Wall clock time and date at job start Tue Mar 31 2020 05:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 120.00412 * 2 1 4 4 H 1.48497 * 109.47281 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46823 * 300.00140 * 3 2 1 6 6 H 1.48503 * 109.46796 * 59.99794 * 3 2 1 7 7 C 1.38814 * 119.99570 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99572 * 162.75622 * 7 2 1 9 9 N 1.36939 * 120.00481 * 343.02962 * 7 2 1 10 10 C 1.46927 * 120.63012 * 151.77767 * 9 7 2 11 11 C 1.53618 * 108.54374 * 126.37257 * 10 9 7 12 12 C 1.53043 * 109.24352 * 54.85236 * 11 10 9 13 13 H 1.09001 * 109.45929 * 58.53268 * 12 11 10 14 14 N 1.46498 * 109.45129 * 178.49651 * 12 11 10 15 15 C 1.34774 * 120.00262 * 275.06649 * 14 12 11 16 16 O 1.21557 * 119.99801 * 359.97438 * 15 14 12 17 17 C 1.47850 * 120.00058 * 179.97438 * 15 14 12 18 18 C 1.39586 * 120.18505 * 359.97438 * 17 15 14 19 19 C 1.37804 * 119.78474 * 179.97438 * 18 17 15 20 20 C 1.38663 * 120.41306 * 359.97438 * 19 18 17 21 21 C 1.38379 * 120.07876 * 0.02741 * 20 19 18 22 22 C 1.38238 * 119.98913 * 359.74008 * 21 20 19 23 23 C 1.51394 * 109.74725 * 180.02562 * 21 20 19 24 24 C 1.54336 * 105.17036 * 342.78179 * 23 21 20 25 25 C 1.51425 * 130.22143 * 180.02562 * 20 19 18 26 26 C 1.53044 * 109.53800 * 298.51375 * 12 11 10 27 27 H 1.09003 * 109.52146 * 301.39613 * 26 12 11 28 28 O 1.42902 * 109.49562 * 181.31628 * 26 12 11 29 29 C 1.46926 * 120.63016 * 332.05819 * 9 7 2 30 30 H 0.96995 * 119.99600 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.58235 * 246.20187 * 10 9 7 32 32 H 1.09001 * 109.58777 * 6.62358 * 10 9 7 33 33 H 1.09001 * 109.63463 * 294.86774 * 11 10 9 34 34 H 1.09001 * 109.46096 * 174.74003 * 11 10 9 35 35 H 0.97001 * 119.99649 * 95.05725 * 14 12 11 36 36 H 1.07998 * 120.11050 * 359.95582 * 18 17 15 37 37 H 1.08002 * 119.79309 * 180.02562 * 19 18 17 38 38 H 1.08011 * 119.94476 * 180.25998 * 22 21 20 39 39 H 1.09000 * 110.30159 * 223.85532 * 23 21 20 40 40 H 1.08999 * 110.38601 * 101.74351 * 23 21 20 41 41 H 1.09003 * 110.81522 * 268.17871 * 24 23 21 42 42 H 1.08992 * 110.82224 * 144.64183 * 24 23 21 43 43 H 1.08997 * 110.30079 * 316.12118 * 25 20 19 44 44 H 1.08998 * 110.29851 * 78.26445 * 25 20 19 45 45 H 0.96704 * 113.99682 * 180.16119 * 28 26 12 46 46 H 1.09004 * 109.58335 * 353.37286 * 29 9 7 47 47 H 1.08996 * 109.58482 * 113.79346 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0538 -1.2234 -0.2767 9 7 1.3702 -2.3622 0.3472 10 6 1.8130 -3.6530 -0.1975 11 6 2.0680 -4.6152 0.9725 12 6 0.8105 -4.6979 1.8409 13 1 -0.0279 -5.0402 1.2342 14 7 1.0365 -5.6421 2.9380 15 6 0.8349 -6.9606 2.7448 16 8 0.4651 -7.3663 1.6602 17 6 1.0635 -7.9135 3.8519 18 6 1.4887 -7.4518 5.0987 19 6 1.6988 -8.3472 6.1249 20 6 1.4899 -9.7036 5.9268 21 6 1.0684 -10.1675 4.6931 22 6 0.8500 -9.2776 3.6581 23 6 0.9153 -11.6730 4.7378 24 6 1.7032 -12.1222 5.9866 25 6 1.6487 -10.8672 6.8827 26 6 0.4934 -3.3152 2.4153 27 1 1.3410 -2.9614 3.0021 28 8 -0.6631 -3.3996 3.2505 29 6 0.2240 -2.3389 1.2660 30 1 -0.4849 0.8400 -0.0004 31 1 1.0383 -4.0604 -0.8471 32 1 2.7330 -3.5138 -0.7652 33 1 2.9011 -4.2494 1.5727 34 1 2.3070 -5.6049 0.5832 35 1 1.3314 -5.3182 3.8035 36 1 1.6528 -6.3964 5.2585 37 1 2.0274 -7.9901 7.0898 38 1 0.5170 -9.6400 2.6967 39 1 1.3399 -12.1231 3.8405 40 1 -0.1357 -11.9451 4.8357 41 1 2.7330 -12.3680 5.7271 42 1 1.2127 -12.9663 6.4713 43 1 2.5739 -10.7671 7.4500 44 1 0.7944 -10.9215 7.5575 45 1 -0.9239 -2.5572 3.6473 46 1 0.0952 -1.3324 1.6642 47 1 -0.6775 -2.6414 0.7332 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090798950.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:30 Heat of formation + Delta-G solvation = -45.592730 kcal Electronic energy + Delta-G solvation = -28016.597694 eV Core-core repulsion = 24164.048873 eV Total energy + Delta-G solvation = -3852.548821 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.60102 -39.42677 -37.84568 -35.70042 -35.26287 -34.36667 -32.19237 -31.67570 -30.06845 -29.02932 -28.64779 -27.66996 -25.27586 -23.45747 -22.46388 -22.12174 -21.56870 -21.12151 -19.91949 -19.37959 -17.66533 -16.83472 -16.62235 -16.26599 -15.94104 -15.59855 -15.13273 -14.94363 -14.67951 -14.47659 -13.86655 -13.75165 -13.65942 -13.34979 -13.23564 -13.20070 -12.81801 -12.66350 -12.20537 -12.10901 -11.96334 -11.86168 -11.65064 -11.53833 -11.23274 -11.19406 -11.02467 -10.85939 -10.76743 -10.41300 -10.19752 -10.03241 -9.89353 -9.53899 -9.35254 -9.04855 -8.85357 -8.66559 -8.52576 -6.78753 -5.87910 -3.31670 0.73014 1.16805 2.89073 3.30199 3.34090 3.40043 3.42221 3.77647 4.07439 4.21578 4.40327 4.57017 4.63647 4.69551 4.74685 4.89709 4.95748 5.11697 5.28533 5.30770 5.34600 5.38493 5.43420 5.45649 5.47883 5.56968 5.60488 5.73937 5.79039 5.88380 5.91611 6.00078 6.08852 6.11036 6.19403 6.23091 6.34732 6.44846 6.48674 6.67825 6.70827 6.85406 6.91272 7.11541 7.45015 7.71128 7.75089 8.09340 8.35195 8.42421 9.10489 9.73179 10.29622 11.20464 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.030383 B = 0.002319 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.350010 B =12069.500908 C =12295.249919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.001 3.999 3 Si 0.904 3.096 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.254 4.254 8 H 0.069 0.931 9 N -0.589 5.589 10 C 0.145 3.855 11 C -0.139 4.139 12 C 0.162 3.838 13 H 0.089 0.911 14 N -0.709 5.709 15 C 0.556 3.444 16 O -0.541 6.541 17 C -0.126 4.126 18 C -0.085 4.085 19 C -0.115 4.115 20 C -0.079 4.079 21 C -0.108 4.108 22 C -0.049 4.049 23 C -0.082 4.082 24 C -0.121 4.121 25 C -0.085 4.085 26 C 0.072 3.928 27 H 0.052 0.948 28 O -0.573 6.573 29 C 0.148 3.852 30 H 0.255 0.745 31 H 0.025 0.975 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.396 0.604 36 H 0.129 0.871 37 H 0.125 0.875 38 H 0.134 0.866 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.376 0.624 46 H 0.094 0.906 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.189 -19.598 15.357 25.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.384 4.384 8 H 0.087 0.913 9 N -0.313 5.313 10 C 0.018 3.982 11 C -0.180 4.180 12 C 0.058 3.942 13 H 0.107 0.893 14 N -0.358 5.358 15 C 0.343 3.657 16 O -0.420 6.420 17 C -0.129 4.129 18 C -0.104 4.104 19 C -0.133 4.133 20 C -0.079 4.079 21 C -0.108 4.108 22 C -0.068 4.068 23 C -0.119 4.119 24 C -0.158 4.158 25 C -0.121 4.121 26 C 0.011 3.989 27 H 0.070 0.930 28 O -0.377 6.377 29 C 0.021 3.979 30 H 0.065 0.935 31 H 0.043 0.957 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.230 0.770 36 H 0.147 0.853 37 H 0.143 0.857 38 H 0.152 0.848 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.100 0.900 45 H 0.223 0.777 46 H 0.112 0.888 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 2.849 -20.343 14.374 25.071 hybrid contribution 0.472 1.832 0.582 1.980 sum 3.321 -18.511 14.956 24.029 Atomic orbital electron populations 1.70039 1.05267 1.25585 1.53728 1.25100 0.95335 0.98588 1.00706 0.86201 0.79387 0.83734 0.77334 1.20179 1.21630 1.21530 1.19255 0.92782 0.84557 1.41784 0.91292 1.44042 1.35547 1.01977 1.49775 1.21035 0.98271 0.86291 0.92616 1.22493 0.96578 1.00269 0.98626 1.21022 0.98758 0.86876 0.87498 0.89313 1.46023 1.68134 1.06116 1.15573 1.18199 0.77558 0.82453 0.87529 1.90761 1.46804 1.78331 1.26064 1.19912 1.04576 0.94077 0.94375 1.21219 0.97365 0.99715 0.92058 1.20535 1.01782 0.91742 0.99271 1.20819 0.97538 0.94116 0.95454 1.20536 1.00532 0.95933 0.93824 1.20709 0.96092 0.91096 0.98901 1.21054 1.01149 0.90642 0.99051 1.22296 1.00888 0.97207 0.95421 1.21103 1.02576 0.91544 0.96921 1.22982 0.87015 0.95441 0.93454 0.93042 1.86424 1.48160 1.36679 1.66471 1.21416 0.89797 0.98142 0.88513 0.93530 0.95746 0.92054 0.91983 0.91789 0.76951 0.85342 0.85671 0.84841 0.90476 0.90057 0.90842 0.90429 0.90500 0.89956 0.77747 0.88774 0.95208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.50 11.18 55.49 0.62 -24.88 16 2 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 3 Si 0.90 21.08 29.59 -169.99 -5.03 16.05 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.25 -6.78 9.58 -15.06 -0.14 -6.92 16 8 H 0.07 1.81 7.89 -52.48 -0.41 1.39 16 9 N -0.59 -14.44 2.99 -172.06 -0.51 -14.96 16 10 C 0.14 3.07 6.54 -3.49 -0.02 3.05 16 11 C -0.14 -2.56 5.67 -26.39 -0.15 -2.71 16 12 C 0.16 2.99 2.12 -67.89 -0.14 2.85 16 13 H 0.09 1.89 7.58 -51.93 -0.39 1.49 16 14 N -0.71 -11.14 4.87 -54.71 -0.27 -11.41 16 15 C 0.56 9.23 7.74 -12.33 -0.10 9.13 16 16 O -0.54 -10.85 16.01 5.32 0.09 -10.76 16 17 C -0.13 -1.71 5.87 -105.02 -0.62 -2.33 16 18 C -0.08 -0.93 9.54 -39.24 -0.37 -1.31 16 19 C -0.12 -1.10 10.02 -39.58 -0.40 -1.50 16 20 C -0.08 -0.75 6.14 -104.06 -0.64 -1.39 16 21 C -0.11 -1.13 6.13 -104.23 -0.64 -1.77 16 22 C -0.05 -0.63 9.59 -39.14 -0.38 -1.00 16 23 C -0.08 -0.62 6.77 -26.84 -0.18 -0.80 16 24 C -0.12 -0.71 7.08 -25.35 -0.18 -0.89 16 25 C -0.08 -0.56 6.77 -26.84 -0.18 -0.74 16 26 C 0.07 1.35 3.14 -26.61 -0.08 1.26 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 O -0.57 -9.84 13.16 -35.23 -0.46 -10.30 16 29 C 0.15 3.43 4.93 -3.71 -0.02 3.41 16 30 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 1.25 7.93 -51.93 -0.41 0.84 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.40 5.22 6.64 -40.82 -0.27 4.95 16 36 H 0.13 1.18 6.41 -52.49 -0.34 0.85 16 37 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.13 1.74 7.64 -52.48 -0.40 1.34 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.38 5.15 9.08 45.56 0.41 5.56 16 46 H 0.09 2.37 6.04 -51.93 -0.31 2.05 16 47 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 376.81 15.07 5.68 5.68 Total: -1.00 -32.27 376.81 -10.55 -42.82 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -6.34 Total: 9.45 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -4.33 Total: -1.70 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: -0.16 Total: -51.24 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.38 Total: -21.06 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.27 -10.55 -42.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090798950.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.768 kcal (2) G-P(sol) polarization free energy of solvation -32.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds