Wall clock time and date at job start Tue Mar 31 2020 05:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00171 * 2 1 4 4 H 1.48498 * 109.46887 * 269.99980 * 3 2 1 5 5 H 1.48493 * 109.46945 * 29.99886 * 3 2 1 6 6 H 1.48500 * 109.46901 * 150.00110 * 3 2 1 7 7 C 1.38814 * 119.99817 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99871 * 197.36388 * 7 2 1 9 9 N 1.36938 * 120.00174 * 17.36294 * 7 2 1 10 10 C 1.46923 * 120.63355 * 207.66633 * 9 7 2 11 11 C 1.53191 * 108.77598 * 233.63107 * 10 9 7 12 12 C 1.53039 * 109.30936 * 305.35795 * 11 10 9 13 13 H 1.08996 * 109.45272 * 301.35432 * 12 11 10 14 14 N 1.46505 * 109.45754 * 181.38529 * 12 11 10 15 15 C 1.34772 * 119.99602 * 84.93361 * 14 12 11 16 16 O 1.21551 * 120.00528 * 0.02562 * 15 14 12 17 17 C 1.47851 * 119.99858 * 179.97438 * 15 14 12 18 18 C 1.39597 * 120.18320 * 0.02562 * 17 15 14 19 19 C 1.37805 * 119.78398 * 180.02562 * 18 17 15 20 20 C 1.38666 * 120.41111 * 0.02562 * 19 18 17 21 21 C 1.38380 * 120.08040 * 359.97100 * 20 19 18 22 22 C 1.38237 * 119.99269 * 0.02562 * 21 20 19 23 23 C 1.51399 * 109.74209 * 179.97438 * 21 20 19 24 24 C 1.54329 * 105.17547 * 17.21077 * 23 21 20 25 25 C 1.51427 * 130.21419 * 179.97438 * 20 19 18 26 26 C 1.53041 * 109.53566 * 61.36883 * 12 11 10 27 27 H 1.09001 * 109.50047 * 58.61473 * 26 12 11 28 28 O 1.42898 * 109.49789 * 178.67754 * 26 12 11 29 29 C 1.46921 * 120.62951 * 27.68465 * 9 7 2 30 30 H 0.96996 * 119.99644 * 359.97438 * 1 2 3 31 31 H 1.09009 * 109.58528 * 353.41648 * 10 9 7 32 32 H 1.08998 * 109.59244 * 113.83653 * 10 9 7 33 33 H 1.09001 * 109.49218 * 185.41202 * 11 10 9 34 34 H 1.08993 * 109.49923 * 65.31354 * 11 10 9 35 35 H 0.96996 * 119.99668 * 264.93732 * 14 12 11 36 36 H 1.08001 * 120.11032 * 0.04009 * 18 17 15 37 37 H 1.07995 * 119.79610 * 180.02562 * 19 18 17 38 38 H 1.07993 * 119.94591 * 180.02562 * 22 21 20 39 39 H 1.08997 * 110.30052 * 136.13921 * 23 21 20 40 40 H 1.08998 * 110.29747 * 258.18729 * 23 21 20 41 41 H 1.08995 * 110.82055 * 215.36385 * 24 23 21 42 42 H 1.08997 * 110.81833 * 91.81994 * 24 23 21 43 43 H 1.08999 * 110.29947 * 281.71409 * 25 20 19 44 44 H 1.08991 * 110.29849 * 43.86689 * 25 20 19 45 45 H 0.96705 * 114.00480 * 179.97438 * 28 26 12 46 46 H 1.09003 * 109.58822 * 6.58642 * 29 9 7 47 47 H 1.09008 * 109.70587 * 246.23117 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0533 -1.2234 0.2797 9 7 1.3723 -2.3612 -0.3528 10 6 1.8194 -3.6547 0.1816 11 6 2.0751 -4.6099 -0.9885 12 6 0.8196 -4.6901 -1.8599 13 1 -0.0194 -5.0367 -1.2567 14 7 1.0493 -5.6282 -2.9616 15 6 0.8493 -6.9479 -2.7755 16 8 0.4780 -7.3599 -1.6939 17 6 1.0806 -7.8946 -3.8874 18 6 1.5065 -7.4257 -5.1313 19 6 1.7190 -8.3153 -6.1621 20 6 1.5118 -9.6731 -5.9714 21 6 1.0897 -10.1441 -4.7406 22 6 0.8735 -9.2606 -3.6997 23 6 0.9388 -11.6496 -4.7936 24 6 1.7285 -12.0910 -6.0439 25 6 1.6734 -10.8313 -6.9334 26 6 0.5014 -3.3050 -2.4277 27 1 1.3499 -2.9471 -3.0111 28 8 -0.6530 -3.3868 -3.2659 29 6 0.2280 -2.3350 -1.2740 30 1 -0.4849 0.8400 0.0004 31 1 2.7401 -3.5172 0.7489 32 1 1.0471 -4.0691 0.8295 33 1 2.3145 -5.6010 -0.6033 34 1 2.9089 -4.2396 -1.5849 35 1 1.3453 -5.2993 -3.8248 36 1 1.6692 -6.3692 -5.2854 37 1 2.0489 -7.9528 -7.1244 38 1 0.5444 -9.6291 -2.7394 39 1 1.3631 -12.1040 -3.8983 40 1 -0.1122 -11.9211 -4.8929 41 1 1.2396 -12.9331 -6.5336 42 1 2.7583 -12.3367 -5.7849 43 1 0.8198 -10.8834 -7.6092 44 1 2.5990 -10.7266 -7.4992 45 1 -0.9132 -2.5431 -3.6606 46 1 0.0985 -1.3267 -1.6672 47 1 -0.6757 -2.6403 -0.7463 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090798949.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:27 Heat of formation + Delta-G solvation = -45.555823 kcal Electronic energy + Delta-G solvation = -28018.299502 eV Core-core repulsion = 24165.752282 eV Total energy + Delta-G solvation = -3852.547220 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.60170 -39.43079 -37.85278 -35.70029 -35.27023 -34.36793 -32.20289 -31.67675 -30.06871 -29.04719 -28.64886 -27.67048 -25.27710 -23.45788 -22.46408 -22.12031 -21.57429 -21.12233 -19.91951 -19.37493 -17.66629 -16.83770 -16.62278 -16.26709 -15.94167 -15.59821 -15.13236 -14.94569 -14.68114 -14.48062 -13.87576 -13.75145 -13.65912 -13.35220 -13.23524 -13.20177 -12.81785 -12.66544 -12.21020 -12.10992 -11.96718 -11.86215 -11.65702 -11.53940 -11.22828 -11.19345 -11.02500 -10.84892 -10.78249 -10.41247 -10.19987 -10.02822 -9.89490 -9.54248 -9.35432 -9.04910 -8.85381 -8.66417 -8.52289 -6.79380 -5.87755 -3.31254 0.72962 1.16783 2.89029 3.30739 3.34441 3.39918 3.41326 3.77609 4.07420 4.21507 4.40377 4.56901 4.63652 4.69487 4.74657 4.89672 4.95728 5.11645 5.28214 5.30675 5.34618 5.38542 5.43312 5.45599 5.47579 5.56964 5.60260 5.73907 5.79027 5.88379 5.91163 6.00695 6.08726 6.11006 6.19386 6.23373 6.34705 6.44882 6.48373 6.67776 6.70734 6.85320 6.91153 7.11344 7.45129 7.70952 7.75008 8.09286 8.35160 8.42331 9.10523 9.73315 10.29585 11.20704 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.030340 B = 0.002321 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.645962 B =12063.250963 C =12290.176683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.255 4.255 8 H 0.069 0.931 9 N -0.589 5.589 10 C 0.145 3.855 11 C -0.139 4.139 12 C 0.162 3.838 13 H 0.089 0.911 14 N -0.709 5.709 15 C 0.556 3.444 16 O -0.541 6.541 17 C -0.126 4.126 18 C -0.085 4.085 19 C -0.115 4.115 20 C -0.079 4.079 21 C -0.108 4.108 22 C -0.049 4.049 23 C -0.082 4.082 24 C -0.121 4.121 25 C -0.085 4.085 26 C 0.072 3.928 27 H 0.051 0.949 28 O -0.573 6.573 29 C 0.148 3.852 30 H 0.255 0.745 31 H 0.061 0.939 32 H 0.024 0.976 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.396 0.604 36 H 0.129 0.871 37 H 0.125 0.875 38 H 0.134 0.866 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.376 0.624 46 H 0.094 0.906 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.235 -19.523 -15.434 25.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.384 4.384 8 H 0.087 0.913 9 N -0.313 5.313 10 C 0.018 3.982 11 C -0.180 4.180 12 C 0.058 3.942 13 H 0.107 0.893 14 N -0.358 5.358 15 C 0.343 3.657 16 O -0.420 6.420 17 C -0.129 4.129 18 C -0.104 4.104 19 C -0.133 4.133 20 C -0.079 4.079 21 C -0.108 4.108 22 C -0.068 4.068 23 C -0.119 4.119 24 C -0.158 4.158 25 C -0.121 4.121 26 C 0.011 3.989 27 H 0.069 0.931 28 O -0.377 6.377 29 C 0.021 3.979 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.042 0.958 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.231 0.769 36 H 0.147 0.853 37 H 0.143 0.857 38 H 0.152 0.848 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.092 0.908 43 H 0.100 0.900 44 H 0.095 0.905 45 H 0.223 0.777 46 H 0.112 0.888 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 2.887 -20.271 -14.443 25.057 hybrid contribution 0.494 1.831 -0.598 1.989 sum 3.381 -18.439 -15.042 24.035 Atomic orbital electron populations 1.70031 1.05259 1.25697 1.53617 1.25085 0.95331 0.98566 1.00709 0.86254 0.79166 0.83460 0.77694 1.21421 1.21699 1.20336 1.19221 0.92869 0.84617 1.41737 0.91312 1.44014 1.35628 1.01815 1.49856 1.20945 0.98265 0.86281 0.92702 1.22421 0.96620 1.00295 0.98635 1.21021 0.98741 0.86998 0.87397 0.89305 1.46020 1.68093 1.06118 1.15612 1.18196 0.77570 0.82443 0.87524 1.90760 1.46769 1.78061 1.26365 1.19915 1.04583 0.94074 0.94373 1.21222 0.97347 0.99727 0.92065 1.20535 1.01781 0.91771 0.99242 1.20819 0.97532 0.94101 0.95477 1.20538 1.00535 0.95960 0.93800 1.20705 0.96102 0.91133 0.98854 1.21054 1.01142 0.90666 0.99031 1.22293 1.00876 0.97193 0.95443 1.21103 1.02573 0.91577 0.96893 1.22983 0.87062 0.95424 0.93430 0.93055 1.86422 1.48329 1.36591 1.66387 1.21414 0.89838 0.98234 0.88405 0.93473 0.92063 0.95774 0.91750 0.91997 0.76949 0.85343 0.85671 0.84843 0.90478 0.90054 0.90424 0.90841 0.89958 0.90494 0.77746 0.88785 0.95197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.50 11.19 55.49 0.62 -24.88 16 2 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 3 Si 0.90 21.10 29.59 -169.99 -5.03 16.07 16 4 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 7 C -0.26 -6.80 9.59 -15.06 -0.14 -6.94 16 8 H 0.07 1.80 7.89 -52.49 -0.41 1.39 16 9 N -0.59 -14.44 2.99 -172.32 -0.52 -14.96 16 10 C 0.14 3.08 6.52 -3.71 -0.02 3.05 16 11 C -0.14 -2.56 5.65 -26.61 -0.15 -2.71 16 12 C 0.16 2.99 2.12 -67.89 -0.14 2.85 16 13 H 0.09 1.89 7.58 -51.93 -0.39 1.50 16 14 N -0.71 -11.14 4.87 -54.71 -0.27 -11.41 16 15 C 0.56 9.23 7.74 -12.33 -0.10 9.13 16 16 O -0.54 -10.84 16.01 5.32 0.09 -10.76 16 17 C -0.13 -1.72 5.87 -105.01 -0.62 -2.33 16 18 C -0.08 -0.93 9.54 -39.23 -0.37 -1.31 16 19 C -0.12 -1.10 10.02 -39.58 -0.40 -1.50 16 20 C -0.08 -0.75 6.14 -104.05 -0.64 -1.39 16 21 C -0.11 -1.13 6.13 -104.23 -0.64 -1.77 16 22 C -0.05 -0.62 9.59 -39.14 -0.38 -1.00 16 23 C -0.08 -0.62 6.77 -26.84 -0.18 -0.80 16 24 C -0.12 -0.71 7.08 -25.35 -0.18 -0.89 16 25 C -0.08 -0.56 6.77 -26.84 -0.18 -0.74 16 26 C 0.07 1.35 3.14 -26.61 -0.08 1.26 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 O -0.57 -9.84 13.16 -35.23 -0.46 -10.30 16 29 C 0.15 3.43 4.94 -3.71 -0.02 3.41 16 30 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.06 1.25 7.93 -51.92 -0.41 0.84 16 32 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.40 5.22 6.64 -40.82 -0.27 4.95 16 36 H 0.13 1.18 6.41 -52.49 -0.34 0.85 16 37 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.13 1.74 7.64 -52.49 -0.40 1.34 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.38 5.15 9.08 45.56 0.41 5.56 16 46 H 0.09 2.37 6.03 -51.93 -0.31 2.05 16 47 H 0.03 0.76 8.14 -51.92 -0.42 0.34 16 LS Contribution 376.77 15.07 5.68 5.68 Total: -1.00 -32.25 376.77 -10.56 -42.80 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -6.34 Total: 9.46 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -4.33 Total: -1.71 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: -0.16 Total: -51.24 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -0.38 Total: -21.06 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.25 -10.56 -42.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090798949.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.752 kcal (2) G-P(sol) polarization free energy of solvation -32.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds