Wall clock time and date at job start Tue Mar 31 2020 05:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32460 * 125.18198 * 2 1 4 4 C 1.32875 * 109.80858 * 180.11516 * 3 2 1 5 5 N 1.33735 * 132.44345 * 179.24684 * 4 3 2 6 6 C 1.31204 * 121.19558 * 180.02562 * 5 4 3 7 7 C 1.40096 * 120.45421 * 359.97438 * 6 5 4 8 8 C 1.36999 * 119.05381 * 0.02562 * 7 6 5 9 9 C 1.47719 * 120.63329 * 180.02562 * 8 7 6 10 10 O 1.21555 * 120.00086 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99861 * 180.02562 * 9 8 7 12 12 C 1.46497 * 120.00425 * 179.97438 * 11 9 8 13 13 H 1.09006 * 110.63654 * 323.31490 * 12 11 9 14 14 C 1.55156 * 110.71740 * 86.44973 * 12 11 9 15 15 C 1.54906 * 101.61451 * 153.84824 * 14 12 11 16 16 N 1.47471 * 104.81210 * 323.04512 * 15 14 12 17 17 C 1.36940 * 125.62597 * 204.13711 * 16 15 14 18 18 H 1.07998 * 119.99430 * 179.97438 * 17 16 15 19 19 C 1.38807 * 120.00061 * 359.91787 * 17 16 15 20 20 N 1.31613 * 120.00692 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99746 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47120 * 60.00222 * 21 19 17 23 23 H 1.48499 * 109.47304 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47328 * 300.00238 * 21 19 17 25 25 C 1.47017 * 108.71970 * 24.07007 * 16 15 14 26 26 H 1.08998 * 109.88206 * 239.55467 * 25 16 15 27 27 C 1.53001 * 110.01051 * 118.46572 * 25 16 15 28 28 N 1.36686 * 107.17934 * 359.49695 * 4 3 2 29 29 N 1.31357 * 125.18942 * 179.35050 * 2 1 3 30 30 H 1.09000 * 109.47385 * 270.64553 * 1 2 3 31 31 H 1.08996 * 109.47603 * 30.64862 * 1 2 3 32 32 H 1.08997 * 109.46920 * 150.65217 * 1 2 3 33 33 H 1.08003 * 119.77033 * 180.02562 * 6 5 4 34 34 H 1.08011 * 120.47630 * 179.97438 * 7 6 5 35 35 H 0.97005 * 119.99670 * 359.97438 * 11 9 8 36 36 H 1.09002 * 111.00677 * 271.94408 * 14 12 11 37 37 H 1.09002 * 111.00564 * 35.75667 * 14 12 11 38 38 H 1.09008 * 110.36753 * 81.85112 * 15 14 12 39 39 H 1.09001 * 110.37094 * 204.16995 * 15 14 12 40 40 H 0.96996 * 120.00904 * 179.97438 * 20 19 17 41 41 H 1.09000 * 109.47479 * 302.11188 * 27 25 16 42 42 H 1.09003 * 109.47170 * 62.11068 * 27 25 16 43 43 H 1.09002 * 109.47458 * 182.10904 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2702 1.0826 0.0000 4 6 3.5514 0.7304 -0.0025 5 7 4.6832 1.4426 -0.0165 6 6 5.8562 0.8547 -0.0163 7 6 5.9499 -0.5430 -0.0007 8 6 4.7995 -1.2868 0.0138 9 6 4.8576 -2.7628 0.0310 10 8 5.9334 -3.3287 0.0321 11 7 3.7178 -3.4819 0.0446 12 6 3.7754 -4.9457 0.0612 13 1 4.6050 -5.3045 -0.5481 14 6 3.8935 -5.4740 1.5153 15 6 3.2684 -6.8854 1.3860 16 7 2.1612 -6.7209 0.4259 17 6 1.0563 -7.5251 0.3371 18 1 0.2974 -7.3199 -0.4033 19 6 0.9125 -8.6045 1.1979 20 7 1.8377 -8.8549 2.0999 21 14 -0.5950 -9.7009 1.0772 22 1 -0.6569 -10.3103 -0.2757 23 1 -0.5101 -10.7738 2.1004 24 1 -1.8169 -8.8901 1.3111 25 6 2.4391 -5.5501 -0.4187 26 1 1.6402 -4.8167 -0.3101 27 6 2.5573 -5.9773 -1.8831 28 7 3.5945 -0.6358 0.0073 29 7 2.2640 -1.0734 0.0122 30 1 -0.3634 0.0116 1.0276 31 1 -0.3634 0.8840 -0.5238 32 1 -0.3633 -0.8958 -0.5037 33 1 6.7556 1.4525 -0.0273 34 1 6.9153 -1.0274 -0.0009 35 1 2.8594 -3.0303 0.0435 36 1 4.9367 -5.5355 1.8251 37 1 3.3195 -4.8540 2.2040 38 1 4.0033 -7.5919 0.9998 39 1 2.8882 -7.2218 2.3506 40 1 1.7370 -9.6089 2.7017 41 1 3.3455 -6.7237 -1.9815 42 1 1.6103 -6.4030 -2.2150 43 1 2.8002 -5.1094 -2.4963 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088977336.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:13 Heat of formation + Delta-G solvation = 118.365343 kcal Electronic energy + Delta-G solvation = -28377.039909 eV Core-core repulsion = 24460.353252 eV Total energy + Delta-G solvation = -3916.686657 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.19318 -41.38604 -40.03358 -39.18694 -36.12006 -35.59641 -33.85892 -33.39825 -32.14799 -32.03315 -30.62147 -29.88645 -27.46309 -26.07922 -25.80004 -25.01023 -22.91653 -22.25989 -21.88489 -21.33059 -19.88453 -19.43728 -18.73391 -18.23032 -18.03661 -17.57467 -16.70780 -16.52088 -16.22788 -15.82021 -15.68703 -15.20439 -14.76865 -14.73295 -14.63333 -14.48463 -14.08656 -13.95640 -13.84101 -13.56168 -13.34053 -13.29716 -12.99613 -12.83666 -12.74141 -12.65928 -12.36204 -12.23737 -12.05524 -11.83635 -11.63135 -11.54137 -11.43121 -11.14979 -10.79382 -10.74725 -10.33502 -10.10328 -8.93970 -7.77066 -5.22432 -1.20618 -0.50309 0.50467 1.03823 1.47294 1.50262 1.54835 1.57388 1.58750 2.10194 2.23547 2.48423 2.58072 3.09419 3.33457 3.42311 3.52282 3.66508 3.73433 3.84486 3.84931 4.08021 4.17971 4.41365 4.51484 4.54217 4.60500 4.65355 4.66445 4.70976 4.72666 4.80327 4.83231 4.94593 5.00153 5.10933 5.22780 5.24780 5.43396 5.46907 5.55628 5.75984 6.07667 6.22699 6.27201 6.63929 6.74063 7.08637 7.75276 8.38619 9.24807 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.016743 B = 0.003279 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.953542 B = 8538.214349 C = 9638.789951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.277 3.723 3 N -0.545 5.545 4 C 0.428 3.572 5 N -0.461 5.461 6 C 0.233 3.767 7 C -0.119 4.119 8 C 0.119 3.881 9 C 0.557 3.443 10 O -0.533 6.533 11 N -0.693 5.693 12 C 0.148 3.852 13 H 0.095 0.905 14 C -0.138 4.138 15 C 0.159 3.841 16 N -0.612 5.612 17 C -0.232 4.232 18 H 0.083 0.917 19 C -0.065 4.065 20 N -0.949 5.949 21 Si 0.979 3.021 22 H -0.279 1.279 23 H -0.296 1.296 24 H -0.277 1.277 25 C 0.152 3.848 26 H 0.039 0.961 27 C -0.146 4.146 28 N -0.323 5.323 29 N -0.368 5.368 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.100 0.900 33 H 0.263 0.737 34 H 0.219 0.781 35 H 0.416 0.584 36 H 0.077 0.923 37 H 0.060 0.940 38 H -0.006 1.006 39 H 0.079 0.921 40 H 0.247 0.753 41 H 0.044 0.956 42 H 0.049 0.951 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.375 21.313 -5.240 23.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.003 4.003 3 N -0.279 5.279 4 C 0.068 3.932 5 N -0.176 5.176 6 C 0.048 3.952 7 C -0.144 4.144 8 C -0.001 4.001 9 C 0.341 3.659 10 O -0.410 6.410 11 N -0.347 5.347 12 C 0.043 3.957 13 H 0.113 0.887 14 C -0.178 4.178 15 C 0.034 3.966 16 N -0.338 5.338 17 C -0.360 4.360 18 H 0.101 0.899 19 C -0.257 4.257 20 N -0.599 5.599 21 Si 0.807 3.193 22 H -0.205 1.205 23 H -0.222 1.222 24 H -0.203 1.203 25 C 0.045 3.955 26 H 0.056 0.944 27 C -0.205 4.205 28 N -0.105 5.105 29 N -0.202 5.202 30 H 0.125 0.875 31 H 0.128 0.872 32 H 0.118 0.882 33 H 0.278 0.722 34 H 0.236 0.764 35 H 0.258 0.742 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.012 0.988 39 H 0.097 0.903 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.133 21.220 -5.147 22.971 hybrid contribution -0.888 -1.688 0.169 1.915 sum 6.245 19.532 -4.978 21.102 Atomic orbital electron populations 1.20518 0.79851 1.06090 1.05887 1.25278 1.00052 0.83812 0.91116 1.70702 0.97250 1.29280 1.30625 1.23112 0.94457 0.78391 0.97209 1.67975 0.96136 1.36578 1.16938 1.24782 0.95623 0.91673 0.83162 1.22945 0.98604 0.95392 0.97509 1.21090 0.83434 0.93459 1.02074 1.17797 0.84852 0.85336 0.77950 1.90843 1.28569 1.70745 1.50816 1.46333 1.09795 1.07245 1.71308 1.21959 0.98402 0.77946 0.97404 0.88657 1.23220 1.00849 0.98047 0.95653 1.21689 0.87832 0.91169 0.95931 1.44696 1.21422 1.30208 1.37442 1.19341 0.97075 1.05390 1.14227 0.89872 1.25594 1.01324 1.00324 0.98499 1.70011 1.35519 1.30932 1.23420 0.85143 0.79059 0.78067 0.76995 1.20478 1.22181 1.20256 1.21107 0.93395 0.89521 0.91438 0.94368 1.22111 1.01478 1.00703 0.96186 1.48900 1.06096 1.09347 1.46140 1.78026 0.83872 1.22399 1.35933 0.87505 0.87219 0.88180 0.72166 0.76391 0.74187 0.90448 0.92153 0.98789 0.90344 0.94322 0.93655 0.93175 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.04 10.51 71.23 0.75 -0.29 16 2 C 0.28 7.05 8.09 138.68 1.12 8.17 16 3 N -0.54 -15.26 11.24 -191.24 -2.15 -17.41 16 4 C 0.43 11.15 9.00 261.61 2.35 13.51 16 5 N -0.46 -8.86 10.45 -197.69 -2.07 -10.93 16 6 C 0.23 1.99 11.26 85.24 0.96 2.94 16 7 C -0.12 -1.44 9.63 22.43 0.22 -1.23 16 8 C 0.12 2.70 6.81 40.56 0.28 2.97 16 9 C 0.56 15.95 7.80 86.75 0.68 16.62 16 10 O -0.53 -16.71 16.09 -3.89 -0.06 -16.77 16 11 N -0.69 -21.98 5.20 -439.93 -2.29 -24.27 16 12 C 0.15 5.40 2.76 46.18 0.13 5.53 16 13 H 0.10 3.53 7.41 -2.38 -0.02 3.51 16 14 C -0.14 -5.53 6.76 31.98 0.22 -5.31 16 15 C 0.16 7.94 5.89 86.85 0.51 8.45 16 16 N -0.61 -30.94 3.13 -668.17 -2.09 -33.03 16 17 C -0.23 -12.67 9.90 84.03 0.83 -11.83 16 18 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 19 C -0.06 -3.63 5.49 84.86 0.47 -3.16 16 20 N -0.95 -56.04 10.09 21.65 0.22 -55.82 16 21 Si 0.98 45.13 29.55 68.60 2.03 47.15 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 23 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 24 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 25 C 0.15 6.20 3.47 45.34 0.16 6.36 16 26 H 0.04 1.57 7.69 -2.39 -0.02 1.55 16 27 C -0.15 -5.31 9.15 71.98 0.66 -4.65 16 28 N -0.32 -8.50 3.93 -187.16 -0.74 -9.24 16 29 N -0.37 -10.41 10.11 -51.44 -0.52 -10.93 16 30 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.26 -1.15 8.06 -2.91 -0.02 -1.17 16 34 H 0.22 1.32 7.66 -2.91 -0.02 1.30 16 35 H 0.42 13.23 5.40 -92.70 -0.50 12.73 16 36 H 0.08 2.88 8.14 -2.39 -0.02 2.87 16 37 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 38 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 39 H 0.08 4.44 5.88 -2.39 -0.01 4.42 16 40 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 41 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.05 1.88 8.05 -2.39 -0.02 1.86 16 43 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -76.88 359.03 2.21 -74.67 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.56 Total: 18.50 kcal Atomic # 6 Polarization: 28.75 SS G_CDS: 9.32 Total: 38.07 kcal Atomic # 7 Polarization: -151.99 SS G_CDS: -9.63 Total: -161.62 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.06 Total: -16.77 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -76.88 2.21 -74.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088977336.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.033 kcal (2) G-P(sol) polarization free energy of solvation -76.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds