Wall clock time and date at job start Tue Mar 31 2020 05:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 120.00247 * 2 1 4 4 H 1.48505 * 109.46700 * 269.99729 * 3 2 1 5 5 H 1.48495 * 109.47373 * 29.99418 * 3 2 1 6 6 H 1.48502 * 109.47173 * 149.99702 * 3 2 1 7 7 C 1.38819 * 119.99767 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00046 * 191.43096 * 7 2 1 9 9 N 1.36936 * 119.99837 * 11.42840 * 7 2 1 10 10 C 1.46999 * 120.61770 * 30.86687 * 9 7 2 11 11 C 1.53191 * 108.73741 * 126.38650 * 10 9 7 12 12 C 1.53032 * 109.33862 * 54.62170 * 11 10 9 13 13 H 1.09006 * 109.46209 * 58.64467 * 12 11 10 14 14 N 1.46503 * 109.45835 * 178.59426 * 12 11 10 15 15 C 1.34774 * 120.00510 * 275.00371 * 14 12 11 16 16 O 1.21283 * 119.99605 * 4.65804 * 15 14 12 17 17 C 1.50696 * 120.00377 * 184.65536 * 15 14 12 18 18 C 1.50699 * 115.55258 * 293.95497 * 17 15 14 19 19 C 1.38235 * 120.00283 * 149.04801 * 18 17 15 20 20 C 1.38239 * 119.99953 * 179.76931 * 19 18 17 21 21 C 1.38235 * 120.00080 * 0.48620 * 20 19 18 22 22 C 1.38233 * 119.99764 * 359.79365 * 21 20 19 23 23 C 1.38236 * 120.00323 * 359.94836 * 22 21 20 24 24 C 1.52999 * 117.50131 * 148.28621 * 17 15 14 25 25 C 1.52998 * 117.49848 * 79.62303 * 17 15 14 26 26 C 1.53036 * 109.54067 * 298.61751 * 12 11 10 27 27 H 1.08993 * 109.49957 * 301.38035 * 26 12 11 28 28 O 1.42905 * 109.49492 * 181.31831 * 26 12 11 29 29 C 1.46924 * 120.62909 * 210.84332 * 9 7 2 30 30 H 0.97004 * 119.99955 * 0.02562 * 1 2 3 31 31 H 1.09006 * 109.62570 * 6.59493 * 10 9 7 32 32 H 1.08993 * 109.57857 * 246.14948 * 10 9 7 33 33 H 1.09003 * 109.49496 * 294.65746 * 11 10 9 34 34 H 1.08994 * 109.49513 * 174.59631 * 11 10 9 35 35 H 0.97002 * 119.99735 * 95.00484 * 14 12 11 36 36 H 1.08002 * 120.00051 * 359.97438 * 19 18 17 37 37 H 1.08003 * 119.99716 * 180.25083 * 20 19 18 38 38 H 1.07992 * 120.00202 * 179.76625 * 21 20 19 39 39 H 1.08001 * 119.99845 * 179.97438 * 22 21 20 40 40 H 1.07996 * 120.00013 * 180.02562 * 23 22 21 41 41 H 1.09001 * 117.49848 * 359.97438 * 24 17 15 42 42 H 1.08994 * 117.50330 * 145.02165 * 24 17 15 43 43 H 1.09003 * 117.50206 * 214.98028 * 25 17 15 44 44 H 1.09001 * 117.49996 * 359.97438 * 25 17 15 45 45 H 0.96705 * 113.99497 * 180.02562 * 28 26 12 46 46 H 1.09006 * 109.58703 * 113.84337 * 29 9 7 47 47 H 1.09004 * 109.70843 * 353.49030 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0462 -1.4002 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0741 -1.2115 0.1859 9 7 1.3458 -2.3764 -0.2339 10 6 0.1629 -2.4061 -1.1061 11 6 0.3773 -3.4669 -2.1903 12 6 0.7052 -4.8077 -1.5295 13 1 -0.1109 -5.0951 -0.8665 14 7 0.8778 -5.8318 -2.5628 15 6 -0.1959 -6.4826 -3.0527 16 8 -1.3116 -6.1626 -2.7006 17 6 -0.0104 -7.6076 -4.0380 18 6 0.5532 -7.2116 -5.3783 19 6 1.3387 -8.1006 -6.0879 20 6 1.8517 -7.7390 -7.3196 21 6 1.5875 -6.4847 -7.8371 22 6 0.8068 -5.5936 -7.1249 23 6 0.2894 -5.9571 -5.8957 24 6 -1.0311 -8.7471 -4.0097 25 6 0.3871 -8.9760 -3.4810 26 6 1.9976 -4.6771 -0.7203 27 1 2.8090 -4.3663 -1.3783 28 8 2.3193 -5.9375 -0.1287 29 6 1.8021 -3.6304 0.3810 30 1 -0.4850 0.8401 -0.0004 31 1 0.0268 -1.4299 -1.5718 32 1 -0.7189 -2.6584 -0.5172 33 1 1.2039 -3.1669 -2.8343 34 1 -0.5301 -3.5670 -2.7858 35 1 1.7649 -6.0415 -2.8944 36 1 1.5488 -9.0789 -5.6816 37 1 2.4620 -8.4351 -7.8758 38 1 1.9914 -6.2008 -8.7976 39 1 0.6007 -4.6134 -7.5290 40 1 -0.3209 -5.2610 -5.3395 41 1 -1.8366 -8.6831 -3.2781 42 1 -1.2946 -9.2104 -4.9603 43 1 1.0560 -9.5900 -4.0842 44 1 0.5149 -9.0625 -2.4019 45 1 3.1287 -5.9284 0.4005 46 1 1.0538 -3.9825 1.0912 47 1 2.7468 -3.4635 0.8985 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090779293.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:30 Heat of formation + Delta-G solvation = -11.268395 kcal Electronic energy + Delta-G solvation = -28829.459014 eV Core-core repulsion = 24978.398608 eV Total energy + Delta-G solvation = -3851.060406 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.59945 -39.10009 -38.01221 -36.36580 -35.39181 -34.26135 -31.93284 -31.14290 -30.70273 -29.97604 -28.55993 -25.71896 -24.40069 -23.03017 -22.67236 -22.25728 -21.96697 -21.25457 -19.83322 -19.14652 -17.78713 -17.11983 -16.66607 -16.45467 -15.88631 -15.34990 -15.08849 -14.86834 -14.77710 -14.27133 -14.04337 -13.90318 -13.64783 -13.45529 -13.18524 -13.04492 -12.86839 -12.65908 -12.25672 -12.04002 -11.87163 -11.54199 -11.48433 -11.28619 -11.10532 -10.91531 -10.88675 -10.71191 -10.62598 -10.33562 -10.23387 -9.98270 -9.78570 -9.69230 -9.38728 -9.08696 -8.79021 -8.69380 -8.46052 -6.73126 -5.84739 -3.34207 1.12711 1.23842 2.73422 3.24286 3.33872 3.40067 3.41656 3.44504 3.86495 4.30934 4.35930 4.50181 4.62400 4.67442 4.77953 4.83626 4.90617 5.03905 5.23918 5.29795 5.34722 5.39924 5.47401 5.47918 5.55567 5.55962 5.70713 5.77850 5.83750 5.86833 5.94806 5.97728 6.12406 6.29679 6.34014 6.36926 6.42669 6.48510 6.53930 6.68062 6.77666 6.81304 6.89275 7.30969 7.63409 7.72084 7.77698 7.91283 8.39551 8.45938 9.13637 9.74203 10.31514 11.23347 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.014868 B = 0.003252 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.801337 B = 8608.239008 C = 9451.925305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.007 3.993 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.260 4.260 8 H 0.066 0.934 9 N -0.588 5.588 10 C 0.172 3.828 11 C -0.147 4.147 12 C 0.164 3.836 13 H 0.086 0.914 14 N -0.707 5.707 15 C 0.552 3.448 16 O -0.536 6.536 17 C -0.122 4.122 18 C -0.040 4.040 19 C -0.118 4.118 20 C -0.119 4.119 21 C -0.123 4.123 22 C -0.113 4.113 23 C -0.105 4.105 24 C -0.135 4.135 25 C -0.156 4.156 26 C 0.080 3.920 27 H 0.055 0.945 28 O -0.571 6.571 29 C 0.121 3.879 30 H 0.256 0.744 31 H 0.094 0.906 32 H 0.023 0.977 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.397 0.603 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.108 0.892 42 H 0.103 0.897 43 H 0.106 0.894 44 H 0.104 0.896 45 H 0.373 0.627 46 H 0.029 0.971 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.438 -17.564 -12.389 21.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.192 4.192 3 Si 0.736 3.264 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.390 4.390 8 H 0.083 0.917 9 N -0.312 5.312 10 C 0.046 3.954 11 C -0.187 4.187 12 C 0.060 3.940 13 H 0.104 0.896 14 N -0.355 5.355 15 C 0.337 3.663 16 O -0.413 6.413 17 C -0.125 4.125 18 C -0.041 4.041 19 C -0.136 4.136 20 C -0.137 4.137 21 C -0.141 4.141 22 C -0.131 4.131 23 C -0.123 4.123 24 C -0.172 4.172 25 C -0.193 4.193 26 C 0.019 3.981 27 H 0.073 0.927 28 O -0.375 6.375 29 C -0.006 4.006 30 H 0.066 0.934 31 H 0.112 0.888 32 H 0.042 0.958 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.231 0.769 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.126 0.874 42 H 0.121 0.879 43 H 0.124 0.876 44 H 0.123 0.877 45 H 0.220 0.780 46 H 0.046 0.954 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.969 -17.348 -12.385 21.521 hybrid contribution 1.405 1.062 0.098 1.764 sum 4.374 -16.286 -12.287 20.864 Atomic orbital electron populations 1.69981 1.05287 1.25717 1.53453 1.25177 0.95411 0.98505 1.00123 0.86234 0.79007 0.83403 0.77735 1.21318 1.21597 1.20382 1.19164 0.90998 0.83833 1.44969 0.91663 1.44017 1.32299 1.02861 1.52041 1.20855 0.88200 0.97205 0.89101 1.22610 1.00895 0.94763 1.00439 1.21016 0.97257 0.87734 0.87975 0.89622 1.46014 1.09273 1.39394 1.40843 1.19196 0.84758 0.81727 0.80658 1.90716 1.24292 1.66288 1.60021 1.20182 1.07651 0.90489 0.94217 1.18790 0.97603 0.94519 0.93166 1.21006 0.97911 0.99610 0.95066 1.21090 1.00136 0.96685 0.95758 1.21171 0.98886 0.94082 1.00000 1.21169 0.97488 0.99718 0.94730 1.21078 0.99431 0.95867 0.95972 1.23064 0.93018 0.97541 1.03559 1.23192 0.98735 0.95359 1.01992 1.22778 0.95746 0.83997 0.95548 0.92660 1.86477 1.47814 1.32952 1.70303 1.21526 0.98811 0.87418 0.92875 0.93395 0.88766 0.95847 0.92418 0.91947 0.76948 0.85782 0.86024 0.86101 0.85800 0.85932 0.87382 0.87888 0.87601 0.87725 0.78029 0.95358 0.92192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.87 11.06 55.49 0.61 -25.25 16 2 C 0.01 0.20 5.03 -17.43 -0.09 0.11 16 3 Si 0.91 21.28 29.57 -169.99 -5.03 16.26 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 7 C -0.26 -6.96 9.59 -15.06 -0.14 -7.10 16 8 H 0.07 1.70 7.85 -52.49 -0.41 1.28 16 9 N -0.59 -14.44 2.99 -172.26 -0.51 -14.96 16 10 C 0.17 4.16 5.26 -3.67 -0.02 4.14 16 11 C -0.15 -2.93 5.65 -26.62 -0.15 -3.08 16 12 C 0.16 3.00 2.08 -67.89 -0.14 2.85 16 13 H 0.09 1.80 7.65 -51.93 -0.40 1.40 16 14 N -0.71 -10.96 4.91 -53.77 -0.26 -11.23 16 15 C 0.55 8.85 5.89 -10.99 -0.06 8.78 16 16 O -0.54 -10.69 16.39 5.55 0.09 -10.60 16 17 C -0.12 -1.50 2.36 -156.82 -0.37 -1.87 16 18 C -0.04 -0.47 5.47 -104.62 -0.57 -1.04 16 19 C -0.12 -1.13 9.37 -39.58 -0.37 -1.50 16 20 C -0.12 -1.05 10.05 -39.58 -0.40 -1.44 16 21 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 22 C -0.11 -1.21 10.05 -39.58 -0.40 -1.61 16 23 C -0.11 -1.32 9.32 -39.58 -0.37 -1.68 16 24 C -0.13 -1.44 9.74 -26.69 -0.26 -1.70 16 25 C -0.16 -1.51 9.58 -26.69 -0.26 -1.76 16 26 C 0.08 1.38 3.14 -26.62 -0.08 1.29 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 28 O -0.57 -8.52 13.16 -35.23 -0.46 -8.98 16 29 C 0.12 2.48 6.14 -3.71 -0.02 2.45 16 30 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.09 2.52 6.09 -51.93 -0.32 2.20 16 32 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.06 1.25 8.11 -51.93 -0.42 0.83 16 35 H 0.40 5.45 8.61 -40.82 -0.35 5.10 16 36 H 0.12 0.93 5.94 -52.49 -0.31 0.62 16 37 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 38 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 39 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 40 H 0.12 1.72 7.36 -52.49 -0.39 1.34 16 41 H 0.11 1.28 8.01 -51.93 -0.42 0.86 16 42 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.11 0.78 6.09 -51.93 -0.32 0.46 16 44 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 45 H 0.37 4.00 9.08 45.56 0.41 4.41 16 46 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.06 1.15 7.94 -51.93 -0.41 0.74 16 LS Contribution 382.23 15.07 5.76 5.76 Total: -1.00 -32.02 382.23 -10.18 -42.19 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -6.27 Total: 11.53 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -4.11 Total: -4.72 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: -0.17 Total: -51.44 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.37 Total: -19.58 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.02 -10.18 -42.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090779293.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.924 kcal (2) G-P(sol) polarization free energy of solvation -32.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds