Wall clock time and date at job start Tue Mar 31 2020 05:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32460 * 125.18198 * 2 1 4 4 C 1.32875 * 109.80858 * 180.11516 * 3 2 1 5 5 N 1.33735 * 132.44345 * 179.24684 * 4 3 2 6 6 C 1.31204 * 121.19558 * 180.02562 * 5 4 3 7 7 C 1.40096 * 120.45421 * 359.97438 * 6 5 4 8 8 C 1.36999 * 119.05381 * 0.02562 * 7 6 5 9 9 C 1.47719 * 120.63329 * 180.02562 * 8 7 6 10 10 O 1.21555 * 120.00086 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99861 * 180.02562 * 9 8 7 12 12 C 1.46497 * 120.00425 * 179.97438 * 11 9 8 13 13 H 1.09006 * 110.63654 * 323.31490 * 12 11 9 14 14 C 1.55156 * 110.71740 * 86.44973 * 12 11 9 15 15 C 1.54906 * 101.61451 * 153.84824 * 14 12 11 16 16 N 1.47471 * 104.81210 * 323.04512 * 15 14 12 17 17 C 1.36940 * 125.62597 * 204.13711 * 16 15 14 18 18 H 1.07998 * 119.99430 * 179.97438 * 17 16 15 19 19 C 1.38807 * 120.00061 * 359.91787 * 17 16 15 20 20 N 1.31613 * 120.00692 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99746 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47120 * 60.00222 * 21 19 17 23 23 H 1.48499 * 109.47304 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47328 * 300.00238 * 21 19 17 25 25 C 1.47017 * 108.71970 * 24.07007 * 16 15 14 26 26 H 1.08998 * 109.88206 * 239.55467 * 25 16 15 27 27 C 1.53001 * 110.01051 * 118.46572 * 25 16 15 28 28 N 1.36686 * 107.17934 * 359.49695 * 4 3 2 29 29 N 1.31357 * 125.18942 * 179.35050 * 2 1 3 30 30 H 1.09000 * 109.47385 * 270.64553 * 1 2 3 31 31 H 1.08996 * 109.47603 * 30.64862 * 1 2 3 32 32 H 1.08997 * 109.46920 * 150.65217 * 1 2 3 33 33 H 1.08003 * 119.77033 * 180.02562 * 6 5 4 34 34 H 1.08011 * 120.47630 * 179.97438 * 7 6 5 35 35 H 0.97005 * 119.99670 * 359.97438 * 11 9 8 36 36 H 1.09002 * 111.00677 * 271.94408 * 14 12 11 37 37 H 1.09002 * 111.00564 * 35.75667 * 14 12 11 38 38 H 1.09008 * 110.36753 * 81.85112 * 15 14 12 39 39 H 1.09001 * 110.37094 * 204.16995 * 15 14 12 40 40 H 0.96996 * 120.00904 * 179.97438 * 20 19 17 41 41 H 1.09000 * 109.47479 * 302.11188 * 27 25 16 42 42 H 1.09003 * 109.47170 * 62.11068 * 27 25 16 43 43 H 1.09002 * 109.47458 * 182.10904 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2702 1.0826 0.0000 4 6 3.5514 0.7304 -0.0025 5 7 4.6832 1.4426 -0.0165 6 6 5.8562 0.8547 -0.0163 7 6 5.9499 -0.5430 -0.0007 8 6 4.7995 -1.2868 0.0138 9 6 4.8576 -2.7628 0.0310 10 8 5.9334 -3.3287 0.0321 11 7 3.7178 -3.4819 0.0446 12 6 3.7754 -4.9457 0.0612 13 1 4.6050 -5.3045 -0.5481 14 6 3.8935 -5.4740 1.5153 15 6 3.2684 -6.8854 1.3860 16 7 2.1612 -6.7209 0.4259 17 6 1.0563 -7.5251 0.3371 18 1 0.2974 -7.3199 -0.4033 19 6 0.9125 -8.6045 1.1979 20 7 1.8377 -8.8549 2.0999 21 14 -0.5950 -9.7009 1.0772 22 1 -0.6569 -10.3103 -0.2757 23 1 -0.5101 -10.7738 2.1004 24 1 -1.8169 -8.8901 1.3111 25 6 2.4391 -5.5501 -0.4187 26 1 1.6402 -4.8167 -0.3101 27 6 2.5573 -5.9773 -1.8831 28 7 3.5945 -0.6358 0.0073 29 7 2.2640 -1.0734 0.0122 30 1 -0.3634 0.0116 1.0276 31 1 -0.3634 0.8840 -0.5238 32 1 -0.3633 -0.8958 -0.5037 33 1 6.7556 1.4525 -0.0273 34 1 6.9153 -1.0274 -0.0009 35 1 2.8594 -3.0303 0.0435 36 1 4.9367 -5.5355 1.8251 37 1 3.3195 -4.8540 2.2040 38 1 4.0033 -7.5919 0.9998 39 1 2.8882 -7.2218 2.3506 40 1 1.7370 -9.6089 2.7017 41 1 3.3455 -6.7237 -1.9815 42 1 1.6103 -6.4030 -2.2150 43 1 2.8002 -5.1094 -2.4963 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088977336.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:14 Heat of formation + Delta-G solvation = 138.980745 kcal Electronic energy + Delta-G solvation = -28376.145958 eV Core-core repulsion = 24460.353252 eV Total energy + Delta-G solvation = -3915.792706 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -43.32782 -40.19819 -39.05790 -37.67542 -35.12051 -34.14717 -32.62308 -32.06328 -31.14058 -30.46025 -29.23219 -28.75348 -26.21578 -24.81596 -24.09567 -23.92466 -21.88862 -21.02925 -20.30886 -19.77007 -18.93037 -18.53450 -17.27946 -17.13835 -16.84545 -16.09426 -15.74053 -15.03000 -14.86472 -14.40969 -14.13841 -13.99333 -13.95660 -13.87496 -13.51013 -13.12792 -12.88458 -12.80124 -12.68526 -12.20424 -12.20081 -11.92561 -11.65012 -11.21526 -11.02159 -10.89450 -10.81381 -10.67156 -10.54825 -10.45485 -10.16949 -10.09792 -9.96776 -9.83396 -9.62795 -9.26938 -8.85973 -8.69106 -6.93057 -5.69753 -3.12857 -0.39662 0.26673 1.34430 1.94159 2.61592 2.65119 2.86497 3.07726 3.37609 3.41926 3.43256 3.47388 4.02891 4.16213 4.31178 4.44665 4.67000 4.82016 5.12953 5.18941 5.25115 5.31271 5.35330 5.43376 5.46589 5.53888 5.62957 5.69746 5.82708 5.95737 6.04421 6.11113 6.20352 6.24520 6.41045 6.49348 6.60511 6.76395 6.90556 6.98936 7.38300 7.46381 7.53155 7.57344 7.79343 7.95197 8.29530 9.15831 9.76558 10.39891 11.33795 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.016743 B = 0.003279 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.953542 B = 8538.214349 C = 9638.789951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.284 3.716 3 N -0.517 5.517 4 C 0.443 3.557 5 N -0.443 5.443 6 C 0.208 3.792 7 C -0.158 4.158 8 C 0.159 3.841 9 C 0.552 3.448 10 O -0.514 6.514 11 N -0.688 5.688 12 C 0.131 3.869 13 H 0.096 0.904 14 C -0.153 4.153 15 C 0.154 3.846 16 N -0.594 5.594 17 C -0.222 4.222 18 H 0.078 0.922 19 C -0.009 4.009 20 N -0.921 5.921 21 Si 0.915 3.085 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.157 3.843 26 H 0.038 0.962 27 C -0.155 4.155 28 N -0.316 5.316 29 N -0.337 5.337 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.201 0.799 34 H 0.189 0.811 35 H 0.415 0.585 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.017 0.983 39 H 0.111 0.889 40 H 0.253 0.747 41 H 0.053 0.947 42 H 0.056 0.944 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.188 19.116 -4.300 20.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.004 3.996 3 N -0.250 5.250 4 C 0.083 3.917 5 N -0.157 5.157 6 C 0.021 3.979 7 C -0.184 4.184 8 C 0.037 3.963 9 C 0.334 3.666 10 O -0.390 6.390 11 N -0.342 5.342 12 C 0.027 3.973 13 H 0.114 0.886 14 C -0.193 4.193 15 C 0.029 3.971 16 N -0.319 5.319 17 C -0.350 4.350 18 H 0.096 0.904 19 C -0.204 4.204 20 N -0.569 5.569 21 Si 0.746 3.254 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.049 3.951 26 H 0.055 0.945 27 C -0.215 4.215 28 N -0.097 5.097 29 N -0.171 5.171 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.218 0.782 34 H 0.206 0.794 35 H 0.256 0.744 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.035 0.965 39 H 0.128 0.872 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 5.936 18.990 -4.179 20.330 hybrid contribution -0.687 -1.131 -0.108 1.328 sum 5.249 17.859 -4.287 19.102 Atomic orbital electron populations 1.20336 0.82179 1.05112 1.04893 1.24615 0.98716 0.84381 0.91865 1.70735 0.96465 1.28438 1.29362 1.22773 0.93775 0.78188 0.97004 1.67816 0.95701 1.36358 1.15831 1.23700 0.95239 0.91941 0.86992 1.22335 0.98939 0.94800 1.02314 1.21164 0.82451 0.94850 0.97815 1.17516 0.85732 0.84109 0.79279 1.90860 1.28240 1.69827 1.50084 1.46443 1.08983 1.08422 1.70336 1.22353 0.99709 0.76317 0.98959 0.88555 1.23431 1.00697 1.00764 0.94362 1.21969 0.88271 0.89169 0.97688 1.44472 1.21770 1.29335 1.36343 1.18978 0.96337 1.05192 1.14520 0.90449 1.24782 0.98539 0.98704 0.98420 1.69765 1.33849 1.30681 1.22649 0.86148 0.82072 0.80047 0.77177 1.21188 1.21565 1.21140 1.20951 0.92339 0.90896 0.90950 0.94473 1.22246 1.02158 0.99886 0.97214 1.48962 1.06123 1.09250 1.45397 1.78151 0.83140 1.21278 1.34555 0.88629 0.88691 0.88770 0.78244 0.79410 0.74390 0.91683 0.91964 0.96541 0.87163 0.93586 0.92768 0.92468 0.94440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 10.51 36.00 0.38 -0.17 16 2 C 0.28 3.62 8.09 -157.00 -1.27 2.35 16 3 N -0.52 -7.32 11.24 -11.80 -0.13 -7.46 16 4 C 0.44 6.02 9.00 -323.15 -2.91 3.12 16 5 N -0.44 -4.88 10.45 -13.84 -0.14 -5.02 16 6 C 0.21 1.38 11.26 -17.12 -0.19 1.19 16 7 C -0.16 -1.28 9.63 -39.33 -0.38 -1.65 16 8 C 0.16 1.95 6.81 -82.15 -0.56 1.39 16 9 C 0.55 8.27 7.80 -12.39 -0.10 8.18 16 10 O -0.51 -8.52 16.09 5.32 0.09 -8.44 16 11 N -0.69 -11.12 5.20 -53.02 -0.28 -11.40 16 12 C 0.13 2.40 2.76 -66.10 -0.18 2.22 16 13 H 0.10 1.81 7.41 -51.93 -0.38 1.43 16 14 C -0.15 -3.03 6.76 -24.58 -0.17 -3.19 16 15 C 0.15 3.70 5.89 -2.50 -0.01 3.69 16 16 N -0.59 -14.70 3.13 -162.54 -0.51 -15.21 16 17 C -0.22 -5.98 9.90 -15.06 -0.15 -6.13 16 18 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 19 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 20 N -0.92 -26.31 10.09 55.49 0.56 -25.75 16 21 Si 0.92 21.66 29.55 -169.99 -5.02 16.64 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 C 0.16 3.19 3.47 -66.96 -0.23 2.95 16 26 H 0.04 0.77 7.69 -51.93 -0.40 0.37 16 27 C -0.16 -2.89 9.15 37.16 0.34 -2.55 16 28 N -0.32 -4.30 3.93 -10.51 -0.04 -4.34 16 29 N -0.34 -4.77 10.11 32.39 0.33 -4.45 16 30 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.20 0.27 8.06 -52.48 -0.42 -0.15 16 34 H 0.19 1.07 7.66 -52.48 -0.40 0.66 16 35 H 0.41 6.63 5.40 -40.82 -0.22 6.41 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 39 H 0.11 2.97 5.88 -51.93 -0.31 2.67 16 40 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.06 1.09 8.05 -51.93 -0.42 0.67 16 43 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 359.03 15.07 5.41 5.41 Total: -1.00 -33.74 359.03 -10.75 -44.49 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -5.48 Total: 4.47 kcal Atomic # 6 Polarization: 16.58 SS G_CDS: -5.53 Total: 11.05 kcal Atomic # 7 Polarization: -73.40 SS G_CDS: -0.22 Total: -73.62 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.09 Total: -8.44 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.74 -10.75 -44.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088977336.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.468 kcal (2) G-P(sol) polarization free energy of solvation -33.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds