 40 H 1.09004 * 111.00419 * 277.42678 * 19 4 2 41 41 H 1.08997 * 110.37092 * 204.15091 * 20 19 4 42 42 H 1.09004 * 110.36478 * 81.82655 * 20 19 4 43 43 H 0.96996 * 120.00304 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7495 -1.2428 5 1 1.3038 -1.4437 -1.6201 6 7 2.4554 0.1961 -2.2875 7 6 2.4581 -0.1883 -3.5793 8 8 2.1276 -1.3195 -3.8776 9 6 2.8615 0.7653 -4.6329 10 6 3.2432 2.0711 -4.2974 11 7 3.6040 2.9314 -5.2209 12 6 3.6241 2.6086 -6.5080 13 6 3.2552 1.3173 -6.9306 14 6 2.8664 0.3757 -5.9716 15 7 3.3706 1.2753 -8.2783 16 7 3.7681 2.4159 -8.7216 17 7 3.9508 3.2980 -7.6474 18 6 4.3989 4.6905 -7.7273 19 6 3.2875 -1.5143 -0.6925 20 6 2.8145 -1.8795 0.7367 21 7 2.0300 -0.7141 1.1838 22 6 1.8050 -0.3557 2.4862 23 1 1.2149 0.5204 2.7109 24 6 2.3362 -1.1180 3.5175 25 7 3.0558 -2.1855 3.2437 26 14 2.0299 -0.6288 5.2941 27 1 0.5694 -0.6294 5.5629 28 1 2.6994 -1.5989 6.1972 29 1 2.5768 0.7309 5.5344 30 1 -0.3634 -1.0275 0.0196 31 1 -0.3633 0.5308 0.8801 32 1 -0.3634 0.4967 -0.8996 33 1 2.7188 1.0988 -2.0496 34 1 3.2408 2.3749 -3.2611 35 1 2.5768 -0.6239 -6.2603 36 1 5.4858 4.7272 -7.6541 37 1 3.9601 5.2609 -6.9086 38 1 4.0841 5.1194 -8.6787 39 1 3.4851 -2.4110 -1.2798 40 1 4.1654 -0.8689 -0.6605 41 1 3.6716 -2.0339 1.3921 42 1 2.1886 -2.7715 0.7127 43 1 3.4267 -2.7184 3.9643 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088751641.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:59 Heat of formation + Delta-G solvation = 105.537691 kcal Electronic energy + Delta-G solvation = -27414.928147 eV Core-core repulsion = 23497.685241 eV Total energy + Delta-G solvation = -3917.242906 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.52292 -41.29324 -39.72592 -38.86999 -36.00504 -35.66402 -33.95605 -33.30422 -32.10044 -31.84138 -30.31504 -28.71068 -26.97930 -25.89098 -25.67653 -25.02780 -22.61940 -22.38187 -21.75730 -21.43665 -19.70817 -19.08478 -18.64478 -18.06212 -17.61663 -17.40745 -16.99083 -16.50248 -16.02190 -15.68307 -15.51982 -15.13859 -14.91167 -14.62442 -14.38814 -14.29630 -14.11952 -13.98515 -13.92867 -13.66724 -13.63607 -13.17817 -12.88915 -12.79389 -12.68409 -12.55124 -12.21220 -12.11299 -12.04757 -11.99077 -11.51626 -11.41878 -11.34218 -10.71905 -10.66911 -10.47670 -10.20459 -9.93263 -8.84044 -7.69995 -5.14389 -0.97305 -0.56949 0.69149 0.86274 1.51783 1.53998 1.60011 1.63068 1.89535 2.49967 2.54734 2.61817 2.97165 3.06670 3.37126 3.40779 3.53131 3.59482 3.75021 3.90885 4.01173 4.12862 4.28547 4.32122 4.32426 4.57890 4.60881 4.62359 4.67640 4.69827 4.75472 4.88211 4.91456 5.00834 5.11276 5.18558 5.26335 5.40811 5.56150 5.65012 5.67074 5.86850 6.28164 6.36637 6.48848 6.59223 7.13704 7.16546 7.84977 8.47747 9.31470 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.027096 B = 0.002313 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.128682 B =12102.520808 C =12549.402788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.150 3.850 3 H 0.060 0.940 4 C 0.153 3.847 5 H 0.085 0.915 6 N -0.693 5.693 7 C 0.575 3.425 8 O -0.569 6.569 9 C -0.200 4.200 10 C 0.226 3.774 11 N -0.486 5.486 12 C 0.278 3.722 13 C -0.090 4.090 14 C 0.081 3.919 15 N -0.220 5.220 16 N -0.001 5.001 17 N -0.376 5.376 18 C 0.089 3.911 19 C -0.139 4.139 20 C 0.155 3.845 21 N -0.614 5.614 22 C -0.223 4.223 23 H 0.086 0.914 24 C -0.070 4.070 25 N -0.951 5.951 26 Si 0.975 3.025 27 H -0.282 1.282 28 H -0.300 1.300 29 H -0.275 1.275 30 H 0.033 0.967 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.415 0.585 34 H 0.215 0.785 35 H 0.165 0.835 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.118 0.882 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.077 0.923 42 H -0.017 1.017 43 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.133 15.427 -19.960 25.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.043 3.957 3 H 0.078 0.922 4 C 0.047 3.953 5 H 0.103 0.897 6 N -0.345 5.345 7 C 0.362 3.638 8 O -0.449 6.449 9 C -0.209 4.209 10 C 0.052 3.948 11 N -0.200 5.200 12 C 0.034 3.966 13 C -0.216 4.216 14 C 0.050 3.950 15 N -0.100 5.100 16 N 0.017 4.983 17 N -0.173 5.173 18 C -0.050 4.050 19 C -0.179 4.179 20 C 0.030 3.970 21 N -0.339 5.339 22 C -0.352 4.352 23 H 0.104 0.896 24 C -0.262 4.262 25 N -0.601 5.601 26 Si 0.804 3.196 27 H -0.208 1.208 28 H -0.227 1.227 29 H -0.201 1.201 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.254 0.746 34 H 0.231 0.769 35 H 0.182 0.818 36 H 0.119 0.881 37 H 0.129 0.871 38 H 0.137 0.863 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.001 0.999 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 2.342 15.419 -21.395 26.476 hybrid contribution -0.290 -0.615 1.941 2.056 sum 2.052 14.804 -19.454 24.532 Atomic orbital electron populations 1.22149 0.96692 1.00666 1.01283 1.21234 0.93405 0.95410 0.85633 0.92216 1.21783 0.96419 0.90757 0.86298 0.89654 1.45660 1.67404 1.16582 1.04815 1.17864 0.77045 0.86438 0.82429 1.90812 1.49704 1.21649 1.82700 1.20552 1.10102 0.96906 0.93375 1.23611 0.85504 0.86151 0.99560 1.66789 1.19522 1.36572 0.97083 1.19782 0.97171 0.90170 0.89480 1.20530 1.12895 0.96389 0.91822 1.21133 0.85844 0.98785 0.89192 1.74854 1.11929 1.14228 1.08960 1.81696 1.14064 0.93705 1.08796 1.50380 1.51033 1.14057 1.01808 1.22550 1.02573 0.72709 1.07172 1.23214 0.97775 1.00154 0.96714 1.21684 0.95705 0.87799 0.91842 1.44713 1.59726 1.28598 1.00845 1.19346 1.26135 1.07938 0.81788 0.89594 1.25572 1.01035 0.97828 1.01747 1.70033 1.40470 1.18967 1.30654 0.85194 0.77401 0.77101 0.79877 1.20789 1.22660 1.20059 0.94773 0.93487 0.90851 0.74568 0.76876 0.81790 0.88069 0.87052 0.86340 0.91492 0.90618 0.90546 0.99870 0.94574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.87 9.13 71.98 0.66 -4.21 16 2 C 0.15 5.25 3.48 45.34 0.16 5.40 16 3 H 0.06 1.86 7.72 -2.39 -0.02 1.84 16 4 C 0.15 4.79 2.85 46.18 0.13 4.92 16 5 H 0.09 2.97 7.25 -2.39 -0.02 2.95 16 6 N -0.69 -15.39 5.13 -439.89 -2.26 -17.65 16 7 C 0.58 13.84 7.77 86.75 0.67 14.51 16 8 O -0.57 -18.48 16.04 -3.95 -0.06 -18.54 16 9 C -0.20 -3.76 5.88 -20.03 -0.12 -3.88 16 10 C 0.23 3.19 10.69 85.24 0.91 4.10 16 11 N -0.49 -8.25 10.37 -191.98 -1.99 -10.24 16 12 C 0.28 5.49 8.05 134.01 1.08 6.57 16 13 C -0.09 -2.01 7.27 39.63 0.29 -1.72 16 14 C 0.08 1.69 9.75 22.96 0.22 1.91 16 15 N -0.22 -5.35 12.40 -52.14 -0.65 -6.00 16 16 N 0.00 -0.03 13.71 37.02 0.51 0.48 16 17 N -0.38 -6.41 4.10 -366.45 -1.50 -7.91 16 18 C 0.09 0.60 11.54 127.77 1.47 2.07 16 19 C -0.14 -5.01 6.77 31.98 0.22 -4.79 16 20 C 0.16 7.39 5.89 86.85 0.51 7.90 16 21 N -0.61 -28.87 3.13 -668.27 -2.09 -30.96 16 22 C -0.22 -11.60 9.89 84.03 0.83 -10.77 16 23 H 0.09 4.21 7.83 -2.91 -0.02 4.19 16 24 C -0.07 -3.79 5.49 84.86 0.47 -3.32 16 25 N -0.95 -55.27 10.09 21.65 0.22 -55.05 16 26 Si 0.98 44.12 29.55 68.60 2.03 46.14 16 27 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 28 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 29 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 30 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.05 1.60 8.05 -2.38 -0.02 1.58 16 32 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.42 6.20 6.40 -92.71 -0.59 5.60 16 34 H 0.21 1.36 6.39 -2.91 -0.02 1.35 16 35 H 0.16 3.38 7.71 -2.91 -0.02 3.36 16 36 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.12 0.34 8.14 -2.38 -0.02 0.32 16 39 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 41 H 0.08 4.17 5.87 -2.39 -0.01 4.15 16 42 H -0.02 -0.88 8.14 -2.38 -0.02 -0.90 16 43 H 0.24 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -72.73 360.96 2.18 -70.55 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: 0.47 Total: 10.47 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: 7.50 Total: 18.70 kcal Atomic # 7 Polarization: -119.57 SS G_CDS: -7.76 Total: -127.32 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.06 Total: -18.54 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -72.73 2.18 -70.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088751641.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.086 kcal (2) G-P(sol) polarization free energy of solvation -72.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds